Guide to the Human Genome
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Name: BTBD12 Sequence: fasta or formatted (1834aa) NCBI GI: 63252863
Description:

BTB (POZ) domain containing 12

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        141           2
 C cysteine            1.7         32           2
 D aspartate           4.5         83           2
 E glutamate           9.3        171           4
 F phenylalanine       2.2         40           2
 G glycine             6.9        126           2
 H histidine           2.5         46           2
 I isoleucine          2.0         36           2
 K lysine              4.9         90           3
 L leucine             9.1        166           3
 M methionine          1.4         26           2
 N asparagine          2.1         39           2
 P proline             9.7        178           4
 Q glutamine           6.3        116           2
 R arginine            6.8        125           3
 S serine             11.3        207           4
 T threonine           5.0         92           2
 V valine              4.7         87           2
 W tryptophan          0.9         17           1
 Y tyrosine            0.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BTB (POZ) domain containing 12 
MDC1                  0.008   mediator of DNA-damage checkpoint 1 
BAT2                  0.008   HLA-B associated transcript-2 
RHOBTB3               0.007   rho-related BTB domain containing 3 
TACC2                 0.007   transforming, acidic coiled-coil containing protein...
TACC2                 0.007   transforming, acidic coiled-coil containing protein ...
TACC2                 0.007   transforming, acidic coiled-coil containing protein ...
TACC2                 0.007   transforming, acidic coiled-coil containing protein ...
NEFH                  0.007   neurofilament, heavy polypeptide 200kDa 
RAI1                  0.007   retinoic acid induced 1 
SYN1                  0.006   synapsin I isoform Ia 
MUC17                 0.006   mucin 17 
BRD2                  0.006   bromodomain containing 2 
BRD2                  0.006   bromodomain containing 2 
GAB1                  0.006   GRB2-associated binding protein 1 isoform a 
RCBTB2                0.006   regulator of chromosome condensation and BTB domain c...
LOC149478             0.005   hypothetical protein LOC149478 
PRG4                  0.005   proteoglycan 4 isoform D 
PRG4                  0.005   proteoglycan 4 isoform C 
PRG4                  0.005   proteoglycan 4 isoform B 
PRG4                  0.005   proteoglycan 4 isoform A 
MAP1A                 0.005   microtubule-associated protein 1A 
SYN1                  0.005   synapsin I isoform Ib 
DOCK4                 0.005   dedicator of cytokinesis 4 
SOX11                 0.005   SRY-box 11 
LOC100288562          0.005   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          0.005   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          0.005   PREDICTED: hypothetical protein XP_002342901 
LOC100288470          0.005   PREDICTED: hypothetical protein XP_002342900 
PELP1                 0.005   proline, glutamic acid and leucine rich protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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