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Search of human proteins with 239742865
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742865 PREDICTED: hypothetical protein XP_002342666 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754299 PREDICTED: hypothetical protein [Homo sapiens] 286 4e-78
gi|239748838 PREDICTED: hypothetical protein XP_002346834 [Homo ... 286 4e-78
gi|239742865 PREDICTED: hypothetical protein XP_002342666 [Homo ... 286 4e-78
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 37 0.007
gi|5031805 insulin receptor substrate 1 [Homo sapiens] 34 0.034
gi|169164558 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|239748011 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|169163356 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6... 33 0.098
gi|4504619 insulin-like growth factor binding protein 7 [Homo sa... 32 0.13
gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo sa... 32 0.13
gi|239756672 PREDICTED: hypothetical protein LOC146429 [Homo sap... 32 0.22
gi|239745643 PREDICTED: hypothetical protein LOC146429 isoform 1... 32 0.22
gi|30387656 late cornified envelope 1B [Homo sapiens] 32 0.22
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 31 0.28
gi|169213727 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|59709427 XK, Kell blood group complex subunit-related family,... 31 0.37
gi|73747889 a disintegrin and metalloprotease domain 17 prepropr... 30 0.48
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 0.48
gi|4503433 E2F transcription factor 3 [Homo sapiens] 30 0.83
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens] 30 0.83
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 30 0.83
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 30 0.83
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 30 0.83
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 30 0.83
gi|151101311 proteome of centriole 5 isoform 1 [Homo sapiens] 29 1.1
gi|151101301 proteome of centriole 5 isoform 2 [Homo sapiens] 29 1.1
gi|83816964 Holliday junction recognition protein [Homo sapiens] 29 1.1
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 29 1.1
gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens] 29 1.1
>gi|239754299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 286 bits (732), Expect = 4e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD
Sbjct: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
Query: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM
Sbjct: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
Query: 121 RMLPLTVFPGEAVKVFQFG 139
RMLPLTVFPGEAVKVFQFG
Sbjct: 121 RMLPLTVFPGEAVKVFQFG 139
>gi|239748838 PREDICTED: hypothetical protein XP_002346834 [Homo
sapiens]
Length = 139
Score = 286 bits (732), Expect = 4e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD
Sbjct: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
Query: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM
Sbjct: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
Query: 121 RMLPLTVFPGEAVKVFQFG 139
RMLPLTVFPGEAVKVFQFG
Sbjct: 121 RMLPLTVFPGEAVKVFQFG 139
>gi|239742865 PREDICTED: hypothetical protein XP_002342666 [Homo
sapiens]
Length = 139
Score = 286 bits (732), Expect = 4e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD
Sbjct: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
Query: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM
Sbjct: 61 GGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSGDKWARFSGM 120
Query: 121 RMLPLTVFPGEAVKVFQFG 139
RMLPLTVFPGEAVKVFQFG
Sbjct: 121 RMLPLTVFPGEAVKVFQFG 139
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 36.6 bits (83), Expect = 0.007
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 1 MIFQLSLCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSD 60
+ F+ S P P D SSS SS + SS+++S G + D
Sbjct: 2533 LTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGD 2592
Query: 61 GGCGGGG--CASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTS 110
GGCG GG C++ RA S + + + + SS SSSS S +S
Sbjct: 2593 GGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 29 SSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGCGGGGCASFCRRALISRRSRRTRRVR 88
+ G +C A SS AASP + SS + S +S + S S +
Sbjct: 2597 TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2656
Query: 89 APLDRMALTRSSFSSSS---FSCTSGDKWA 115
+ + + SS SS++ SC+S D+ A
Sbjct: 2657 SSSSSSSSSSSSSSSTTDEDSSCSSDDEAA 2686
>gi|5031805 insulin receptor substrate 1 [Homo sapiens]
Length = 1242
Score = 34.3 bits (77), Expect = 0.034
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 27 PSSSGSSCKACSSTAASPWGPAGSSPLDT-VLLSDGGCGGGGCASFCRRALISRRSRRTR 85
P ++ ++ + S+ +ASP GP G++ L L G G GG ++F R L R++ +
Sbjct: 1027 PRATMAAASSSSAASASPTGPQGAAELAAHSSLLGGPQGPGGMSAFTRVNLSPNRNQSAK 1086
Query: 86 RVRAPLDRMALTRSSFSSSSFSCT 109
+RA R SS +FS T
Sbjct: 1087 VIRADPQG---CRRRHSSETFSST 1107
>gi|169164558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.034
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 9 PSLPSNPLP----ACDY--LSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGG 62
PSL PLP AC LS L P SG ++ A+ WG A P + +GG
Sbjct: 73 PSLARKPLPSSASACSASALSKLPPPGSGCGANLRAAAASWCWGDAEKPPGSVAMSVEGG 132
Query: 63 C 63
C
Sbjct: 133 C 133
>gi|239748011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.034
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 9 PSLPSNPLP----ACDY--LSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGG 62
PSL PLP AC LS L P SG ++ A+ WG A P + +GG
Sbjct: 73 PSLARKPLPSSASACSASALSKLPPPGSGCGANLRAAAASWCWGDAEKPPGSVAMSVEGG 132
Query: 63 C 63
C
Sbjct: 133 C 133
>gi|169163356 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.034
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 9 PSLPSNPLP----ACDY--LSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGG 62
PSL PLP AC LS L P SG ++ A+ WG A P + +GG
Sbjct: 73 PSLARKPLPSSASACSASALSKLPPPGSGCGANLRAAAASWCWGDAEKPPGSVAMSVEGG 132
Query: 63 C 63
C
Sbjct: 133 C 133
>gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6
[Homo sapiens]
Length = 560
Score = 32.7 bits (73), Expect = 0.098
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 9 PSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASP-W----GPAGSSPLDTVLLSDG-- 61
P LP L YL+PL+ + SS +CS AA P W G PL+ V G
Sbjct: 85 PCLPLGVLSP-SYLAPLTRAPRPSSWASCSGAAAGPTWNLVCGDGWKVPLEQVSHLLGWL 143
Query: 62 -GCG--GGGCASFCRRAL 76
GC G GC F RRA+
Sbjct: 144 LGCVILGAGCDRFGRRAV 161
>gi|4504619 insulin-like growth factor binding protein 7 [Homo
sapiens]
Length = 282
Score = 32.3 bits (72), Expect = 0.13
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 22 LSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDT-------VLLSDG---GCGGGGCA-S 70
L PLS SSS +C C + P P G +T + + G CGGGG
Sbjct: 20 LLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRG 79
Query: 71 FCRRALISRRSRRTRRVRA 89
+C + +SR+ R+ +A
Sbjct: 80 YCAPGMECVKSRKRRKGKA 98
>gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo
sapiens]
Length = 1054
Score = 32.3 bits (72), Expect = 0.13
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 15 PLPACDYLSPLSPSSSGSSCKACSSTAASPWGPA--GSSPLDTVLLSDGGCGGGGC 68
P P SP SS S + S P GPA GSSPL + +LSD G G C
Sbjct: 468 PGPGLSTKSPQPSPSSRKSPLSLSPAFQVPLGPAEQGSSPLLSPVLSDAGGAGMDC 523
>gi|239756672 PREDICTED: hypothetical protein LOC146429 [Homo
sapiens]
Length = 495
Score = 31.6 bits (70), Expect = 0.22
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 21 YLSPLSPSSSGSSCKACSSTAASP-W----GPAGSSPLDTVLLSDG---GCG--GGGCAS 70
YL+PL+ + SS +CS AA P W G PL+ V G GC G GC
Sbjct: 94 YLAPLTRAPRPSSWASCSGAAAGPTWNLVCGDGWKVPLEQVSHLLGWLLGCVILGAGCDR 153
Query: 71 FCRRAL 76
F RRA+
Sbjct: 154 FGRRAV 159
>gi|239745643 PREDICTED: hypothetical protein LOC146429 isoform 1
[Homo sapiens]
Length = 558
Score = 31.6 bits (70), Expect = 0.22
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 21 YLSPLSPSSSGSSCKACSSTAASP-W----GPAGSSPLDTVLLSDG---GCG--GGGCAS 70
YL+PL+ + SS +CS AA P W G PL+ V G GC G GC
Sbjct: 94 YLAPLTRAPRPSSWASCSGAAAGPTWNLVCGDGWKVPLEQVSHLLGWLLGCVILGAGCDR 153
Query: 71 FCRRAL 76
F RRA+
Sbjct: 154 FGRRAV 159
>gi|30387656 late cornified envelope 1B [Homo sapiens]
Length = 118
Score = 31.6 bits (70), Expect = 0.22
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 7 LCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGC--- 63
L P P P C +S SSG C +S G GS S GGC
Sbjct: 25 LTPRCPPKCPPKCPPVSSCCSVSSGGCC------GSSSGGSCGS--------SSGGCCSS 70
Query: 64 GGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSSSFSCTSG 111
GGGGC +S RR P ++ S SS SG
Sbjct: 71 GGGGCC-------LSHHRRRRSHCHRPQSSGCCSQPSGGSSCCGGGSG 111
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 31.2 bits (69), Expect = 0.28
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 12 PSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPL-DTVLLSDGGCGGGG--- 67
P+ P P S + SS+ + +CS TAA G A + + S GG GG G
Sbjct: 105 PAGPAPVAFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGPGSRSAGGAGGTGTGS 164
Query: 68 ----CASFCRRALISRRSRRTRR 86
C C R RR RR
Sbjct: 165 GASCCPCCCCCGCPDRPGRRGRR 187
>gi|169213727 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 31.2 bits (69), Expect = 0.28
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 28 SSSGSSCKACSS-TAASPWGPAGSSPLDTVLLSDGGCGGG---GCASFCRRALISRRSRR 83
S+ G+SC + S SP G A S+ +D+ S GGC G CASFC RR RR
Sbjct: 150 SAVGASCVSIGSGNGCSPSGVAVSA-VDSA--SRGGCRRGVMMRCASFCTSMATRRRQRR 206
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 30.8 bits (68), Expect = 0.37
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 7 LCPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGCGGG 66
L P LPS + + G C C A G AGS V + G GG
Sbjct: 34 LAPGLPSGSGAEDEEAAGGGCCPDGGGCSRCCCCCAGSGGSAGSGGSGGV--AGPGGGGA 91
Query: 67 GCASFCRRALISRRSRR 83
G A+ C R + R RR
Sbjct: 92 GSAALCLR--LGREQRR 106
>gi|73747889 a disintegrin and metalloprotease domain 17
preproprotein [Homo sapiens]
Length = 824
Score = 30.4 bits (67), Expect = 0.48
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 32 SSCKACSSTA--ASPWGPAGSSPLDTVLLSDGGCGGGGCASFCRR 74
++CK S +S P G++ DTV L G C G C FC R
Sbjct: 540 ATCKGVSYCTGNSSECPPPGNAEDDTVCLDLGKCKDGKCIPFCER 584
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 30.4 bits (67), Expect = 0.48
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 50 SSPLDTVLLSDGGCGGGGCASFC 72
S P+ + L +GGCG GGC C
Sbjct: 933 SVPIQGITLEEGGCGTGGCECEC 955
>gi|4503433 E2F transcription factor 3 [Homo sapiens]
Length = 465
Score = 29.6 bits (65), Expect = 0.83
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 24 PLSPSSSGSSCKACSSTAASPWGPAGSSPL--DTVLLSDGGCGGGG 67
PL PS+ G+ A S +P GP+ + L L GG GGGG
Sbjct: 83 PLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALGRGGSGGGG 128
>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
Length = 977
Score = 29.6 bits (65), Expect = 0.83
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 6 SLCPSLPSNPL--PACDYLSPLSPSSSGSSCKACSSTA-ASPWGPAGSSPLDTVLLSDGG 62
+L PS P+ PL D L+PL S + S + + +GP + LD++ L GG
Sbjct: 219 ALLPSTPTMPLFPHVLDLLAPLDSSRTLPSTDSLDDFSDGDVFGPELDTLLDSLSLVQGG 278
Query: 63 CGGGGCAS 70
G G S
Sbjct: 279 LSGSGVPS 286
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 29.6 bits (65), Expect = 0.83
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 28 SSSGSSCKACSSTAASPWGPAGSSPLDTVL---------LSDGGCGGGGCASFCRRALIS 78
+++ ++ A SS++A P G+ PL+ L L GGCGG G A F A+++
Sbjct: 222 AAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDA-FGAAAMLA 280
Query: 79 RRS 81
+ S
Sbjct: 281 KGS 283
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 29.6 bits (65), Expect = 0.83
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 8 CPSLPSNPLPACDYLSPLSPSSSGSSCKACSST------AASPWGPAGSSPLDTVLLSDG 61
C S P+ C + P+ S SSC +C + S G GS
Sbjct: 31 CGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGSSKGGCGSCGCSQSNCCKP 90
Query: 62 GCGGGGCASFCRRALISR 79
C GC SFC ++ S+
Sbjct: 91 CCSSSGCGSFCCQSSCSK 108
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 29.6 bits (65), Expect = 0.83
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 8 CPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLL--SDGGCGG 65
C S P+ C + P+ S SSC +C + G G S D S GGCG
Sbjct: 24 CGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGR-GSCGGSKGDCGSCGGSKGGCGS 82
Query: 66 GGCA 69
GC+
Sbjct: 83 CGCS 86
Score = 28.5 bits (62), Expect = 1.8
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 17 PACDYLSPLSPSSSGSSC--KACSSTAASPWGPAGSSPLDTVLLSDGGCGGGGCASFCRR 74
P C S P S S C C S+ P S GCG C S C +
Sbjct: 112 PCCSQSSCCKPCSCSSGCGSSCCQSSCCKPC--CSQSSCCKPCCCSSGCGSSCCQSSCCK 169
Query: 75 ALISRRS 81
S+ S
Sbjct: 170 PCCSQSS 176
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 29.6 bits (65), Expect = 0.83
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 8 CPSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLL--SDGGCGG 65
C S P+ C + P+ S SSC +C + +G G S V S GGCG
Sbjct: 45 CGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGG-YGSCGGSKGGCVSCGGSKGGCGS 103
Query: 66 -----GGCAS 70
GGC S
Sbjct: 104 CGGSKGGCGS 113
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 28 SSSGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGCGGGGCASFCRRALISRRS 81
SSSG C S+ P+ S S GCG C S C S+ S
Sbjct: 226 SSSGCGSSCCQSSCCKPY--CCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSS 277
>gi|151101311 proteome of centriole 5 isoform 1 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 7 LCPSLPSNPLPACDYLSPLSPSS-SGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGCGG 65
L PS P PLP L P P++ G+S A S A+ A S+ V +S G G
Sbjct: 401 LDPSAPPMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGS 460
Query: 66 GGCAS----FCRRALISRRSRRTRRVRA 89
A+ + R + S + + R + A
Sbjct: 461 AATAASEEMYVPRVVTSAQQKAGRTITA 488
>gi|151101301 proteome of centriole 5 isoform 2 [Homo sapiens]
Length = 550
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 7 LCPSLPSNPLPACDYLSPLSPSS-SGSSCKACSSTAASPWGPAGSSPLDTVLLSDGGCGG 65
L PS P PLP L P P++ G+S A S A+ A S+ V +S G G
Sbjct: 376 LDPSAPPMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGS 435
Query: 66 GGCAS----FCRRALISRRSRRTRRVRA 89
A+ + R + S + + R + A
Sbjct: 436 AATAASEEMYVPRVVTSAQQKAGRTITA 463
>gi|83816964 Holliday junction recognition protein [Homo sapiens]
Length = 748
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 9 PSLPSNPLPACDYLSPLSPSSSGSSCKACSSTAASPWGPAGSSPLDTVLL 58
PSL S +PA Y S +S S G K SS W P S D L+
Sbjct: 181 PSLASPAVPAPGYCSRISRKSPGDPAKPASS--PREWDPLHPSSTDMALV 228
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 29.3 bits (64), Expect = 1.1
Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 33/134 (24%)
Query: 12 PSNPLPACDYLSP-LSPSSSGSSCKACSSTAASPWGPA----GSSPLD------------ 54
P + PA L P SP +SG A + AS P G PL
Sbjct: 712 PESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLS 771
Query: 55 -TVLLS------------DGGCGGGGCASFCRRALISRRSRRTRRVRAPLD--RMALTR- 98
T+LL+ GG GGG R AL R + +PLD R ++T
Sbjct: 772 RTLLLAAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSV 831
Query: 99 SSFSSSSFSCTSGD 112
+SFS + GD
Sbjct: 832 TSFSPDDVASPQGD 845
>gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens]
Length = 219
Score = 29.3 bits (64), Expect = 1.1
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 6 SLCPSLPSNPLPACDYLSPLSP-SSSGSSCKACSSTAASPW------GPAGSSPLDTVLL 58
SLC + S P PA L+ S SSG S + STAA W + P
Sbjct: 112 SLCLTADS-PRPARSRLTAASRVQSSGLSAASAGSTAACQWPLQPHGAHSSQRPFQAQFF 170
Query: 59 SDGGCGGGGCASFCRRALISRRSRRTRRVRAPLDRMALTRSSFSSS 104
GG G +S + L++ + + + P LT +S S+
Sbjct: 171 PSGGLSGPRSSSMPAQLLVALVGPQLPQAKLPRPSSGLTVASPGSA 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,227,547
Number of Sequences: 37866
Number of extensions: 314904
Number of successful extensions: 2095
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1940
Number of HSP's gapped (non-prelim): 258
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.