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Search of human proteins with 239508745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 520 e-148
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 465 e-131
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 465 e-131
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 465 e-131
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 7e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 7e-06
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 48 9e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 9e-06
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 47 1e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 47 1e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 47 1e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 47 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 2e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 5e-05
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 45 6e-05
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 44 1e-04
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 44 2e-04
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 44 2e-04
gi|91208420 bassoon protein [Homo sapiens] 44 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 3e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 42 4e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 5e-04
gi|117938768 GNAS complex locus alex [Homo sapiens] 42 7e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 7e-04
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 42 7e-04
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 42 7e-04
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 520 bits (1340), Expect = e-148
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRGC 180
RGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRGC 180
Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
Query: 241 VFTTHSKPE 249
VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 465 bits (1197), Expect = e-131
Identities = 228/251 (90%), Positives = 230/251 (91%), Gaps = 4/251 (1%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGR 178
RGRLPWVTGPRPAGSLPAAQ + A R GR R C + G A EAPQPTGGR
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQ--SPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGR 178
Query: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR
Sbjct: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
Query: 239 KLVFTTHSKPE 249
KLVFTTHSKPE
Sbjct: 239 KLVFTTHSKPE 249
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 465 bits (1197), Expect = e-131
Identities = 228/251 (90%), Positives = 230/251 (91%), Gaps = 4/251 (1%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGR 178
RGRLPWVTGPRPAGSLPAAQ + A R GR R C + G A EAPQPTGGR
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQ--SPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGR 178
Query: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR
Sbjct: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
Query: 239 KLVFTTHSKPE 249
KLVFTTHSKPE
Sbjct: 239 KLVFTTHSKPE 249
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 465 bits (1197), Expect = e-131
Identities = 228/251 (90%), Positives = 230/251 (91%), Gaps = 4/251 (1%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGR 178
RGRLPWVTGPRPAGSLPAAQ + A R GR R C + G A EAPQPTGGR
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQ--SPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGR 178
Query: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR
Sbjct: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
Query: 239 KLVFTTHSKPE 249
KLVFTTHSKPE
Sbjct: 239 KLVFTTHSKPE 249
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.1 bits (113), Expect = 7e-06
Identities = 72/215 (33%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 4 GQHGVA--PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
GQ GV P P G KA P P L PG + A PG A AG RG
Sbjct: 597 GQPGVMGFPGPKGANGEPGKAGEKG-LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGE 655
Query: 61 ----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
G G + L PP P G P +G A P RG G ++ PG
Sbjct: 656 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR--GERGFPG--ERGSPG 711
Query: 117 A---AGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSA-----GDA 166
A GPRG P GP+ A S PA A G ER AG + GD
Sbjct: 712 AQGLQGPRGLPGTPGTDGPKGA-SGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 770
Query: 167 A--GPE-APQPTGGRGCS-----RGSATASGVGGK 193
GPE AP GGRG + G A A+G G+
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGE 805
Score = 44.7 bits (104), Expect = 8e-05
Identities = 62/211 (29%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 4 GQHGVAPPPAGRERLQNKAWSPAPA---------PARPPLNQPPGGKALSTRALQPGGAL 54
G G+A P R + K AP P PP P G PG A
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP--GPAGANGEKGEVGPPGPAG 813
Query: 55 EAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQV 113
AG RG G R PP P+ G P +G P ++ AG +G AG
Sbjct: 814 SAGARGA-PGERGETGPPGPAGFAGPPGADGQ------PGAKGEQGEAGQKGDAGAPGPQ 866
Query: 114 RP-GAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAP 172
P GA GP+G VTGP+ A A A AGR G GP P
Sbjct: 867 GPSGAPGPQGPTG-VTGPKGARGAQGPPGATGFPGA-AGRVGPPGSNGNP-----GPPGP 919
Query: 173 QPTGGRGCSRGSATASGVGGKAIKKAQRIPA 203
G+ +G+ SG G+A + + PA
Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Score = 43.5 bits (101), Expect = 2e-04
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 52/221 (23%)
Query: 3 PGQHGVAPP--------PAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPG--- 51
PG+ GV+ P P G+ +A P A R P P G + PG
Sbjct: 230 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG-PQGARGFPGTPGLPGVKG 288
Query: 52 --------GAL-EAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHR 100
GA EAG G G G P P P G P G R
Sbjct: 289 HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG--------------R 334
Query: 101 SAGRGLAG-RLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACA 159
+ G AG R +PG AGP P GP P A A R E A
Sbjct: 335 TGPAGAAGARGNDGQPGPAGP----PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQG 390
Query: 160 GRSAGDAAGPEAPQPTGGRG--------CSRGSATASGVGG 192
R G+ P +P P G G ++GSA A G+ G
Sbjct: 391 PR--GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 429
Score = 40.0 bits (92), Expect = 0.002
Identities = 58/193 (30%), Positives = 68/193 (35%), Gaps = 48/193 (24%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
A PA PP Q P G L + G A AG +G R P G+P +G
Sbjct: 733 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 783
Query: 86 FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPA------- 138
GRGL G + PG AG G V P PAGS A
Sbjct: 784 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 139 --------AQFAAASGA-ARAGRRRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASG 189
A FA GA + G + E+ AG+ GDA AP P G G
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAG---APGPQGPSGAPGPQGPTGV 880
Query: 190 VGGKAIKKAQRIP 202
G K + AQ P
Sbjct: 881 TGPKGARGAQGPP 893
Score = 39.7 bits (91), Expect = 0.002
Identities = 62/208 (29%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G P AGR +P P P P + G K + PG A E G +G
Sbjct: 893 PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 61 ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
G +G P PPG G I P + G G +G +Q P
Sbjct: 951 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010
Query: 116 GAAGPRGRL-----PWVTGPRPA----GSLPAAQFAAASGAARAGRRRERACAGRSAGDA 166
GA+G RG P +TGP GS A GAA R A + G
Sbjct: 1011 GASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1070
Query: 167 AGPEAPQPTG--GRGCSRGSATASGVGG 192
P +P P G G+ RG A A G G
Sbjct: 1071 GPPGSPGPAGPTGKQGDRGEAGAQGPMG 1098
Score = 37.0 bits (84), Expect = 0.016
Identities = 62/232 (26%), Positives = 85/232 (36%), Gaps = 49/232 (21%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
PG G + P G + A +P A AP P PPG + +T L P G
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 459
Query: 59 RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
G +G + + P P+ P G+P P+ + R A RG G + + P
Sbjct: 460 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 508
Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQFAAASGAAR--AGRRRE 155
G AGP+G R P + GP+ A P AR GR +
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 568
Query: 156 RACAGR-----SAGDAAGPEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
G+ + G+ P P P G RG G A+G GKA +K
Sbjct: 569 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 620
Score = 33.9 bits (76), Expect = 0.14
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 21/170 (12%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
+P PA P Q G+A + + P G AG RG G +G R + G H
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132
Query: 84 EGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAA 143
GF + P S +G +G G +GPRG P P G P+ + A
Sbjct: 1133 RGFTGLQGLPGPPG--PSGDQGASG-----PAGPSGPRG------PPGPVG--PSGKDGA 1177
Query: 144 ASGAARAGRRRERACAGRS--AGDAAGPEAPQPTGGRGCSRGSATASGVG 191
G R +G + AG P P P G G + +G+G
Sbjct: 1178 NGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLG 1227
Score = 30.8 bits (68), Expect = 1.2
Identities = 54/196 (27%), Positives = 70/196 (35%), Gaps = 32/196 (16%)
Query: 29 PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
P PP Q P G+ G A G RG G G PP P PPG P G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177
Query: 86 FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--------RLPWVTG 129
+ + A G + G + + P GA GP+G P V+G
Sbjct: 178 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 237
Query: 130 PR----PAGSLPAAQFAAASGAARAGRRRERACAG--RSAGDAAGPEAPQPTGGRGC--- 180
P P G P + A + G+ ER G + G P P G RG
Sbjct: 238 PMGPRGPPG--PPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGL 295
Query: 181 --SRGSATASGVGGKA 194
++G A A GV G++
Sbjct: 296 DGAKGEAGAPGVKGES 311
Score = 28.9 bits (63), Expect = 4.4
Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 43 LSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSA 102
L+T + QPG + G G + + PP P P G G ++
Sbjct: 93 LATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG--------DRGDKGEKG 144
Query: 103 GRGLAGR-LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAA----SGAARAGRRRERA 157
G GR + PG GP G P GP G AAQ A +G A+ G +
Sbjct: 145 APGPRGRDGEPGTPGNPGPPGP-PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 203
Query: 158 CAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVGG 192
G AP P G +G + G GV G
Sbjct: 204 GPMGPRGPPGPAGAPGPQGFQG-NPGEPGEPGVSG 237
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.1 bits (113), Expect = 7e-06
Identities = 72/215 (33%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 4 GQHGVA--PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
GQ GV P P G KA P P L PG + A PG A AG RG
Sbjct: 528 GQPGVMGFPGPKGANGEPGKAGEKG-LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGE 586
Query: 61 ----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
G G + L PP P G P +G A P RG G ++ PG
Sbjct: 587 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR--GERGFPG--ERGSPG 642
Query: 117 A---AGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSA-----GDA 166
A GPRG P GP+ A S PA A G ER AG + GD
Sbjct: 643 AQGLQGPRGLPGTPGTDGPKGA-SGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 701
Query: 167 A--GPE-APQPTGGRGCS-----RGSATASGVGGK 193
GPE AP GGRG + G A A+G G+
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGE 736
Score = 44.7 bits (104), Expect = 8e-05
Identities = 62/211 (29%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 4 GQHGVAPPPAGRERLQNKAWSPAPA---------PARPPLNQPPGGKALSTRALQPGGAL 54
G G+A P R + K AP P PP P G PG A
Sbjct: 687 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP--GPAGANGEKGEVGPPGPAG 744
Query: 55 EAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQV 113
AG RG G R PP P+ G P +G P ++ AG +G AG
Sbjct: 745 SAGARGA-PGERGETGPPGPAGFAGPPGADGQ------PGAKGEQGEAGQKGDAGAPGPQ 797
Query: 114 RP-GAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAP 172
P GA GP+G VTGP+ A A A AGR G GP P
Sbjct: 798 GPSGAPGPQGPTG-VTGPKGARGAQGPPGATGFPGA-AGRVGPPGSNGNP-----GPPGP 850
Query: 173 QPTGGRGCSRGSATASGVGGKAIKKAQRIPA 203
G+ +G+ SG G+A + + PA
Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Score = 43.5 bits (101), Expect = 2e-04
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 52/221 (23%)
Query: 3 PGQHGVAPP--------PAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPG--- 51
PG+ GV+ P P G+ +A P A R P P G + PG
Sbjct: 161 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG-PQGARGFPGTPGLPGVKG 219
Query: 52 --------GAL-EAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHR 100
GA EAG G G G P P P G P G R
Sbjct: 220 HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG--------------R 265
Query: 101 SAGRGLAG-RLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACA 159
+ G AG R +PG AGP P GP P A A R E A
Sbjct: 266 TGPAGAAGARGNDGQPGPAGP----PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQG 321
Query: 160 GRSAGDAAGPEAPQPTGGRG--------CSRGSATASGVGG 192
R G+ P +P P G G ++GSA A G+ G
Sbjct: 322 PR--GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 360
Score = 40.0 bits (92), Expect = 0.002
Identities = 58/193 (30%), Positives = 68/193 (35%), Gaps = 48/193 (24%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
A PA PP Q P G L + G A AG +G R P G+P +G
Sbjct: 664 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 714
Query: 86 FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPA------- 138
GRGL G + PG AG G V P PAGS A
Sbjct: 715 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 139 --------AQFAAASGA-ARAGRRRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASG 189
A FA GA + G + E+ AG+ GDA AP P G G
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK-GDAG---APGPQGPSGAPGPQGPTGV 811
Query: 190 VGGKAIKKAQRIP 202
G K + AQ P
Sbjct: 812 TGPKGARGAQGPP 824
Score = 39.7 bits (91), Expect = 0.002
Identities = 62/208 (29%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G P AGR +P P P P + G K + PG A E G +G
Sbjct: 824 PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 61 ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
G +G P PPG G I P + G G +G +Q P
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 941
Query: 116 GAAGPRGRL-----PWVTGPRPA----GSLPAAQFAAASGAARAGRRRERACAGRSAGDA 166
GA+G RG P +TGP GS A GAA R A + G
Sbjct: 942 GASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1001
Query: 167 AGPEAPQPTG--GRGCSRGSATASGVGG 192
P +P P G G+ RG A A G G
Sbjct: 1002 GPPGSPGPAGPTGKQGDRGEAGAQGPMG 1029
Score = 37.0 bits (84), Expect = 0.016
Identities = 62/232 (26%), Positives = 85/232 (36%), Gaps = 49/232 (21%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
PG G + P G + A +P A AP P PPG + +T L P G
Sbjct: 332 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 390
Query: 59 RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
G +G + + P P+ P G+P P+ + R A RG G + + P
Sbjct: 391 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 439
Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQFAAASGAAR--AGRRRE 155
G AGP+G R P + GP+ A P AR GR +
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 499
Query: 156 RACAGR-----SAGDAAGPEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
G+ + G+ P P P G RG G A+G GKA +K
Sbjct: 500 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 551
Score = 33.9 bits (76), Expect = 0.14
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 21/170 (12%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
+P PA P Q G+A + + P G AG RG G +G R + G H
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1063
Query: 84 EGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAA 143
GF + P S +G +G G +GPRG P P G P+ + A
Sbjct: 1064 RGFTGLQGLPGPPG--PSGDQGASG-----PAGPSGPRG------PPGPVG--PSGKDGA 1108
Query: 144 ASGAARAGRRRERACAGRS--AGDAAGPEAPQPTGGRGCSRGSATASGVG 191
G R +G + AG P P P G G + +G+G
Sbjct: 1109 NGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLG 1158
Score = 30.8 bits (68), Expect = 1.2
Identities = 54/196 (27%), Positives = 70/196 (35%), Gaps = 32/196 (16%)
Query: 29 PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
P PP Q P G+ G A G RG G G PP P PPG P G
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 108
Query: 86 FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--------RLPWVTG 129
+ + A G + G + + P GA GP+G P V+G
Sbjct: 109 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 168
Query: 130 PR----PAGSLPAAQFAAASGAARAGRRRERACAG--RSAGDAAGPEAPQPTGGRGC--- 180
P P G P + A + G+ ER G + G P P G RG
Sbjct: 169 PMGPRGPPG--PPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGL 226
Query: 181 --SRGSATASGVGGKA 194
++G A A GV G++
Sbjct: 227 DGAKGEAGAPGVKGES 242
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 47.8 bits (112), Expect = 9e-06
Identities = 60/216 (27%), Positives = 73/216 (33%), Gaps = 29/216 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G + PP G +A P P P PPG PG G
Sbjct: 1232 PGPPGSSGPP-GPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGE 1290
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLI---------ALFPSSQNRHRSAG----RGLAGR 109
G L PP P PPG P ++GF FP Q H G +GL G
Sbjct: 1291 PGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGP 1350
Query: 110 LQQVRP-GAAGPRG------------RLPWVTG-PRPAGSLPAAQFAAASGAARAGRRRE 155
+ P G GPRG R+P + G P G A G + G + E
Sbjct: 1351 PGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGE 1410
Query: 156 RACAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVG 191
GR D P +P P G +G + G G
Sbjct: 1411 PGLDGRRGVDGV-PGSPGPPGRKGDTGEDGYPGGPG 1445
Score = 39.3 bits (90), Expect = 0.003
Identities = 51/202 (25%), Positives = 69/202 (34%), Gaps = 32/202 (15%)
Query: 4 GQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ-------PPGGKALSTRALQPGGALEA 56
G G PP + + P PP + G + R +PG
Sbjct: 951 GAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPP 1010
Query: 57 GTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
G G G + PP P PPGS GF+ FP GL G Q PG
Sbjct: 1011 GFHRGEPGEKGQPGPPGPPGPPGSTGLRGFI---GFP-----------GLPG--DQGEPG 1054
Query: 117 AAGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGR--SAGDAA--GPE 170
+ GP G + GP+ PA+ F G C G ++G+ G +
Sbjct: 1055 SPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPG---SPGCPGHFGASGEQGLPGIQ 1111
Query: 171 APQPTGGRGCSRGSATASGVGG 192
P+ + GR GS+ G G
Sbjct: 1112 GPRGSPGRPGPPGSSGPPGCPG 1133
Score = 38.1 bits (87), Expect = 0.007
Identities = 59/197 (29%), Positives = 68/197 (34%), Gaps = 36/197 (18%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG+HG P G + P P A P L+ G K R PG A G G R
Sbjct: 673 PGRHG----PPGFDGPPGPKGFPGPQGA-PGLSGSDGHKG---RPGTPGTAEIPGPPGFR 724
Query: 63 E-------GHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP 115
G + P P PPGSP G I P+ + RGL+G P
Sbjct: 725 GDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSG-----VP 779
Query: 116 GAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPT 175
G GPRG P G +P F G GR G A P P P
Sbjct: 780 GIKGPRGD-PGCPGAEGPAGIPG--FLGLKGP--KGRE----------GHAGFPGVPGPP 824
Query: 176 GGRGCSRGSATASGVGG 192
G C RG+ G G
Sbjct: 825 -GHSCERGAPGIPGQPG 840
Score = 31.2 bits (69), Expect = 0.88
Identities = 41/159 (25%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 37 PPGGKALSTRALQPGGALEAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIAL 91
PPG K PG +G +G G G PP S PPG P G +
Sbjct: 1083 PPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRG 1142
Query: 92 FPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAG 151
P RGL G PG GP P + GP + L G
Sbjct: 1143 QPGEMG--DPGPRGLQG-----DPGIPGP----PGIKGPSGSPGLNGLH----------G 1181
Query: 152 RRRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASGV 190
+ ++ G S GP P G RG + G+
Sbjct: 1182 LKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGI 1220
Score = 30.0 bits (66), Expect = 2.0
Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G+ + L W PP + P G A P G G +G
Sbjct: 502 PGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPPG--NKGAKGDM 559
Query: 63 -----EGHRRLRQPPTPSAPPGSP---LHEGFLLIALFPSSQNRHRSA---GRGLAGRLQ 111
+GH+ R P P PG P +G P H A G+G G L
Sbjct: 560 VVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLG 619
Query: 112 QVRPGAAGPRGRLPWVTGPRPAG 134
PG AGP G P + P P G
Sbjct: 620 P--PGKAGPVGP-PGLGFPGPPG 639
Score = 28.9 bits (63), Expect = 4.4
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 34/141 (24%)
Query: 2 GPGQHG-VAPP-PAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTR 59
G GQ G V PP PAG + L P RP + PPG + PG + G
Sbjct: 853 GKGQPGDVGPPGPAGMKGLPG-------LPGRPGAHGPPGLPGI------PGPFGDDGLP 899
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG----RGLAGRLQQVRP 115
G PP P P G P GF P ++ + G +G++G P
Sbjct: 900 G----------PPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSG-----LP 944
Query: 116 GAAGPRGRLPWVTGPRPAGSL 136
G G RG + P G +
Sbjct: 945 GDRGLRGAKGAIGPPGDEGEM 965
Score = 28.5 bits (62), Expect = 5.7
Identities = 62/217 (28%), Positives = 68/217 (31%), Gaps = 51/217 (23%)
Query: 4 GQHGVAPP-PAGRERLQNKAWSPA-PA------PARPPLNQPPGGKALSTRALQPGGALE 55
G V PP P G + + P PA P + L+ PG K PG
Sbjct: 737 GSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGP 796
Query: 56 AGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLA 107
AG G GREGH P PPG G I P GL
Sbjct: 797 AGIPGFLGLKGPKGREGHAGF---PGVPGPPGHSCERGAPGIPGQP-----------GLP 842
Query: 108 GRLQQVRPGAAGPRGRLPWVTGPRPAG--SLPAAQFAAASGAARAGRRRERACAGRSA-- 163
G PGA G +G+ V P PAG LP R G G
Sbjct: 843 G--YPGSPGAPGGKGQPGDVGPPGPAGMKGLPGL-------PGRPGAHGPPGLPGIPGPF 893
Query: 164 GDAAGPEAPQPTGGRGC--------SRGSATASGVGG 192
GD P P P G RG RG A G G
Sbjct: 894 GDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPG 930
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 47.8 bits (112), Expect = 9e-06
Identities = 63/203 (31%), Positives = 76/203 (37%), Gaps = 27/203 (13%)
Query: 3 PGQHGVAPPPAGR-ERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
PG+ G PP + E+ P+ P P PPG PG AG G
Sbjct: 1170 PGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPG---PPG---------PPGIQGPAGLDGL 1217
Query: 61 -GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR----GLAGRL-QQVR 114
G++G LR P P+ PPG GF P G+ G GR +
Sbjct: 1218 DGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGE 1277
Query: 115 PGAAGPRGRLPWVTG----PRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPE 170
PGA GP+GR P G P P G A +A G ER AG G P
Sbjct: 1278 PGAMGPQGR-PGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAG-LPGQPGPPG 1335
Query: 171 APQPTGGRGCSRGSATASGVGGK 193
P P G G + G+A G GK
Sbjct: 1336 HPGPPGEPG-TDGAAGKEGPPGK 1357
Score = 34.7 bits (78), Expect = 0.080
Identities = 58/239 (24%), Positives = 71/239 (29%), Gaps = 81/239 (33%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGGALEAG 57
PG G+ P AG + L K P P PA PP L PPG K + PG + G
Sbjct: 1203 PGPPGIQGP-AGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCG 1261
Query: 58 TRG--------------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
G G G + PP PPG P G I+ +R +
Sbjct: 1262 KPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGE 1321
Query: 104 RGLAGRLQQVRP-------------------------------------------GAAGP 120
RGLAG Q P G AG
Sbjct: 1322 RGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGE 1381
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRG 179
+GR GP +GS+ AG+ P AP P+G G
Sbjct: 1382 KGRAGMPGGPGKSGSMGPVG------------------PPGPAGERGHPGAPGPSGSPG 1422
Score = 32.0 bits (71), Expect = 0.52
Identities = 53/177 (29%), Positives = 59/177 (33%), Gaps = 34/177 (19%)
Query: 50 PGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLA 107
PG G RG G G R PP P PPG P G + P Q RGL
Sbjct: 1023 PGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFP---GAVGSPGLPGLQGE-----RGLT 1074
Query: 108 GRL----------QQVRPGAAGPRGRLPWVTGPRP-AGSL-------PAAQFAAASGAAR 149
G Q PGA GP G LP + G R GS P
Sbjct: 1075 GLTGDKGEPGPPGQPGYPGATGPPG-LPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGP 1133
Query: 150 AGRRRERACAGRSA-----GDAAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRI 201
AG R ER G S G P P P G G + G +A K ++ I
Sbjct: 1134 AGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGI 1190
Score = 29.3 bits (64), Expect = 3.3
Identities = 48/166 (28%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 37 PPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSA--PPGSPLHEGFLLIALFPS 94
P GGK PG E G RG + R P A P G G L + P
Sbjct: 335 PKGGKGERGLPGPPGSKGEKGARGN-DCVRISPDAPLQCAEGPKGEKGESGALGPSGLPG 393
Query: 95 SQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRR 154
S G G ++ V PG G GR + P G F G A G
Sbjct: 394 STGEKGQKGEKGDGGIKGV-PGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLA--GEPG 450
Query: 155 ERACAGR-------SAGDAAGPEAPQPTGGRGCSRGSATASGVGGK 193
G + GD GP P P G +G S G G GGK
Sbjct: 451 PPGLPGPPGIGLPGTPGDPGGP--PGPKGDKG-SSGIPGKEGPGGK 493
Score = 27.7 bits (60), Expect = 9.7
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-GREGHRRL 68
P P G++ + +P +P P G + L PG E G G G G L
Sbjct: 1475 PGPPGKDGAPGRPGAPG-SPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGL 1533
Query: 69 RQPPTPSAPPG 79
PP P PPG
Sbjct: 1534 PGPPGPQGPPG 1544
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 47.4 bits (111), Expect = 1e-05
Identities = 64/214 (29%), Positives = 81/214 (37%), Gaps = 46/214 (21%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 1191 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1243
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 1244 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPGN 1290
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLP------AAQFAAASG-AARAGRRRERACAGRS 162
G GP+G V P P G P A+ G AG++ ER G
Sbjct: 1291 -----QGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG-- 1343
Query: 163 AGDAAGPEAPQPTGGRGCSRGSATASGVGGKAIK 196
G G P P G G RG G G++I+
Sbjct: 1344 GGGFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1376
Score = 41.6 bits (96), Expect = 7e-04
Identities = 57/214 (26%), Positives = 70/214 (32%), Gaps = 45/214 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 920 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 979
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF
Sbjct: 980 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF------------- 1026
Query: 100 RSAGRGLAGRLQQVRPGAAGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA 157
G G A GP+G LP + G LP A+ + G
Sbjct: 1027 -DDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGAD----GVPGFPG 1081
Query: 158 CAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVG 191
GR AGP+ P+ G +G GVG
Sbjct: 1082 LPGREG--IAGPQGPKGDRGSRGEKGDPGKDGVG 1113
Score = 37.4 bits (85), Expect = 0.012
Identities = 69/245 (28%), Positives = 83/245 (33%), Gaps = 70/245 (28%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 778 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 834
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 835 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 886
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 887 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943
Query: 141 ----FAAASG-AARAGRRRERACAGR--SAGDAAGP------EAPQPTGGRGCSRGSATA 187
F G GR G+ S G+A P AP P G RG S G A A
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLAGA 1002
Query: 188 SGVGG 192
G G
Sbjct: 1003 PGPAG 1007
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 729 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 788
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 789 P----------LGPAGPALQTVPGPQGPPG 808
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 1353 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1411
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 1412 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1461
Score = 27.7 bits (60), Expect = 9.7
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 30/181 (16%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P + L +K +P P G K P G + G
Sbjct: 1147 PGFAGFPGPAGPKGNLGSKGERGSPGPK--------GEKGEPGSIFSPDGGALGPAQKGA 1198
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA---- 118
+G R PP P PG G FP R GL G ++ PG A
Sbjct: 1199 KGEPGFRGPPGPYGRPGYKGEIG------FPGRPG--RPGMNGLKG--EKGEPGDASLGF 1248
Query: 119 GPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGR 178
G RG +P GP P ++ A + R G GP P P G +
Sbjct: 1249 GMRG-MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ-----GP--PGPKGAK 1300
Query: 179 G 179
G
Sbjct: 1301 G 1301
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 47.4 bits (111), Expect = 1e-05
Identities = 64/214 (29%), Positives = 81/214 (37%), Gaps = 46/214 (21%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 776 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 828
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 829 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPGN 875
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLP------AAQFAAASG-AARAGRRRERACAGRS 162
G GP+G V P P G P A+ G AG++ ER G
Sbjct: 876 -----QGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG-- 928
Query: 163 AGDAAGPEAPQPTGGRGCSRGSATASGVGGKAIK 196
G G P P G G RG G G++I+
Sbjct: 929 GGGFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 961
Score = 41.6 bits (96), Expect = 7e-04
Identities = 57/214 (26%), Positives = 70/214 (32%), Gaps = 45/214 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 505 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 564
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF
Sbjct: 565 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF------------- 611
Query: 100 RSAGRGLAGRLQQVRPGAAGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA 157
G G A GP+G LP + G LP A+ + G
Sbjct: 612 -DDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGAD----GVPGFPG 666
Query: 158 CAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVG 191
GR AGP+ P+ G +G GVG
Sbjct: 667 LPGREG--IAGPQGPKGDRGSRGEKGDPGKDGVG 698
Score = 37.4 bits (85), Expect = 0.012
Identities = 69/245 (28%), Positives = 83/245 (33%), Gaps = 70/245 (28%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 363 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 419
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 471
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 472 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528
Query: 141 ----FAAASG-AARAGRRRERACAGR--SAGDAAGP------EAPQPTGGRGCSRGSATA 187
F G GR G+ S G+A P AP P G RG S G A A
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLAGA 587
Query: 188 SGVGG 192
G G
Sbjct: 588 PGPAG 592
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 314 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 373
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 374 P----------LGPAGPALQTVPGPQGPPG 393
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 938 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 996
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 997 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1046
Score = 27.7 bits (60), Expect = 9.7
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 30/181 (16%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P + L +K +P P G K P G + G
Sbjct: 732 PGFAGFPGPAGPKGNLGSKGERGSPGPK--------GEKGEPGSIFSPDGGALGPAQKGA 783
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA---- 118
+G R PP P PG G FP R GL G ++ PG A
Sbjct: 784 KGEPGFRGPPGPYGRPGYKGEIG------FPGRPG--RPGMNGLKG--EKGEPGDASLGF 833
Query: 119 GPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGR 178
G RG +P GP P ++ A + R G GP P P G +
Sbjct: 834 GMRG-MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ-----GP--PGPKGAK 885
Query: 179 G 179
G
Sbjct: 886 G 886
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 47.4 bits (111), Expect = 1e-05
Identities = 64/214 (29%), Positives = 81/214 (37%), Gaps = 46/214 (21%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 956 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1008
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 1009 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPGN 1055
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLP------AAQFAAASG-AARAGRRRERACAGRS 162
G GP+G V P P G P A+ G AG++ ER G
Sbjct: 1056 -----QGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG-- 1108
Query: 163 AGDAAGPEAPQPTGGRGCSRGSATASGVGGKAIK 196
G G P P G G RG G G++I+
Sbjct: 1109 GGGFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1141
Score = 41.6 bits (96), Expect = 7e-04
Identities = 57/214 (26%), Positives = 70/214 (32%), Gaps = 45/214 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 685 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 744
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF
Sbjct: 745 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF------------- 791
Query: 100 RSAGRGLAGRLQQVRPGAAGPRG--RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA 157
G G A GP+G LP + G LP A+ + G
Sbjct: 792 -DDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGAD----GVPGFPG 846
Query: 158 CAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVG 191
GR AGP+ P+ G +G GVG
Sbjct: 847 LPGREG--IAGPQGPKGDRGSRGEKGDPGKDGVG 878
Score = 37.4 bits (85), Expect = 0.012
Identities = 69/245 (28%), Positives = 83/245 (33%), Gaps = 70/245 (28%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 543 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 599
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 651
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 652 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708
Query: 141 ----FAAASG-AARAGRRRERACAGR--SAGDAAGP------EAPQPTGGRGCSRGSATA 187
F G GR G+ S G+A P AP P G RG S G A A
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLAGA 767
Query: 188 SGVGG 192
G G
Sbjct: 768 PGPAG 772
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 494 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 553
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 554 P----------LGPAGPALQTVPGPQGPPG 573
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 1118 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1176
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 1177 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1226
Score = 27.7 bits (60), Expect = 9.7
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 30/181 (16%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P + L +K +P P G K P G + G
Sbjct: 912 PGFAGFPGPAGPKGNLGSKGERGSPGPK--------GEKGEPGSIFSPDGGALGPAQKGA 963
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA---- 118
+G R PP P PG G FP R GL G ++ PG A
Sbjct: 964 KGEPGFRGPPGPYGRPGYKGEIG------FPGRPG--RPGMNGLKG--EKGEPGDASLGF 1013
Query: 119 GPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGR 178
G RG +P GP P ++ A + R G GP P P G +
Sbjct: 1014 GMRG-MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQ-----GP--PGPKGAK 1065
Query: 179 G 179
G
Sbjct: 1066 G 1066
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 47.4 bits (111), Expect = 1e-05
Identities = 56/190 (29%), Positives = 69/190 (36%), Gaps = 31/190 (16%)
Query: 2 GPGQHGVAPPPAGRERLQ-----NKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEA 56
G Q PPP G+ + N++ P P P +P P GG PG
Sbjct: 64 GGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERP 123
Query: 57 GTRGGREGHRRLRQPPTPSAPP--------GSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
+GG + HR P P PP G P H G P N+ RSA R G
Sbjct: 124 PPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSA-RSPPG 181
Query: 109 RLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAG 168
+ Q GP P G +P G P + G AG ++ A AG G
Sbjct: 182 KPQ-------GP----PQQEGNKPQGPPPPGK---PQGPPPAGGNPQQPQA-PPAGKPQG 226
Query: 169 PEAPQPTGGR 178
P P P GGR
Sbjct: 227 P-PPPPQGGR 235
Score = 30.4 bits (67), Expect = 1.5
Identities = 39/171 (22%), Positives = 49/171 (28%), Gaps = 10/171 (5%)
Query: 11 PPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
P R + N+ P P P +P P GG PG +GG +
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ---GP 92
Query: 71 PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLP----- 125
PP P P P G P R +G G P G R P
Sbjct: 93 PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQG--GNQSHRPPPPPGKPERPPPQGGN 150
Query: 126 WVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTG 176
GP P P +R+ R G + P+ P P G
Sbjct: 151 QSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPG 201
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 2e-05
Identities = 61/216 (28%), Positives = 78/216 (36%), Gaps = 32/216 (14%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ-----PPGGKALSTRALQPGGALEAG 57
PG G P G A +P AR P PPG K S PG + G
Sbjct: 388 PGADG-QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 58 TRG--------------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
+G G EG R R P P+ PG P G FP + +
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG--VAGP 504
Query: 104 RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSA 163
+G AG ++ PG AGP+G P G LP A+ +G+ + + A
Sbjct: 505 KGPAG--ERGSPGPAGPKGS-PGEAGRPGEAGLPGAK--GLTGSPGSPGPDGKTGPPGPA 559
Query: 164 GDAAGPEAPQPTGGRGCS-----RGSATASGVGGKA 194
G P P P G RG + G A+G GKA
Sbjct: 560 GQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Score = 43.1 bits (100), Expect = 2e-04
Identities = 59/218 (27%), Positives = 75/218 (34%), Gaps = 46/218 (21%)
Query: 3 PGQHGVAPP--------PAGRERLQNKAWSPA-PAPARPPLNQPPGGKALSTRALQPGGA 53
PG+ G + P P G+ +A P P PP P G + L A PG
Sbjct: 208 PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP--GPQGARGLPGTAGLPG-- 263
Query: 54 LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ 111
G RG G +G + P P PGSP G + RGL G +
Sbjct: 264 -MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA-----------PGQMGPRGLPG--E 309
Query: 112 QVRPGAAGPRGRL-----------PWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAG 160
+ RPGA GP G P TGP P A A + R E
Sbjct: 310 RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 161 R------SAGDAAGPEAPQPTGGRGCSRGSATASGVGG 192
R AAGP G+ ++G+ A G+ G
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Score = 43.1 bits (100), Expect = 2e-04
Identities = 63/218 (28%), Positives = 78/218 (35%), Gaps = 40/218 (18%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALST---------RALQPG 51
PG G+ P G K P PA RP PPG + + A +PG
Sbjct: 535 PGAKGLTGSP-GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593
Query: 52 GALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
A E G G G++G + PP P+ P G +G A P Q AG
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG---PAGSPGFQGLPGPAG 650
Query: 104 -RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGA----ARAGRRRERAC 158
G AG +PG G G L P P+G+ F G AG R
Sbjct: 651 PPGEAG-----KPGEQGVPGDL---GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 159 AGR--SAGDAAGPEAPQPTGGRGCS--RGSATASGVGG 192
G + GDA P AP G G G A+G+ G
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 740
Score = 41.2 bits (95), Expect = 9e-04
Identities = 67/218 (30%), Positives = 77/218 (35%), Gaps = 47/218 (21%)
Query: 3 PGQHGVAPPP-----AGRERLQNKAWSPAPA----PARPPLNQPPGGKALSTRALQPGGA 53
PG G A PP AG+E + PA PP P G+ S A P GA
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 54 LE-------AGTRG-----GREGHRRLRQPPTPSAPPGS------------PLHEGFLLI 89
AG RG G+ G R P PS PG P G +
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1005
Query: 90 ALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFA--AASG 146
A P R + G G GR PGA G RG TGP P A A
Sbjct: 1006 AGPPGESGREGAPGAEGSPGR--DGSPGAKGDRGE----TGPAGPPGAPGAPGAPGPVGP 1059
Query: 147 AARAGRRRERACAGRSAG----DAAGPEAPQ-PTGGRG 179
A ++G R E AG + A GP PQ P G +G
Sbjct: 1060 AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKG 1097
Score = 38.1 bits (87), Expect = 0.007
Identities = 62/221 (28%), Positives = 79/221 (35%), Gaps = 33/221 (14%)
Query: 2 GP-GQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPG------GAL 54
GP G G A PP GR+ + + P P P P PPG L G G +
Sbjct: 118 GPRGPRGPAGPP-GRDGIPGQPGLPGP-PGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175
Query: 55 EAGTRGGREGHRRLRQPPTPSAP---------PGSPLHEGFLLIALFPSSQNRHRSAGR- 104
G G R L PP P PG P G + P ++ G
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 105 GLAGRL-QQVRPGAAGPRGR-----LPWVTGPRPAGSLPAAQFAAASGAARA--GRRRER 156
G GR ++ PG G RG LP + G R L A+ A + G E
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295
Query: 157 ACAGRSA-----GDAAGPEAPQPTGGRGCSRGSATASGVGG 192
G+ G+ P AP P G RG + G+ A+G G
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARG-NDGATGAAGPPG 335
Score = 37.4 bits (85), Expect = 0.012
Identities = 61/210 (29%), Positives = 73/210 (34%), Gaps = 54/210 (25%)
Query: 3 PGQHGVA-----PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGG 52
PGQ G P P+G Q + + P P PP L PPG S R PG
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE---SGREGAPGA 1020
Query: 53 ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
G R G G + R P+ PPG+P G G
Sbjct: 1021 EGSPG-RDGSPGAKGDRGETGPAGPPGAP-----------------------GAPGAPGP 1056
Query: 113 VRP-GAAGPRGRLPWVTGPR-PAGSL-------PAAQFAAASGAARAGRRRERACAG-RS 162
V P G +G RG TGP PAG + PA G + +R G R
Sbjct: 1057 VGPAGKSGDRGE----TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRG 1112
Query: 163 AGDAAGPEAPQPTGGRGCSRGSATASGVGG 192
GP P P G G +G + ASG G
Sbjct: 1113 FSGLQGP--PGPPGSPG-EQGPSGASGPAG 1139
Score = 34.3 bits (77), Expect = 0.10
Identities = 55/194 (28%), Positives = 71/194 (36%), Gaps = 26/194 (13%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
GP +P G L P PA A PG K S + G A G RG
Sbjct: 749 GPKGADGSPGKDGVRGLTGPIGPPGPAGA-------PGDKGESGPS---GPAGPTGARGA 798
Query: 62 REGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGP 120
G R PP P+ G P +G P ++ AG +G AG P AGP
Sbjct: 799 -PGDRGEPGPPGPAGFAGPPGADGQ------PGAKGEPGDAGAKGDAGPPGPAGP--AGP 849
Query: 121 RGRLPWVTGPRPAGSLPAAQFAAASG-AARAGRRRERACAGRSAGDAAGPEAPQPTGGRG 179
G + V P G+ +A A+G AGR +G AGP P G+
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGN-----AGPPGPPGPAGKE 904
Query: 180 CSRGSATASGVGGK 193
+G +G G+
Sbjct: 905 GGKGPRGETGPAGR 918
Score = 33.9 bits (76), Expect = 0.14
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 24/156 (15%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G AP P G PA P+ P G + + G E G +G R
Sbjct: 1048 PGAPG-APGPVGPAGKSGDRGETGPAGPAGPVG-PVGARGPAGPQGPRGDKGETGEQGDR 1105
Query: 63 --EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RGLAGRLQQV 113
+GHR P PPGSP +G + + SAG GL G +
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI--- 1162
Query: 114 RPGAAGPRGRL--------PWVTGPRPAGSLPAAQF 141
G GPRGR P GP P+A F
Sbjct: 1163 --GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGF 1196
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.4 bits (106), Expect = 5e-05
Identities = 61/207 (29%), Positives = 77/207 (37%), Gaps = 28/207 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--------PARPPLNQPPGGKALSTRALQPGGAL 54
PG+ G+A P G+ LQ P P P P L P G + S +PG
Sbjct: 2155 PGERGMAGPE-GKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPG--- 2210
Query: 55 EAGTRG----GREGHRRLRQPPTPSA---PPGSPLHEGFLLIALFPSSQNRHRSAGR-GL 106
E G G G G L PP PS P GSP G + P + R ++G+ G
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGD 2270
Query: 107 AGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDA 166
G PG G G LP GP+ A A G G + E+ G AGD
Sbjct: 2271 RGS-----PGVPGSPG-LPGPVGPKGEPGPTGAPGQAVVGLP--GAKGEKGAPGGLAGDL 2322
Query: 167 AGPEAPQPTGGRGCSRGSATASGVGGK 193
G + G RG +G G+
Sbjct: 2323 VGEPGAKGDRGLPGPRGEKGEAGRAGE 2349
Score = 42.7 bits (99), Expect = 3e-04
Identities = 56/184 (30%), Positives = 63/184 (34%), Gaps = 23/184 (12%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
PG+ G P P+G + P P P P G K PG E G G
Sbjct: 1364 PGRKG-DPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPG-EGGIAPG 1421
Query: 62 REGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPR 121
G L P P P G P +G + GL G Q PG GPR
Sbjct: 1422 EPGLPGLPGSPGPQGPVGPPGKKG---------EKGDSEDGAPGLPG--QPGSPGEQGPR 1470
Query: 122 GRLPWVTGPRPAGSLPAAQFAAASGAAR-----AGRRRERACAGRSAGDAAGPEAPQ-PT 175
G P GP+ P A R AG R AGR A GPE P PT
Sbjct: 1471 GP-PGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPG--AKGPEGPPGPT 1527
Query: 176 GGRG 179
G +G
Sbjct: 1528 GRQG 1531
Score = 39.3 bits (90), Expect = 0.003
Identities = 58/185 (31%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
GPG+ G+AP G L SP P P PP + G + PG +
Sbjct: 1412 GPGEGGIAP---GEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPG-------QP 1461
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAG 119
G G + R PP P G G L A + AG RGL G RPGA G
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG--VAGRPGAKG 1519
Query: 120 PRGRLPWVTGPRPAGSLPAAQ-FAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGR 178
P G P TG + P A G A AG + E+ GD GP P+ G
Sbjct: 1520 PEGP-PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEK-------GD-VGPAGPRGATGV 1570
Query: 179 GCSRG 183
RG
Sbjct: 1571 QGERG 1575
Score = 36.2 bits (82), Expect = 0.027
Identities = 58/217 (26%), Positives = 75/217 (34%), Gaps = 43/217 (19%)
Query: 3 PGQHGVA-----PPPAGRERLQ-NKAWSPAPA-----PARPPLNQPPGGKALSTRALQPG 51
PG+ G+ P P G L + P P+ P +P + PG A +PG
Sbjct: 1999 PGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPG 2058
Query: 52 GALEAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGL 106
E G +G GR+G L P P PPG + G GL
Sbjct: 2059 ERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVD---------------EPGPGL 2103
Query: 107 AGRLQQVRPGAAGPRGR--LPWVTGPRPAGSLPAAQFAAASGAARA-----GRRRERACA 159
+G +Q PG G +G GP+ +P + R G ER A
Sbjct: 2104 SG--EQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMA 2161
Query: 160 G-RSAGDAAGPEAPQ-PTGGRGCSRGSATASGVGGKA 194
G GP P P GG G G A G+ G A
Sbjct: 2162 GPEGKPGLQGPRGPPGPVGGHG-DPGPPGAPGLAGPA 2197
Score = 32.0 bits (71), Expect = 0.52
Identities = 59/222 (26%), Positives = 66/222 (29%), Gaps = 66/222 (29%)
Query: 30 ARPPLNQ-PPGGKALSTRALQPGGALEAGTRG-----------------GREGHRRLRQP 71
A PP + PPG K R PG G G G+ G R LR
Sbjct: 1603 AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGA 1662
Query: 72 PTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------------GLAGRLQQVRPGA- 117
P P G +G P R+ S G G GRL PGA
Sbjct: 1663 PGVRGPVGEKGDQG------DPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAR 1716
Query: 118 ----------AGPRG-----RLPWVTGPR-------PAGSLPAAQFAAASGAARAGRRRE 155
GPRG LP G R P G P A G R
Sbjct: 1717 EKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPG--PQGDPGVRGPAGEKGDRGP 1774
Query: 156 RACAGRSAGD----AAGPEAPQPTGGRGCSRGSATASGVGGK 193
GRS D AAGP P G+ G G+ G+
Sbjct: 1775 PGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGE 1816
Score = 30.8 bits (68), Expect = 1.2
Identities = 55/219 (25%), Positives = 68/219 (31%), Gaps = 48/219 (21%)
Query: 3 PGQHGVA-----PPPAGRERLQNKAWS-----PAPAPARPPLNQPPGGKALSTRALQPGG 52
PG+ G+ P P G ++ A P R L+ PG S P G
Sbjct: 1742 PGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSG----PNG 1797
Query: 53 ALEAGTRGGREGHRRLRQP---PTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A GR+G LR P PS PPG P G GL G+
Sbjct: 1798 AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPG--------------EDGKPGLNGK 1843
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAG----RSAGD 165
PG G GR G + A+ R G + ER G +
Sbjct: 1844 --NGEPGDPGEDGR----KGEK-------GDSGASGREGRDGPKGERGAPGILGPQGPPG 1890
Query: 166 AAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRIPAE 204
GP P G G G+ G K Q +P E
Sbjct: 1891 LPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGE 1929
Score = 28.9 bits (63), Expect = 4.4
Identities = 38/138 (27%), Positives = 46/138 (33%), Gaps = 19/138 (13%)
Query: 4 GQHGVAPPP-----AGRERLQNKAWSPAP--APARPPLNQPPGGKALSTRALQPGGALEA 56
G G A PP AG + + P AP + L P G + + G E
Sbjct: 2641 GDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEK 2700
Query: 57 GTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
G RG G G+ PP P G EG G+ G
Sbjct: 2701 GERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPG 2760
Query: 109 ----RLQQVRPGAAGPRG 122
R +Q RPG AGPRG
Sbjct: 2761 APGERGEQGRPGPAGPRG 2778
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 45.1 bits (105), Expect = 6e-05
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 50 PGGALEAGTRGGREGHRRLRQPPT-PSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
PG A A R + R P P PP P F + ++ R RSA A
Sbjct: 87 PGAAPPAEFRASARSAQGSRDVPAGPGFPPRLP--RPFTSASFSNQTRLRRRSASALPAP 144
Query: 109 RL--QQVRPGAAGPRGRLPWV-TGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGD 165
RL Q+ PG + P R P PR G AA AA AA GR R AGR A
Sbjct: 145 RLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQ-AAGGGRSRSAFVAGRDAAL 203
Query: 166 AAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRIP 202
A + P+ G G RG G G + + + P
Sbjct: 204 ACA-QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPP 239
Score = 31.2 bits (69), Expect = 0.88
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 2 GPGQHGVAPPP------AGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALE 55
GPG P P + + RL+ ++ S PAP P PG + R PGG
Sbjct: 111 GPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASPGCSSPGVRG--PGGGAS 168
Query: 56 AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG--RGLAGRLQQV 113
RGG + S G R R AG RG+ RL
Sbjct: 169 PRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAG 228
Query: 114 RPGAAGPRG--RLP-----WVTGPRP 132
A PRG R P W+ RP
Sbjct: 229 ERPAPRPRGPPRAPARGARWLRPRRP 254
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 45.1 bits (105), Expect = 6e-05
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 50 PGGALEAGTRGGREGHRRLRQPPT-PSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
PG A A R + R P P PP P F + ++ R RSA A
Sbjct: 87 PGAAPPAEFRASARSAQGSRDVPAGPGFPPRLP--RPFTSASFSNQTRLRRRSASALPAP 144
Query: 109 RL--QQVRPGAAGPRGRLPWV-TGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGD 165
RL Q+ PG + P R P PR G AA AA AA GR R AGR A
Sbjct: 145 RLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQ-AAGGGRSRSAFVAGRDAAL 203
Query: 166 AAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRIP 202
A + P+ G G RG G G + + + P
Sbjct: 204 ACA-QLPRRPRGAGARRGMRRRLGAGERPAPRPRGPP 239
Score = 31.2 bits (69), Expect = 0.88
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 2 GPGQHGVAPPP------AGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALE 55
GPG P P + + RL+ ++ S PAP P PG + R PGG
Sbjct: 111 GPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASPGCSSPGVRG--PGGGAS 168
Query: 56 AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG--RGLAGRLQQV 113
RGG + S G R R AG RG+ RL
Sbjct: 169 PRARGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAG 228
Query: 114 RPGAAGPRG--RLP-----WVTGPRP 132
A PRG R P W+ RP
Sbjct: 229 ERPAPRPRGPPRAPARGARWLRPRRP 254
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 43.9 bits (102), Expect = 1e-04
Identities = 60/197 (30%), Positives = 73/197 (37%), Gaps = 19/197 (9%)
Query: 3 PGQHG--VAPPPAGRERLQNKAWS-PAPAPARPPLNQPPGGKALSTRALQPGGALEAGT- 58
P HG V A LQ W P AP + L Q G LS+ + PGG G
Sbjct: 552 PAVHGGLVGQAVAQHRLLQRLGWRLPGQAPGQELLGQARPGGGLSSLSGGPGGGSGVGRW 611
Query: 59 ----RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVR 114
R E A PG P G LL A Q R AG L GRL
Sbjct: 612 QLPGRAAAEDVAEAAAKVLEGAGPGRP-RRGQLLRAA-GLGQARGGGAGAWLRGRLGL-- 667
Query: 115 PGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQP 174
GP +P V RP S +A+ A G +RA + RA + +A + QP
Sbjct: 668 --GWGPTACVPVVAARRPDTS--SARSGACCGCSRANSQYWRASSRAAATACNSQNSLQP 723
Query: 175 TGGRGCSRGSATASGVG 191
RG + G A + G
Sbjct: 724 ---RGAAAGEAEGAEEG 737
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/137 (33%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPAGSLP 137
G L PRP P
Sbjct: 130 AG-LHRSREPRPQDGTP 145
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/137 (33%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPAGSLP 137
G L PRP P
Sbjct: 130 AG-LHRSREPRPQDGTP 145
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/137 (33%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPAGSLP 137
G L PRP P
Sbjct: 130 AG-LHRSREPRPQDGTP 145
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 43.5 bits (101), Expect = 2e-04
Identities = 61/239 (25%), Positives = 81/239 (33%), Gaps = 53/239 (22%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQP-------PGGKALSTRALQPGGALE----AG 57
AP +++L + A SPA +PA+ PL +P PGG +R + A A
Sbjct: 233 APRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSRQAETARATSVPGPAQ 292
Query: 58 TRGGREGHRRLRQPPTPSAP----PGSPLHEGFLLIA-LFPSSQNRHRSAGRGLAGR--- 109
E R QPP P+ P P P E A P+ GL G+
Sbjct: 293 AAAPPEVGRVSPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFG 352
Query: 110 -----------LQQVRP-----GAAGPRGRLPWV--------TGPRPAGSLPAAQFAAAS 145
L V+P G P P + GP+P GS P A
Sbjct: 353 LGASLLTQASTLMSVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGP--GPAP 410
Query: 146 GAARAGRRRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRIPAE 204
GA + G G +GP A TGG + KA K + +P E
Sbjct: 411 GA--------KTEPGARMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKE 461
Score = 39.3 bits (90), Expect = 0.003
Identities = 61/233 (26%), Positives = 77/233 (33%), Gaps = 48/233 (20%)
Query: 3 PGQHGVAPPPAGRERLQNKAWS-PAPAPARPPLNQPPGGKALSTRALQPGGALEA----- 56
PG+ P R + + S P+ APA P QP G S QP A A
Sbjct: 3662 PGRRAAKPHARDLGRHEARPHSQPSSAPAMPKKGQP--GYPSSAEYSQPSRASSAYHHAS 3719
Query: 57 ----GTRGGREGHRRLRQPPTPSAPPG--------------SPLHEGFLLIALFPSSQNR 98
G+R G L+ P A P SP A Q +
Sbjct: 3720 DSKKGSRQAHSGPAALQSKAEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQ 3779
Query: 99 HRSAGRGLA--------GRLQQVR--------PGAAGPRGRLP----WVTGPRPAGSLPA 138
+ G GL RLQQ P A+ P G+ TGP+PAG A
Sbjct: 3780 QQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRA 3839
Query: 139 AQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASG 189
Q + G A+A + R +A G A +P G G G A G
Sbjct: 3840 EQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADG 3892
Score = 29.6 bits (65), Expect = 2.6
Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 2 GPGQHGVAPP--PAGRERL------QNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGA 53
GPG PP PAG +L ++ A P P P P P G ++R L P
Sbjct: 28 GPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGP--GPGPGPGSTSRRLDPKEP 85
Query: 54 LEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQV 113
L G++R P A +P HE P AG+ G + +
Sbjct: 86 L---------GNQRAASPTPKQASATTPGHES-------PRETRAQGPAGQEADGPRRTL 129
Query: 114 RPGAAGPR-GRLPWVTGPRPAGSLPAAQFA 142
+ + R GR P V+ R GS P + ++
Sbjct: 130 QVDSRTQRSGRSPSVSPDR--GSTPTSPYS 157
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.7 bits (99), Expect = 3e-04
Identities = 63/223 (28%), Positives = 75/223 (33%), Gaps = 35/223 (15%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA-----PARPPLNQPPGGKALSTRALQPGGALEAG 57
PG +G P P G K P PA P P ++ P G PG G
Sbjct: 884 PGSNG-NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Query: 58 TRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RG 105
G G G R L PP P GSP +G + P + G G
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 106 LAGRL----QQVRPGAAGPRGR--LPWVTGPRPAGSLPAAQFA--------AASGAARAG 151
LAG + PG+ G GR P G R P A A A ++G
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Query: 152 RRRERACAGRSA--GDAAGPEAPQPTGGRGCSRGSATASGVGG 192
R E AG + G A AP P G RG +G G G
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRG-DKGETGERGAAG 1104
Score = 42.4 bits (98), Expect = 4e-04
Identities = 59/204 (28%), Positives = 71/204 (34%), Gaps = 37/204 (18%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQP-----PGGKA---LSTRALQPGGA 53
GPG G PP Q ++ P P P QP PG K + + GG
Sbjct: 544 GPGSDGKPGPPGS----QGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 54 LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ 111
G +G G+ G + PP P+ P G G P Q GL G
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGP------PGPQ--------GLQGL-- 643
Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARA-GRRRERACAGRSAGDAAGPE 170
PG GP G P P G A G A A G R AG + G G
Sbjct: 644 ---PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAG-APGLRGGAG 699
Query: 171 APQPTGGRGCS--RGSATASGVGG 192
P P GG+G + G A+G G
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGTPG 723
Score = 41.6 bits (96), Expect = 7e-04
Identities = 63/205 (30%), Positives = 69/205 (33%), Gaps = 35/205 (17%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAP--APARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
PG G A PP G E + A P P A P L PG + G E G G
Sbjct: 692 PGLRGGAGPP-GPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750
Query: 61 --GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA 118
G G R P P PPG P+ Q + G G G PG A
Sbjct: 751 ADGVPGKDGPRGPTGPIGPPG-------------PAGQPGDKGEG-GAPGL-----PGIA 791
Query: 119 GPRGRLP--WVTGPRPAGSLPAA--QFAAASGAARAGRRRERA------CAGRSAGDA-A 167
GPRG TGP P A Q G G E+ AG G A
Sbjct: 792 GPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPA 851
Query: 168 GPEAPQPTGGRGCSRGSATASGVGG 192
GP PQ G S G A+G G
Sbjct: 852 GPPGPQGVKGERGSPGGPGAAGFPG 876
Score = 41.2 bits (95), Expect = 9e-04
Identities = 42/148 (28%), Positives = 51/148 (34%), Gaps = 25/148 (16%)
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
GG G+ PP P PPG+ H G P S G PG AG
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPG------SPGSPGYQGPPG----------EPGQAG 210
Query: 120 PRGRLPWVTGPRPAGSLPAAQFAAASG-AARAGRRRERACAGRSA--GDAAGPEAPQPTG 176
P G P P G++ + A G + R GR ER G G A P P G
Sbjct: 211 PSG------PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKG 264
Query: 177 GRGCSRGSATASGVGGKAIKKAQRIPAE 204
RG + G +K +P E
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGE 292
Score = 41.2 bits (95), Expect = 9e-04
Identities = 62/202 (30%), Positives = 68/202 (33%), Gaps = 37/202 (18%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSPAPA-PARPPLNQPPGGKALSTRALQPGGALEAGTR 59
PG G + P G Q P A P+ PP PPG S A + G E+G R
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP--GPPGAIGPSGPAGKDG---ESG-R 235
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RGLAGRLQQ 112
GR G R L PP P G P G F G GL G +
Sbjct: 236 PGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPG--EN 293
Query: 113 VRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAP 172
PG GPRG G R LP A A + AR G P P
Sbjct: 294 GAPGPMGPRG----APGERGRPGLPGAAGARGNDGAR--------------GSDGQPGPP 335
Query: 173 QPTGGRGCSRGSATASGVGGKA 194
P G G GS A G G A
Sbjct: 336 GPPGTAGFP-GSPGAKGEVGPA 356
Score = 40.8 bits (94), Expect = 0.001
Identities = 62/205 (30%), Positives = 69/205 (33%), Gaps = 27/205 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG +G AP G Q A + P P P +N PGGK A PG G RG
Sbjct: 359 PGSNG-APGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPP 416
Query: 61 ------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFP------SSQNRHRSAGRGLAG 108
G G R P + G P G A P + S G A
Sbjct: 417 GPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476
Query: 109 RLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAG 168
L PGAAG RG P GP +P + A A G R AG D
Sbjct: 477 GL----PGAAGERG-APGFRGPAGPNGIPGEKGPAGERGA-PGPAGPRGAAGEPGRDG-- 528
Query: 169 PEAPQPTGGRGCSRGSATASGVGGK 193
P G RG GS G GK
Sbjct: 529 --VPGGPGMRGMP-GSPGGPGSDGK 550
Score = 39.3 bits (90), Expect = 0.003
Identities = 64/217 (29%), Positives = 75/217 (34%), Gaps = 29/217 (13%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
GPG P G + LQ + P P PG K + PGG +AG G
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE 682
Query: 61 -------GREGHRRLRQPPTP------SAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGL 106
G G R PP P + PPG P G + P + S G +G
Sbjct: 683 RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGD 742
Query: 107 AGRL----QQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASG----AARAGRRRERAC 158
G PG GPRG + P PAG A G A G ER
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 159 AGRSAGDAAGPEAPQPT---GGRGCSRGSATASGVGG 192
G G A P AP GG+G RG+ G GG
Sbjct: 803 TG-PPGPAGFPGAPGQNGEPGGKG-ERGAPGEKGEGG 837
Score = 39.3 bits (90), Expect = 0.003
Identities = 53/205 (25%), Positives = 65/205 (31%), Gaps = 17/205 (8%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ----PPGGKALSTRALQPGGALEAGT 58
PGQ+G R K P A PP PPG + + PGG AG
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF 874
Query: 59 RGGR-----EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRL-QQ 112
G R G PP PS PG G P S S +G AG+ ++
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG--VSGPKGDAGQPGEK 932
Query: 113 VRPGAAGPRGR-----LPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAA 167
PGA GP G + +TG R P S + +
Sbjct: 933 GSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGER 992
Query: 168 GPEAPQPTGGRGCSRGSATASGVGG 192
GP PQ G + G G G
Sbjct: 993 GPPGPQGLPGLAGTAGEPGRDGNPG 1017
Score = 38.1 bits (87), Expect = 0.007
Identities = 61/236 (25%), Positives = 76/236 (32%), Gaps = 52/236 (22%)
Query: 3 PGQHGVA-----PPPAGRERLQNKAWSPAP-----APARPPLNQPPGGKALSTRALQPGG 52
PG +G++ P P G L A P + P + PGGK PG
Sbjct: 983 PGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042
Query: 53 ALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG- 103
G G G+ G R P P+ PG G P Q G
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA------PGPQGPRGDKGE 1096
Query: 104 ---RGLAGRL-------QQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASG------- 146
RG AG PG+ GP G+ + P PAG + G
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGH 1156
Query: 147 ------AARAGRRRERACAGRSAGDAAGPEAPQPTGGRG--CSR-GSATASGVGGK 193
G R ER G S G P P P G G C G+A +G+GG+
Sbjct: 1157 PGPIGPPGPRGNRGERGSEG-SPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGE 1211
Score = 35.8 bits (81), Expect = 0.036
Identities = 55/223 (24%), Positives = 71/223 (31%), Gaps = 41/223 (18%)
Query: 3 PGQHGVAPPPA--------------------GRERLQNKAWSPAPAPARPPLNQP----- 37
PG+ G P G + + +P PA R +P
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGV 529
Query: 38 PGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSS 95
PGG + PGG G G G +G PP PS P G P G FP
Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG------FPGP 583
Query: 96 QNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPR-PAGSLPAAQFAAASGAARAGRRR 154
+ + G+ R PG GP G+ TGP+ P G +G +
Sbjct: 584 KGNDGAPGKN-GERGGPGGPGPQGPPGK-NGETGPQGPPGPTGPGGDKGDTGPPGPQGLQ 641
Query: 155 ERACAGRSAGDAAGPEAPQPTGGRGC-----SRGSATASGVGG 192
G G+ P P P G G +G A A G G
Sbjct: 642 GLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 42.4 bits (98), Expect = 4e-04
Identities = 43/151 (28%), Positives = 50/151 (33%), Gaps = 32/151 (21%)
Query: 7 GVAPPPAGRERLQNKAWSPAPAPARPP-----LNQPPGGKALSTRALQPGGALEAGTRGG 61
G PPP +++ Q + SP P A P L PP A S+ A PGG G
Sbjct: 3 GQPPPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGA 62
Query: 62 REGHRRLRQPPTP----SAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGA 117
L PP P +APP P A P A
Sbjct: 63 AAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP-----------------------A 99
Query: 118 AGPRGRLPWVTGPRPAGSLPAAQFAAASGAA 148
+GP GP PAG P A S AA
Sbjct: 100 SGPPAPPGLAAGPGPAGGAPTPALVAGSSAA 130
Score = 29.3 bits (64), Expect = 3.3
Identities = 45/179 (25%), Positives = 57/179 (31%), Gaps = 29/179 (16%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRA------LQPGGALE 55
G G G A L + P PA A PP PP S A PG A
Sbjct: 52 GGGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAG 111
Query: 56 AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP 115
G GG PTP+ GS A FP + + L RL+++ P
Sbjct: 112 PGPAGG---------APTPALVAGSS------AAAPFPHGDSALNEQEKELQRRLKRLYP 156
Query: 116 GAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQP 174
LP P+ S G ++ R G++ DAA A P
Sbjct: 157 AVDEQETPLPRSWSPKDKFSY--------IGLSQNNLRVHYKGHGKTPKDAASVRATHP 207
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 42.4 bits (98), Expect = 4e-04
Identities = 60/199 (30%), Positives = 68/199 (34%), Gaps = 63/199 (31%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSP---APAPARPPLNQPPGGKALSTRALQ-PGGALEAGT 58
PG VAP P G + SP AP P P +PP TRA + G A AG
Sbjct: 16 PGCPEVAPQPEGTDAPGPAVCSPTARAPPPILPAPQRPP------TRAREWEGAAWAAGA 69
Query: 59 RG------GREGHRRLRQPP------TPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGL 106
G G RRL + P +P PG+P RG
Sbjct: 70 TGVGAALLALPGSRRLGRVPLTFREASPGPAPGAP--------------------RARGS 109
Query: 107 AGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA---CAGRSA 163
GR GPR R P AG PAA AARA R+R+ C RS
Sbjct: 110 CGR-------EPGPRRR----RAPSSAGKRPAA-------AARAAPPRQRSLARCLPRSV 151
Query: 164 GDAAGPEAPQPTGGRGCSR 182
G P R C R
Sbjct: 152 GSCVRPSVGPSLPRRHCRR 170
Score = 29.6 bits (65), Expect = 2.6
Identities = 52/169 (30%), Positives = 64/169 (37%), Gaps = 26/169 (15%)
Query: 24 SPAPAPARPPLNQPPGGKALST-RALQPGGALEAGTRGGREGHRR----------LRQPP 72
SP P R + P G L R+L GG + G R R G R L PP
Sbjct: 212 SPFPRRCRRRAERSPAGHGLPLPRSLSRGGEV-VGARRRRGGEERRVRGRRQGCALGSPP 270
Query: 73 TPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRP 132
P A P +P G A Q R R G G++ R GA G G VT PR
Sbjct: 271 IP-AGPAAPGRAGERRAA----RQWRKRGGGPGVS-----PREGAQG-EGVRGGVT-PRA 318
Query: 133 AGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRGCS 181
GS + + A+ A R A R + +A EA + GG S
Sbjct: 319 RGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSA--EAEEVPGGHTAS 365
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 42.0 bits (97), Expect = 5e-04
Identities = 51/163 (31%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 21 KAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGS 80
K+ P P P QP G A R +PG A E +R R R R PP P PG+
Sbjct: 195 KSQPPLPQETAAPAPQP-GPTAPPARVREPGRA-EGASREPRLRSRAARPPPAPG--PGA 250
Query: 81 PLHEGFLLIALFPSSQNRHRSAGR---GLAGRLQQVRPGA-AGPRGRLPWVTGPRPAGSL 136
S +R R+AGR G G + P A G GR P G S
Sbjct: 251 ------------LSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
Query: 137 PAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPTGGRG 179
SG A G RR D AG P T G G
Sbjct: 299 ARQDAWGLSGCATVGLRRGDC-------DRAGSSQPPATSGNG 334
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 5e-04
Identities = 42/171 (24%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
APP G+ R A P PP +PP + +A P + G
Sbjct: 523 APPTQGQGRQSRPV---AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP----- 574
Query: 69 RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG----RGLAGRLQQVRPGAAGPRGRL 124
P APPG +G P+ R S R QQ RP GP GR
Sbjct: 575 --PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRP 632
Query: 125 PWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQPT 175
+P+ +P AAA G + ++ +A + P P+P+
Sbjct: 633 KPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLT--NAFNLPEPAPPRPS 681
Score = 37.7 bits (86), Expect = 0.009
Identities = 52/201 (25%), Positives = 68/201 (33%), Gaps = 31/201 (15%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
G G HG P SP P +Q P G R GG + G
Sbjct: 429 GRGSHGQTP-------------SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475
Query: 62 REGHRRLRQPPTP--------SAPPGSPLHEGF---LLIALFPSSQNRHRSAGRGLAGRL 110
R+G ++PP P GSPL + P+SQ + G+G R
Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP 535
Query: 111 QQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGP 169
PGA P R P P R AG A + + SG A +A G
Sbjct: 536 VAGGPGAP-PAARPPASPSPQRQAGPPQATRQTSVSGPA-----PPKASGAPPGGQQRQG 589
Query: 170 EAPQPTGGRGCSRGSATASGV 190
+P G G +R ++ A V
Sbjct: 590 PPQKPPGPAGPTRQASQAGPV 610
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 41.6 bits (96), Expect = 7e-04
Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 37/202 (18%)
Query: 3 PGQHGVAPPPAGRERLQNKAW----SPAPAPARP--PLNQPPGGKALSTRALQ-PGGALE 55
PGQH P + + P P P RP P P G+ L+ + +Q PG L
Sbjct: 351 PGQHQPILTPGHSQPIPTPGQPLPPQPIPTPGRPLTPQPIPTPGRPLTPQPIQMPGRPLR 410
Query: 56 AGT-----RGGREGHRRLRQP-----PTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-- 103
R G+ +LRQ P P PPG P G L L P R S
Sbjct: 411 LPPPLRLLRPGQPMSPQLRQTQGLPLPQPLLPPGQPKSAGRPLQPLPPGPDARSISDPPA 470
Query: 104 ----------RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRR 153
RGL RL PG A PR PAA A + G
Sbjct: 471 PRSRLPIRLLRGLLARL----PGGASPRAAA--AAACTTMKGWPAATMTPAETSPTMG-- 522
Query: 154 RERACAGRSAGDAAGPEAPQPT 175
A AG S G+ A E+P T
Sbjct: 523 PPDASAGFSIGEIAAAESPSAT 544
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.6 bits (96), Expect = 7e-04
Identities = 64/235 (27%), Positives = 73/235 (31%), Gaps = 50/235 (21%)
Query: 10 PPPAGRER------------LQNKAWSPA-PAPARPPLNQPPGGKALSTRALQPGGALEA 56
PPPAGR R + PA PAP L PP G A S + A+ A
Sbjct: 89 PPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148
Query: 57 GTRGGREGHRRLRQP----------------PTPSAPPGSPLHEGFL-LIALFPSSQNRH 99
G G + P P P PG P G + + N H
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSH 208
Query: 100 RSA-------GRGLAGRLQQVRPGAAGPRGRLPWVTG----PRPAG-SLPAAQFAAASGA 147
+A G A L +P A G + P G P PA S PAA AA A
Sbjct: 209 HAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268
Query: 148 ARAGRRRERACAGRSAGDAAGPEAPQPT--------GGRGCSRGSATASGVGGKA 194
A A R G AGP P G A A GG A
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA 323
Score = 35.8 bits (81), Expect = 0.036
Identities = 62/191 (32%), Positives = 69/191 (36%), Gaps = 38/191 (19%)
Query: 7 GVAPPPAGRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREG 64
G A PPA A SP APAPA P PP A +T A PG AG
Sbjct: 245 GAAAPPAPA------APSPPAAPAPAAPAAAPPPPPPAPATLARPPGH--PAG------- 289
Query: 65 HRRLRQPPT--PSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
PPT P+ PP + G + A G AG Q PGAA
Sbjct: 290 ------PPTAAPAVPPPAAAQNGG-----SAGAAPAPAPAAGGPAGVSGQPGPGAAA-AA 337
Query: 123 RLPWVTGPRP----AGSLPAAQFAAASGAA--RAGRRRERACAGRSAGDAAGPEAPQPTG 176
P V P + PAAQ AASG A A G AA P P P
Sbjct: 338 PAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP-PPAPGT 396
Query: 177 GRGCSRGSATA 187
G +G+A A
Sbjct: 397 PTGLPKGAAGA 407
Score = 33.1 bits (74), Expect = 0.23
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 106 LAGRLQQVRPGAAGPRGRLPWVTGPRPAGSL---PAAQFAAASGAARAGRRRERACAGRS 162
LA R +VR AAG G V PAG+ PAA A GAA E AGR+
Sbjct: 43 LAPRTPEVRAAAAGALGN--HVVSGSPAGAAGAGPAAPAEGAPGAA-----PEPPPAGRA 95
Query: 163 AGDAAGPEAPQPTGGR 178
GP+ P P R
Sbjct: 96 RPGGGGPQRPGPPSPR 111
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 41.6 bits (96), Expect = 7e-04
Identities = 49/189 (25%), Positives = 72/189 (38%), Gaps = 27/189 (14%)
Query: 15 RERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTP 74
RER + ++ SPAPAPA PP K + G A EA + PP P
Sbjct: 491 RERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAAS----SSSGTQPAPPAP 546
Query: 75 SAPPGSPLHEGFLL---IALFPSSQNRHRSAGRGLAGR-----LQQVRPGAAGPRGRLPW 126
++P S H S++ R RS R + R + R G+ R R
Sbjct: 547 ASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKR 606
Query: 127 VTGPRPAGSLPAAQFAAAS------------GAARAGRRRERACAGRSAGDA---AGPEA 171
R A PA +++S G ++ ++R R+ + +GD A A
Sbjct: 607 RRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPA 666
Query: 172 PQPTGGRGC 180
P P+G C
Sbjct: 667 PPPSGSTSC 675
Score = 30.4 bits (67), Expect = 1.5
Identities = 48/169 (28%), Positives = 60/169 (35%), Gaps = 28/169 (16%)
Query: 27 PAPARPP---------LNQPPGGKALSTRALQPGGALEAGT--RGGREGHRRLRQPPTPS 75
P P PP + QP L+ +PGG T + L QPP P
Sbjct: 380 PPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPR 439
Query: 76 APPGS---PLH-----EGFLLIALFPSSQNRHRSAGR--GLAGRLQQVRPGAAGPRGRLP 125
AP G LH EG L + L + + R GL R + + R R P
Sbjct: 440 APEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSP 499
Query: 126 WVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQP 174
P PA A AAA R RRER +G + A+ QP
Sbjct: 500 ---SPAPA----PAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQP 541
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPP 38
+G G G APPPA + + SP+ + PP PP
Sbjct: 177 LGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPP 214
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 41.6 bits (96), Expect = 7e-04
Identities = 58/206 (28%), Positives = 78/206 (37%), Gaps = 27/206 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRAL--QPGGALEAGTRG 60
PGQHG+ P G + + +P P A+ + ++T+ QPG G +G
Sbjct: 520 PGQHGLPGFP-GLKGVPGNIGAPGPKGAKGD------SRTITTKGERGQPGVPGVPGMKG 572
Query: 61 --------GREGHRRLRQPPTPS--APPGSPLHEGFLLIALFPSSQNRHRSAGRGLAG-R 109
G +G L PP PPG P + G P G GL G +
Sbjct: 573 DDGSPGRDGLDGFPGLPGPPGDGIKGPPGDPGYPGIPGTKGTPGEMG---PPGLGLPGLK 629
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRER---ACAGRSAGDA 166
Q+ PG AG G ++ P PAG+ A G R+E C G G
Sbjct: 630 GQRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLP 689
Query: 167 AGPEAPQPTGGRGCSRGSATASGVGG 192
P P PTG +G RG +G G
Sbjct: 690 GLPGPPGPTGAKGL-RGIPGFAGADG 714
Score = 37.0 bits (84), Expect = 0.016
Identities = 46/160 (28%), Positives = 59/160 (36%), Gaps = 46/160 (28%)
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
GG G R PP P PG P +GF LF + R+ GL G PGA G
Sbjct: 422 GGPPGPDGKRGPPGPPGLPGPPGPDGF----LFGLKGAKGRAGFPGLPG-----SPGARG 472
Query: 120 PRG------------------RLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGR 161
P+G LP + GP+ FA +G GR+ +R G+
Sbjct: 473 PKGWKGDAGECRCTEGDEAIKGLPGLPGPK--------GFAGING--EPGRKGDRGDPGQ 522
Query: 162 SA--------GDAAGPEAPQPTGGRGCSRGSATASGVGGK 193
G AP P G +G SR + T G G+
Sbjct: 523 HGLPGFPGLKGVPGNIGAPGPKGAKGDSR-TITTKGERGQ 561
Score = 35.8 bits (81), Expect = 0.036
Identities = 56/197 (28%), Positives = 67/197 (34%), Gaps = 30/197 (15%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALS---------TRALQPG 51
PG+ G PP G L+ + P A P P PPG RA+ G
Sbjct: 615 PGEMG--PPGLGLPGLKGQRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKRAV--G 670
Query: 52 G----ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GL 106
G A++ G GG +G L PP P+ G GF P + AGR G
Sbjct: 671 GDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGF 730
Query: 107 AGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDA 166
G PG GPRG V P P GS G ER G G
Sbjct: 731 PG-----PPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPP-----GERGLPGEVLGAQ 780
Query: 167 AGPEAPQPTGGRGCSRG 183
GP G+ +G
Sbjct: 781 PGPRGDAGVPGQPGLKG 797
Score = 32.3 bits (72), Expect = 0.40
Identities = 57/205 (27%), Positives = 70/205 (34%), Gaps = 37/205 (18%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAP-ARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
PG G P K W+ P RP + PG K P G E G G
Sbjct: 1307 PGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKG-------PRG--EQGFMGN 1357
Query: 61 -GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ--VRPGA 117
G G R P P PG P G + G+AG Q+ V+PG
Sbjct: 1358 TGPTGAVGDRGPKGPKGDPGFPGAPGTV--------------GAPGIAGIPQKIAVQPGT 1403
Query: 118 AGPRGR-----LPWVTGPRPAGSLPAAQFAAASG-AARAGRRRERACAG-RSAGDAAGPE 170
GP+GR P GP+ P F A G A GR A G R G +
Sbjct: 1404 VGPQGRRGPPGAPGEMGPQGPPGEPG--FRGAPGKAGPQGRGGVSAVPGFRGDEGPIGHQ 1461
Query: 171 APQPTGGRGCSRGSATASGVGGKAI 195
P G GS G+ G+++
Sbjct: 1462 GPIGQEGAPGRPGSPGLPGMPGRSV 1486
Score = 31.2 bits (69), Expect = 0.88
Identities = 53/200 (26%), Positives = 64/200 (32%), Gaps = 35/200 (17%)
Query: 32 PPLNQPPGGKALSTRALQPGGALEAGTRG--------GREGHRRLRQPPTPSAPPGSP-- 81
P L PPG + R PGG + G G G G R L P PGSP
Sbjct: 1154 PGLTGPPGSQGELGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGS 1213
Query: 82 -LHEGFLLIALFPSSQNRHRSAGR--------GLAGRL-QQVRPGAAGPRGR-----LPW 126
+H FP G G+ G+ Q PG GP G P
Sbjct: 1214 DIHGD----PGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPG 1269
Query: 127 VTGPRPAGSLPAAQFAAASGAARAGRRRE----RACAGRSAGDAAGPEAPQPTGGRGCS- 181
+T P P + A + R A S GD P AP G +G +
Sbjct: 1270 ITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAG 1329
Query: 182 -RGSATASGVGGKAIKKAQR 200
G GV G +K R
Sbjct: 1330 DSGPQGRPGVFGLPGEKGPR 1349
Score = 28.1 bits (61), Expect = 7.5
Identities = 44/182 (24%), Positives = 60/182 (32%), Gaps = 29/182 (15%)
Query: 32 PPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIAL 91
P PPG + PG A G G + + P PPGSP +GF +
Sbjct: 1219 PGFPGPPGERG------DPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGF--PGI 1270
Query: 92 FPSSQNRHRSAGRGLAG-------RLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAA 144
P S +G G R PG+A G P G+ +A
Sbjct: 1271 TPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGD 1330
Query: 145 SG----------AARAGRRRERACAGRSAGDAA----GPEAPQPTGGRGCSRGSATASGV 190
SG G R E+ G + A GP+ P+ G + G+ A G+
Sbjct: 1331 SGPQGRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGI 1390
Query: 191 GG 192
G
Sbjct: 1391 AG 1392
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,153,574
Number of Sequences: 37866
Number of extensions: 936554
Number of successful extensions: 9606
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 1100
Number of HSP's that attempted gapping in prelim test: 6896
Number of HSP's gapped (non-prelim): 3144
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.