LMNA 24331

Name: LMNA	Sequence: fasta or formatted (634aa)		NCBI GI: 27436948
Description: lamin A/C isoform 3		Referenced in: Cytoskeleton Nucleus and Nucleolus Prenylation and Related Modifications
Other entries for this name: alt prot [664aa] lamin A/C isoform 1 precursor alt prot [572aa] lamin A/C isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.1 58 2 C cysteine 0.8 5 1 D aspartate 4.7 30 2 E glutamate 10.6 67 3 F phenylalanine 1.3 8 1 G glycine 6.5 41 3 H histidine 1.4 9 1 I isoleucine 2.5 16 1 K lysine 6.2 39 2 L leucine 11.0 70 2 M methionine 1.4 9 1 N asparagine 3.3 21 1 P proline 2.4 15 2 Q glutamine 6.3 40 3 R arginine 9.8 62 2 S serine 10.7 68 3 T threonine 5.5 35 1 V valine 4.1 26 2 W tryptophan 0.6 4 1 Y tyrosine 1.7 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lamin A/C isoform 3 LMNA 0.987 lamin A/C isoform 1 precursor LMNA 0.837 lamin A/C isoform 2 LMNB1 0.474 lamin B1 LMNB2 0.468 lamin B2 DES 0.122 desmin PRPH 0.118 peripherin VIM 0.116 vimentin NEFL 0.109 neurofilament, light polypeptide 68kDa GFAP 0.105 glial fibrillary acidic protein isoform 1 NEFM 0.104 neurofilament, medium polypeptide 150kDa isoform 1 ... INA 0.102 internexin neuronal intermediate filament protein, a... GFAP 0.102 glial fibrillary acidic protein isoform 2 KRT8 0.099 keratin 8 KRT18 0.099 keratin 18 KRT18 0.099 keratin 18 KRT75 0.095 keratin 75 NEFH 0.092 neurofilament, heavy polypeptide 200kDa KRT5 0.091 keratin 5 KRT6C 0.089 keratin 6C KRT3 0.088 keratin 3 KRT6A 0.087 keratin 6A KRT6B 0.086 keratin 6B KRT4 0.086 keratin 4 KRT16 0.086 keratin 16 KRT78 0.085 keratin 5b KRT1 0.084 keratin 1 KRT7 0.084 keratin 7 KRT14 0.083 keratin 14 KRT80 0.081 keratin 80 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.