Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NFATC4 Sequence: fasta or formatted (964aa) NCBI GI: 209862845
Description:

nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 isoform 1

Referenced in:

T cells

Other entries for this name:
alt prot [902aa] nuclear factor of activated T-cells, cytoplasmic, calcineurin-dep...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         76           2
 C cysteine            1.9         18           2
 D aspartate           3.2         31           1
 E glutamate           7.6         73           3
 F phenylalanine       3.2         31           2
 G glycine            11.3        109           3
 H histidine           1.5         14           2
 I isoleucine          2.4         23           1
 K lysine              2.5         24           1
 L leucine             7.9         76           3
 M methionine          1.1         11           1
 N asparagine          2.0         19           2
 P proline            15.2        147           6
 Q glutamine           2.5         24           1
 R arginine            6.3         61           2
 S serine             11.3        109           4
 T threonine           3.7         36           2
 V valine              4.8         46           2
 W tryptophan          0.9          9           1
 Y tyrosine            2.8         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of activated T-cells, cytoplasmic, c... 
NFATC4                0.912   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.286   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.286   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.286   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.286   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC1                0.207   nuclear factor of activated T-cells, cytosolic compo...
NFATC2                0.204   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.204   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC1                0.204   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.203   nuclear factor of activated T-cells, cytosolic compo...
NFATC2                0.202   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC1                0.196   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.141   nuclear factor of activated T-cells, cytosolic compo...
NFAT5                 0.086   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.086   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.086   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.086   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.086   nuclear factor of activated T-cells 5 isoform a [Hom...
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.022   TBP-associated factor 4 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
COL3A1                0.020   collagen type III alpha 1 preproprotein 
COL11A2               0.019   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 1 preproprotein ...
PRB2                  0.019   proline-rich protein BstNI subfamily 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press