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Search of human proteins with 21389395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389395 hypothetical protein LOC123970 [Homo sapiens]
(265 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389395 hypothetical protein LOC123970 [Homo sapiens] 534 e-152
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 36 0.030
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 35 0.068
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 35 0.068
gi|154090979 hypothetical protein LOC57481 [Homo sapiens] 33 0.34
gi|157743265 caspase recruitment domain family, member 11 [Homo ... 32 0.44
gi|239757611 PREDICTED: hypothetical protein [Homo sapiens] 32 0.57
gi|7661696 hypothetical protein LOC26017 [Homo sapiens] 32 0.75
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 32 0.75
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 32 0.75
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 32 0.75
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 32 0.75
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 32 0.75
gi|148746220 spermatogenesis associated, serine-rich 2 [Homo sap... 31 0.98
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 31 0.98
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 31 0.98
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 31 0.98
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 31 0.98
gi|92110019 hypothetical protein LOC55672 [Homo sapiens] 31 0.98
gi|26190614 rhotekin 2 [Homo sapiens] 31 0.98
gi|236459851 ubinuclein 2 [Homo sapiens] 31 1.3
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 31 1.3
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 31 1.3
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 30 1.7
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 30 1.7
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 30 1.7
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 30 1.7
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 30 1.7
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 30 1.7
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 30 1.7
>gi|21389395 hypothetical protein LOC123970 [Homo sapiens]
Length = 265
Score = 534 bits (1376), Expect = e-152
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVL 60
MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVL
Sbjct: 1 MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVL 60
Query: 61 KRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSMVP 120
KRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSMVP
Sbjct: 61 KRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSMVP 120
Query: 121 GSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNK 180
GSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNK
Sbjct: 121 GSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNK 180
Query: 181 MPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVLSCRYLRLSKENIRTLLKLCKDAGMNV 240
MPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVLSCRYLRLSKENIRTLLKLCKDAGMNV
Sbjct: 181 MPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVLSCRYLRLSKENIRTLLKLCKDAGMNV 240
Query: 241 DIHPHMVEEDIDAKKVFTGIPSMAL 265
DIHPHMVEEDIDAKKVFTGIPSMAL
Sbjct: 241 DIHPHMVEEDIDAKKVFTGIPSMAL 265
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 36.2 bits (82), Expect = 0.030
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 3 EQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVLKR 62
E++ + K+ +RK + + E+R+ ER++ KK++ K++ K +R
Sbjct: 155 EKERERKERKKRERKQVGEKEEERKEK---------ERKERKKRERNRKERKKERERKER 205
Query: 63 NKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
++K+E+K K R T ++ GKR RK+
Sbjct: 206 RERKKERKKKEERKKERQKDRQTNWREKERGKRERKE 242
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/100 (19%), Positives = 47/100 (47%)
Query: 15 KRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGL 74
+RK + +R+ + E ER++ ++KQ EK++ + K KK+E + +
Sbjct: 138 ERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERK 197
Query: 75 MTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGK 114
RR+ + ++ +R ++ ++ + +++GK
Sbjct: 198 KERERKERRERKKERKKKEERKKERQKDRQTNWREKERGK 237
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/115 (18%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 40 RRQGKKKQAPEKQKP-KVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
R++GKK++ E++K + KR ++KE K+ +G +G +++ ++ ++ K
Sbjct: 48 RKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENK 107
Query: 99 DAASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQ 153
+ E+K + G K+G ++ + + + + +R R +
Sbjct: 108 EGEEKEKRKKKEKKER------GRTSKEGKERERKEERKREERKERERKKEEREK 156
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 35.0 bits (79), Expect = 0.068
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 83 RDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSMVPGSYIKDGPKKS---DTDIKDA- 138
R E S + + + F++ A + + + +E+K KHL + S +D +KS +T + D+
Sbjct: 699 RPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIETYVMDSR 758
Query: 139 VDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKST 198
+D VL +++ G N +R+ + K+ +M E+ K+
Sbjct: 759 IDVSVAAGHTDRSGLGSVLRDLVKPGDEN------LREMNKKLQNMLEEQLTKN------ 806
Query: 199 EPKMETMRMLKPEEVLSCRYLRLSKE 224
M + K EVLS +RLSKE
Sbjct: 807 ------MHLHKDMEVLSQEIVRLSKE 826
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 35.0 bits (79), Expect = 0.068
Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKP-----K 55
++++ L + K++ + E+RR ++ + E R+ K++ K+K K
Sbjct: 193 IAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKK 252
Query: 56 VVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKH 115
+ + +R+K K+E K K L G+ ++ + ++A K+ K+ +L G+
Sbjct: 253 IDRIPERDKLKDEPKIKLLKKPEKGDEKELDKREKA--KKLDKE-----NLSDERASGQS 305
Query: 116 LSMVPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIR 175
++ PK+SD+++KD E +RP + D +E + + +R
Sbjct: 306 CTL---------PKRSDSELKD----EKPKRPEDESGR----DYREREREYERDQERILR 348
Query: 176 DWSNKMPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVL 214
+ R+ K EK K + M K ++ L
Sbjct: 349 ERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKDTL 387
>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
Length = 1709
Score = 32.7 bits (73), Expect = 0.34
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 61 KRNKKKE--EKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSM 118
K+N K E +KK +R A G+R+R+ AS L G E KG+ L
Sbjct: 500 KQNNKTEMYDKKTTDQAPNTDASRSQGYPMSAAYGRRWRRKGASVSGLSGCEFKGRSLKQ 559
Query: 119 VPGSY-IKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRAT 172
Y + D S T+ T R PF S+ D M Q T + T
Sbjct: 560 SSEGYGLGDRAGSSPTN--------KTARNVPFSHLSLEKDNMEQPTTSQPETTT 606
>gi|157743265 caspase recruitment domain family, member 11 [Homo
sapiens]
Length = 1154
Score = 32.3 bits (72), Expect = 0.44
Identities = 43/204 (21%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 38 LERRQGKKKQAPEKQKPKVVTVLKRNKKKE--EKKGKGLMTARGGNRRDTETSQQA---L 92
LER Q K + + +PK VL+ ++ E + K + L + +R S +A +
Sbjct: 245 LERNQSLKLKNDIENRPKKEQVLELERENEMLKTKNQELQSIIQAGKRSLPDSDKAILDI 304
Query: 93 GKRFRKDAASYRS-----LYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQRP 147
+ RK+A R +Y ++++ + + Y+++ K D ++K + + +
Sbjct: 305 LEHDRKEALEDRQELVNRIYNLQEEARQAEELRDKYLEE---KEDLELKCSTLGKDCEM- 360
Query: 148 NPFRRQSIVLDPMLQEGTFNSQRATFIRDWSNKMPDMA------YERKLKSLMEKSTEPK 201
R +++L L+E +A RD + Y ++++ L EK+ E +
Sbjct: 361 YKHRMNTVML--QLEEVERERDQAFHSRDEAQTQYSQCLIEKDKYRKQIRELEEKNDEMR 418
Query: 202 METMRMLKPEEVLSCRYLRLSKEN 225
+E +R L + RLSK++
Sbjct: 419 IEMVRREACIVNLESKLRRLSKDS 442
>gi|239757611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 32.0 bits (71), Expect = 0.57
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 44 KKKQAPEKQKPKVVTVLKRNKKKEEKKGKGL---MTARGGNRRDTETSQQALGKRFRKDA 100
+KK+ +K K K+ + NKK EE+K GL AR + E Q RK
Sbjct: 53 RKKKKKDKDKAKLPESMGMNKKNEEEKQHGLDKWTPARAAFEKMQEKRQWKGSS--RKHP 110
Query: 101 ASYRSLYGVEQKGKHLSMVPGSYI 124
AS VE +HL + YI
Sbjct: 111 ASKTHKQRVEDFNRHLDTLTEHYI 134
>gi|7661696 hypothetical protein LOC26017 [Homo sapiens]
Length = 112
Score = 31.6 bits (70), Expect = 0.75
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 44 KKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASY 103
+KK+ +K K K++ + +KK EE+K +GL + ++ +R K A+
Sbjct: 25 RKKKKKDKDKAKLLEAMGTSKKNEEEKRRGLDKRTPAQAAFEKMQEKRQMERILKKASKT 84
Query: 104 RSLYGVEQKGKHLSMVPGSYIKDGPKKSDT 133
VE +HL + Y D PK S T
Sbjct: 85 HK-QRVEDFNRHLDTLTEHY--DIPKVSWT 111
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 31.6 bits (70), Expect = 0.75
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 SEQQMDLKDLMPTKRKYMWKTAEDRRMS-DLTCVLEWLERRQGKKKQAPEKQKPKVVTVL 60
+E++ D+K L ++ Y +ED+ +S + E++E + KKK++ E+++
Sbjct: 158 TEKEKDIKGLSKKRKMY----SEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTK 213
Query: 61 KRNKKKEEKKGK 72
K+ K K+ K K
Sbjct: 214 KKKKHKKHSKKK 225
Score = 30.0 bits (66), Expect = 2.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLT-----------------CVLEWLER-RQ 42
MSE + D KD + K+K T +++ + L+ E++E R
Sbjct: 137 MSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRA 196
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGK 72
KKK + E++K T K+ KK KK K
Sbjct: 197 KKKKSSEEREKATEKTKKKKKHKKHSKKKK 226
Score = 29.6 bits (65), Expect = 2.8
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 17/182 (9%)
Query: 25 DRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVT-----VLKRNKKKEEKKGKGLMTARG 79
+++ + E+ E+ K+ EK + K+++ KR +KK+EKK G ++
Sbjct: 39 EKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSS 98
Query: 80 GNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSM-VPGSYIKDGPKKSDTDIKDA 138
+ D+ +S +K + K SM S KD KK KD
Sbjct: 99 SSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKS-KDG 157
Query: 139 VDPESTQRPNPFRRQSIVLD-PMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKS 197
+ E + +R+ D P+ E S+ +R A ++K EK+
Sbjct: 158 TEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVR---------AKKKKSSEEREKA 208
Query: 198 TE 199
TE
Sbjct: 209 TE 210
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 31.6 bits (70), Expect = 0.75
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 SEQQMDLKDLMPTKRKYMWKTAEDRRMS-DLTCVLEWLERRQGKKKQAPEKQKPKVVTVL 60
+E++ D+K L ++ Y +ED+ +S + E++E + KKK++ E+++
Sbjct: 168 TEKEKDIKGLSKKRKMY----SEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTK 223
Query: 61 KRNKKKEEKKGK 72
K+ K K+ K K
Sbjct: 224 KKKKHKKHSKKK 235
Score = 30.0 bits (66), Expect = 2.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDRRMSDLT-----------------CVLEWLER-RQ 42
MSE + D KD + K+K T +++ + L+ E++E R
Sbjct: 147 MSETESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRA 206
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGK 72
KKK + E++K T K+ KK KK K
Sbjct: 207 KKKKSSEEREKATEKTKKKKKHKKHSKKKK 236
Score = 29.6 bits (65), Expect = 2.8
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 17/182 (9%)
Query: 25 DRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVT-----VLKRNKKKEEKKGKGLMTARG 79
+++ + E+ E+ K+ EK + K+++ KR +KK+EKK G ++
Sbjct: 49 EKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSS 108
Query: 80 GNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSM-VPGSYIKDGPKKSDTDIKDA 138
+ D+ +S +K + K SM S KD KK KD
Sbjct: 109 SSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKS-KDG 167
Query: 139 VDPESTQRPNPFRRQSIVLD-PMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKS 197
+ E + +R+ D P+ E S+ +R A ++K EK+
Sbjct: 168 TEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVR---------AKKKKSSEEREKA 218
Query: 198 TE 199
TE
Sbjct: 219 TE 220
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/94 (21%), Positives = 45/94 (47%)
Query: 41 RQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
++ +K+Q EK++ K + K+K++KK + + +RR +S++ +R R +
Sbjct: 447 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 506
Query: 101 ASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTD 134
S R+ +++K KD ++ + D
Sbjct: 507 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 540
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/94 (21%), Positives = 45/94 (47%)
Query: 41 RQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
++ +K+Q EK++ K + K+K++KK + + +RR +S++ +R R +
Sbjct: 331 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 390
Query: 101 ASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTD 134
S R+ +++K KD ++ + D
Sbjct: 391 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERD 424
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 31.6 bits (70), Expect = 0.75
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
E + ++ ++ E +KP R +KKE+KK K R + D+ S+ GKR R
Sbjct: 161 EEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKH--RDRKSSDSDSSDSESDTGKRARH 218
Query: 99 DAASYRSLYGVEQKGKH 115
+ ++ ++K KH
Sbjct: 219 TSKDSKAAKKKKKKKKH 235
>gi|148746220 spermatogenesis associated, serine-rich 2 [Homo
sapiens]
Length = 545
Score = 31.2 bits (69), Expect = 0.98
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 18/208 (8%)
Query: 48 APEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLY 107
A E K VT K+NKK KK K A N + ++ + ++ +
Sbjct: 74 ASEVLKEWTVTGKKKNKK---KKNKPKPAAEPSNGIPDSSKSVSIQEEQSAPSSEKGGMN 130
Query: 108 GVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGT-- 165
G G + +G + D ++ DPES R S MLQ G
Sbjct: 131 GYHVNGAINDTESVDSLSEGLETLSIDARELEDPESAMLDTLDRTGS-----MLQNGVSD 185
Query: 166 FNSQRATFIRDWSNKMPDMAYERKLKSLMEKSTEPKMETMRMLKPEEVLSCRYLRLSKEN 225
F ++ T +++ P A KSL +TE + M M E+V +LS N
Sbjct: 186 FETKSLTMHSIHNSQQPRNA----AKSLSRPTTETQFSNMGM---EDVPLATSKKLS-SN 237
Query: 226 IRTLLKLCKDAGMNVDIHPHMVEEDIDA 253
I +K + +++ + +V+E++DA
Sbjct: 238 IEKSVKDLQRCTVSLARYRVVVKEEMDA 265
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 31.2 bits (69), Expect = 0.98
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 35 LEWLERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGK 72
L L +R+ KK++ EK+K K K+ KKK++KK K
Sbjct: 96 LHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKK 133
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
+R + K+K+ +K+K K K+ KKK++KK K + +R + ++ K+ +K
Sbjct: 101 QREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKK 160
Score = 28.1 bits (61), Expect = 8.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
E+ + KKK+ +K+K K K+ KKK++KK K R R+ ++ K+ +K
Sbjct: 107 EKEKEKKKKKKKKKKKK-----KKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKK 161
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.2 bits (69), Expect = 0.98
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 6 MDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAP---EKQKPKVVTVLKR 62
M K TK+K KT + + T E+ + K+K+ EK+K K K+
Sbjct: 42 MKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKK 101
Query: 63 NKKKEEKKGKGL 74
KKK++KK K L
Sbjct: 102 KKKKKKKKKKKL 113
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 31.2 bits (69), Expect = 0.98
Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 51/240 (21%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDR--RMSDLTCVLEWLERRQGKKKQAPEKQKPKVVT 58
+S ++ D+ T +K + K ED+ R+ D ++R+ + K+ +K + KV
Sbjct: 31 VSSKERPKDDIKLTAKKEVSKAPEDKKKRLED--------DKRKKEDKERKKKDEEKVKA 82
Query: 59 VLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSM 118
+ KK+EE+K K ++ + Q+ KR +++ A+ + +++K + + +
Sbjct: 83 EEESKKKEEEEKKK--------HQEEERKKQEEQAKRQQEEEAAAQ----MKEKEESIQL 130
Query: 119 VPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWS 178
++ + +K + K+ P+S N F R LD L++ T
Sbjct: 131 HQEAWERHHLRK-ELRSKNQNAPDSRPEENFFSR----LDSSLKKNT------------- 172
Query: 179 NKMPDMAYERKLKSLMEKSTEPKMETMRMLK-----PEEVLSCRYLRLSKENIRTLLKLC 233
A+ +KLK++ E+ + L E V S +L ++ + LC
Sbjct: 173 ------AFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLC 226
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 31.2 bits (69), Expect = 0.98
Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 51/240 (21%)
Query: 1 MSEQQMDLKDLMPTKRKYMWKTAEDR--RMSDLTCVLEWLERRQGKKKQAPEKQKPKVVT 58
+S ++ D+ T +K + K ED+ R+ D ++R+ + K+ +K + KV
Sbjct: 31 VSSKERPKDDIKLTAKKEVSKAPEDKKKRLED--------DKRKKEDKERKKKDEEKVKA 82
Query: 59 VLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRSLYGVEQKGKHLSM 118
+ KK+EE+K K ++ + Q+ KR +++ A+ + +++K + + +
Sbjct: 83 EEESKKKEEEEKKK--------HQEEERKKQEEQAKRQQEEEAAAQ----MKEKEESIQL 130
Query: 119 VPGSYIKDGPKKSDTDIKDAVDPESTQRPNPFRRQSIVLDPMLQEGTFNSQRATFIRDWS 178
++ + +K + K+ P+S N F R LD L++ T
Sbjct: 131 HQEAWERHHLRK-ELRSKNQNAPDSRPEENFFSR----LDSSLKKNT------------- 172
Query: 179 NKMPDMAYERKLKSLMEKSTEPKMETMRMLK-----PEEVLSCRYLRLSKENIRTLLKLC 233
A+ +KLK++ E+ + L E V S +L ++ + LC
Sbjct: 173 ------AFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLC 226
>gi|92110019 hypothetical protein LOC55672 [Homo sapiens]
Length = 1214
Score = 31.2 bits (69), Expect = 0.98
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 98 KDAASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDT------DIKDAVDPESTQRPNPFR 151
+DA + + G ++SMV + GP S+ ++ + + P+ ++ FR
Sbjct: 252 QDAVNILPVPGPTSSATNVSMV----VSAGPLSSEKAEMNILEMNEKLRPQLAEKKQQFR 307
Query: 152 RQSIVLDPMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKSTEPKMETM--RMLK 209
L+E F +Q A F+ + NK E +KS++ + K E + ++ +
Sbjct: 308 N--------LKEKCFVTQLAGFLANQQNKYKYEECEDLIKSMLRNERQFKEEKLAEQLKQ 359
Query: 210 PEEVLSCRYLRLSKE----NIRTLLKLCKDAGMNVDIH 243
EE+ + L S+E +R L+ +DA +++ H
Sbjct: 360 AEELRQYKVLVHSQERELTQLREKLREGRDASRSLNQH 397
>gi|26190614 rhotekin 2 [Homo sapiens]
Length = 609
Score = 31.2 bits (69), Expect = 0.98
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 36 EWLERRQGKKKQAPEKQKPKVVTVLKRNKKKEE--KKGKGLMTARGGNRRDTETSQQALG 93
E L +GKK+QAP K+ LK ++ K G + + DT+ S L
Sbjct: 492 EPLHDEKGKKRQAPLPPSDKLPFSLKSQSNTDQLVKDNWGKTSVSQTSSLDTKLS--TLM 549
Query: 94 KRFRKDAASYRSLYGVEQK----GKHLSMVPGSYIKDGPKKSDTDIKDAVDPES 143
+K A+ R L + G+H K P IKD +DP S
Sbjct: 550 HHLQKPMAAPRKLLPARRNRLSDGEHTDTKTNFEAKPVPAPRQKSIKDILDPRS 603
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 40 RRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
+ +G+K++ P K+ PK + V+ N K EKK K R S A+ ++F+K+
Sbjct: 284 KEEGEKEKKPRKKVPKQLGVVALNSHKSEKKKK---------RYKDSLSLAAMIRKFQKE 334
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 30.8 bits (68), Expect = 1.3
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 3 EQQMDLKDLMPTKRKYMWKTAEDRRMSDLTCVLEWLERRQGKKKQAPEKQKPKVVTVLKR 62
E++ K+ KRK K + + E ++R+ K+K+ E+++ + +
Sbjct: 24 EKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEE 83
Query: 63 NKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
+K+EE+K +G + RR E ++ KR RK
Sbjct: 84 EEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRRK 119
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 30.8 bits (68), Expect = 1.3
Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKG---KGLMTARGG---NRRDTETSQQAL 92
++ +G+K+ + + + V+ NK +EE+K +GL+ A G R+ E +++
Sbjct: 436 DKAKGRKESEFDDEPKFMSKVIGANKNQEEEKSGKWEGLVYAPPGKEKQRKTEELEEESF 495
Query: 93 GKRFRKDAASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQRPN---- 148
+R +K+ RS +G H VP + K+ + + P T
Sbjct: 496 PERSKKEDRGKRS------EGGHRGFVPEKNFRVTAYKAVQEKSSSPPPRKTSESRDKLG 549
Query: 149 -----PFRRQSIVLDPMLQEGTFNSQRATFIRDWSNKMPDMAYERKLKSLMEKSTEPKME 203
P + S + +E N + +F D + +A ERKL + S + + E
Sbjct: 550 AKGDFPTGKSSF---SITREAQVNVRMDSFDEDLARPSGLLAQERKLCRDLVHSNKKEQE 606
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 30.4 bits (67), Expect = 1.7
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
+ R + ++PEK P V K+ KKKE+K + ++ + S + K+ RK
Sbjct: 820 KHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRK 879
Query: 99 DAASYRSLYGVEQKGKHLSMVPGSYIKDG-PKKSDTDIKDAVDPEST 144
+ + K K PGS G P ++ ++ + PES+
Sbjct: 880 EKEE-----RTKGKKKSKKQPPGSEEAAGEPVQNGAPEEEQLPPESS 921
Score = 30.0 bits (66), Expect = 2.2
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 39 ERRQGKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRK 98
ER + KKK+ +K+ PK R +K+E KGK +++ S++A G+ +
Sbjct: 855 ERDKEKKKEKEKKKSPKPKKKKHRKEKEERTKGK------KKSKKQPPGSEEAAGEPVQN 908
Query: 99 DAASYRSLYGVEQKGKHLSMVPGSYIK 125
A L + + + SY+K
Sbjct: 909 GAPEEEQL---PPESSYSLLAENSYVK 932
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKK---EEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
G+ +PEK KR+K +EKKGKG + ++G E Q+ +G D
Sbjct: 1297 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGD 1356
Query: 100 AASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQR 146
++ +S ++ K K KK+ T KD+ P ++
Sbjct: 1357 QSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST--KDSESPSQKKK 1401
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
G + K++ K K++K+K+EKK K A+ + +D+E+ Q K+ +K A
Sbjct: 1355 GDQSNPKSKKEKKKSDKRKKDKEKKEKKKK----AKKASTKDSESPSQKKKKKKKKTA 1408
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKK---EEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
G+ +PEK KR+K +EKKGKG + ++G E Q+ +G D
Sbjct: 1336 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGD 1395
Query: 100 AASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQR 146
++ +S ++ K K KK+ T KD+ P ++
Sbjct: 1396 QSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST--KDSESPSQKKK 1440
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
G + K++ K K++K+K+EKK K A+ + +D+E+ Q K+ +K A
Sbjct: 1394 GDQSNPKSKKEKKKSDKRKKDKEKKEKKKK----AKKASTKDSESPSQKKKKKKKKTA 1447
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKK---EEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
G+ +PEK KR+K +EKKGKG + ++G E Q+ +G D
Sbjct: 1373 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGD 1432
Query: 100 AASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQR 146
++ +S ++ K K KK+ T KD+ P ++
Sbjct: 1433 QSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST--KDSESPSQKKK 1477
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
G + K++ K K++K+K+EKK K A+ + +D+E+ Q K+ +K A
Sbjct: 1431 GDQSNPKSKKEKKKSDKRKKDKEKKEKKKK----AKKASTKDSESPSQKKKKKKKKTA 1484
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKK---EEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
G+ +PEK KR+K +EKKGKG + ++G E Q+ +G D
Sbjct: 1296 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGD 1355
Query: 100 AASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQR 146
++ +S ++ K K KK+ T KD+ P ++
Sbjct: 1356 QSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST--KDSESPSQKKK 1400
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
G + K++ K K++K+K+EKK K A+ + +D+E+ Q K+ +K A
Sbjct: 1354 GDQSNPKSKKEKKKSDKRKKDKEKKEKKKK----AKKASTKDSESPSQKKKKKKKKTA 1407
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKK---EEKKGKGLMTARGGNRRDTETSQQALGKRFRKD 99
G+ +PEK KR+K +EKKGKG + ++G E Q+ +G D
Sbjct: 1335 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGD 1394
Query: 100 AASYRSLYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPESTQR 146
++ +S ++ K K KK+ T KD+ P ++
Sbjct: 1395 QSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST--KDSESPSQKKK 1439
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 43 GKKKQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDA 100
G + K++ K K++K+K+EKK K A+ + +D+E+ Q K+ +K A
Sbjct: 1393 GDQSNPKSKKEKKKSDKRKKDKEKKEKKKK----AKKASTKDSESPSQKKKKKKKKTA 1446
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 46 KQAPEKQKPKVVTVLKRNKKKEEKKGKGLMTARGGNRRDTETSQQALGKRFRKDAASYRS 105
KQA KQ+ K L++ K++E +K + R+ E ++ ++ ++ R
Sbjct: 428 KQALRKQQTKAWKKLQQQKEQERQKEE-------DQRKQAEEEER---RKREEEIRKIRD 477
Query: 106 LYGVEQKGKHLSMVPGSYIKDGPKKSDTDIKDAVDPEST 144
L E++ + G + K SD D++ ++D + T
Sbjct: 478 LSNQEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPT 516
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,408,269
Number of Sequences: 37866
Number of extensions: 473438
Number of successful extensions: 2058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 211
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.