LOC100288540 17542

Name: LOC100288540	Sequence: fasta or formatted (834aa)		NCBI GI: 239743232
Description: PREDICTED: hypothetical protein XP_002342775		Referenced in: Nucleus and Nucleolus
Composition: Amino acid Percentage Count Longest homopolymer A alanine 13.7 114 3 C cysteine 0.2 2 1 D aspartate 1.2 10 1 E glutamate 2.4 20 3 F phenylalanine 6.4 53 2 G glycine 8.4 70 2 H histidine 0.6 5 2 I isoleucine 1.7 14 1 K lysine 3.8 32 2 L leucine 5.8 48 2 M methionine 1.0 8 1 N asparagine 2.2 18 1 P proline 14.1 118 4 Q glutamine 4.3 36 1 R arginine 2.0 17 2 S serine 16.4 137 4 T threonine 12.7 106 4 V valine 2.6 22 1 W tryptophan 0.2 2 1 Y tyrosine 0.2 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: hypothetical protein XP_002342775 POM121C 0.971 POM121 membrane glycoprotein (rat)-like POM121 0.967 nuclear pore membrane protein 121 POM121L2 0.286 POM121 membrane glycoprotein-like 2 LOC100292653 0.220 PREDICTED: similar to hCG1998564 NUP214 0.080 nucleoporin 214kDa C15orf2 0.080 hypothetical protein LOC23742 MUC2 0.069 mucin 2 precursor FLJ22184 0.062 PREDICTED: hypothetical protein FLJ22184 NACA 0.061 nascent polypeptide-associated complex alpha subuni... MUC5B 0.059 mucin 5, subtype B, tracheobronchial MUC17 0.054 mucin 17 LOC729915 0.054 PREDICTED: similar to Putative POM121-like protein ... MUC6 0.053 mucin 6, gastric MUC4 0.052 mucin 4 isoform a SRCAP 0.052 Snf2-related CBP activator protein LOC100294420 0.051 PREDICTED: similar to mucin 2 LOC100133756 0.051 PREDICTED: hypothetical protein, partial TRO 0.050 trophinin isoform 5 PRG4 0.049 proteoglycan 4 isoform B PRG4 0.049 proteoglycan 4 isoform A LOC100133280 0.049 PREDICTED: similar to Putative POM121-like protein ... MUC5AC 0.048 mucin 5AC MUC12 0.046 PREDICTED: mucin 12 MUC12 0.045 PREDICTED: mucin 12 SRRM2 0.045 splicing coactivator subunit SRm300 FLJ22184 0.044 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.043 PREDICTED: hypothetical protein LOC80164 PRG4 0.043 proteoglycan 4 isoform D PRG4 0.043 proteoglycan 4 isoform C Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.