Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GREB1 Sequence: fasta or formatted (1949aa) NCBI GI: 23397642
Description:

GREB1 protein isoform a

Referenced in:

Mammary Tissues

Other entries for this name:
alt prot [409aa] GREB1 protein isoform c
alt prot [457aa] GREB1 protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8        133           3
 C cysteine            2.6         50           2
 D aspartate           3.8         75           2
 E glutamate           6.3        122           6
 F phenylalanine       4.0         78           2
 G glycine             5.8        113           3
 H histidine           4.0         77           2
 I isoleucine          3.7         73           2
 K lysine              4.4         86           2
 L leucine            11.5        224           3
 M methionine          1.7         33           1
 N asparagine          3.6         71           2
 P proline             6.5        127           2
 Q glutamine           4.9         95           2
 R arginine            4.7         92           2
 S serine             10.8        210           5
 T threonine           4.1         79           2
 V valine              6.5        127           3
 W tryptophan          1.0         20           1
 Y tyrosine            3.3         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GREB1 protein isoform a 
KIAA1772              0.467   KIAA1772 
GREB1                 0.229   GREB1 protein isoform b 
GREB1                 0.197   GREB1 protein isoform c 
SRRM2                 0.007   splicing coactivator subunit SRm300 
TNRC18                0.006   trinucleotide repeat containing 18 
MEX3B                 0.006   mex-3 homolog B 
ABL1                  0.005   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.005   c-abl oncogene 1, receptor tyrosine kinase isoform b...
RFC1                  0.005   replication factor C large subunit 
LOC100170229          0.005   hypothetical protein LOC100170229 
DSPP                  0.005   dentin sialophosphoprotein preproprotein 
ARL6IP4               0.005   SRp25 nuclear protein isoform 4 
ARL6IP4               0.005   SRp25 nuclear protein isoform 2 
WBP11                 0.005   WW domain binding protein 11 
LOC100288540          0.005   PREDICTED: hypothetical protein XP_002342775 
ZC3H18                0.005   zinc finger CCCH-type containing 18 
SYN1                  0.005   synapsin I isoform Ia 
SYN1                  0.005   synapsin I isoform Ib 
SETD1A                0.004   SET domain containing 1A 
HDGF2                 0.004   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.004   hepatoma-derived growth factor-related protein 2 iso...
CTTNBP2NL             0.004   CTTNBP2 N-terminal like 
HRNR                  0.004   hornerin 
FNDC1                 0.004   fibronectin type III domain containing 1 
BTBD12                0.004   BTB (POZ) domain containing 12 
SRRM1                 0.004   serine/arginine repetitive matrix 1 
CUX1                  0.004   cut-like homeobox 1 isoform a 
EAF1                  0.004   ELL associated factor 1 
PRB3                  0.004   proline-rich protein BstNI subfamily 3 precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press