Guide to the Human Genome
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Name: ZC3H7B Sequence: fasta or formatted (977aa) NCBI GI: 27881484
Description:

zinc finger CCCH-type containing 7B

Referenced in:

Tetratricopeptide Domains
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         65           4
 C cysteine            3.4         33           1
 D aspartate           6.9         67           3
 E glutamate           6.3         62           2
 F phenylalanine       3.9         38           1
 G glycine             6.7         65           2
 H histidine           2.7         26           1
 I isoleucine          2.9         28           2
 K lysine              7.5         73           2
 L leucine            10.8        106           2
 M methionine          2.3         22           2
 N asparagine          2.7         26           2
 P proline             6.3         62           2
 Q glutamine           5.1         50           2
 R arginine            5.5         54           2
 S serine              7.7         75           3
 T threonine           4.5         44           2
 V valine              4.0         39           2
 W tryptophan          1.3         13           1
 Y tyrosine            3.0         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 7B 
ZC3H7A                0.428   zinc finger CCCH-type containing 7A 
UNC45A                0.022   smooth muscle cell associated protein-1 isoform 3 [H...
UNC45A                0.022   smooth muscle cell associated protein-1 isoform 2 [H...
UNC45B                0.021   cardiomyopathy associated 4 isoform 2 
UNC45B                0.021   cardiomyopathy associated 4 isoform 1 
TOMM34                0.017   translocase of outer mitochondrial membrane 34 [Homo...
LONRF3                0.016   LON peptidase N-terminal domain and ring finger 3 is...
TTC4                  0.015   tetratricopeptide repeat domain 4 
FKBP4                 0.015   FK506 binding protein 52 
SPAG1                 0.014   sperm associated antigen 1 
SPAG1                 0.014   sperm associated antigen 1 
TTC12                 0.013   tetratricopeptide repeat domain 12 
STIP1                 0.013   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TTC28                 0.012   tetratricopeptide repeat domain 28 
PPP5C                 0.012   protein phosphatase 5, catalytic subunit 
PPID                  0.012   peptidylprolyl isomerase D 
SMYD4                 0.012   SET and MYND domain containing 4 
FKBP5                 0.012   FK506 binding protein 5 isoform 1 
FKBP5                 0.012   FK506 binding protein 5 isoform 1 
FKBP5                 0.012   FK506 binding protein 5 isoform 1 
STUB1                 0.012   STIP1 homology and U-box containing protein 1 
TOMM70A               0.012   translocase of outer mitochondrial membrane 70 homol...
R3HDM2                0.011   R3H domain containing 2 
PRIC285               0.011   PPAR-alpha interacting complex protein 285 isoform ...
DNAJC7                0.010   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.010   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
RPAP3                 0.010   RNA polymerase II associated protein 3 isoform 3 [H...
RPAP3                 0.010   RNA polymerase II associated protein 3 isoform 1 [H...
RPAP3                 0.010   RNA polymerase II associated protein 3 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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