UPF3B 2907

Name: UPF3B	Sequence: fasta or formatted (470aa)		NCBI GI: 12711674
Description: UPF3 regulator of nonsense transcripts homolog B isoform 2		Referenced in: RNA-binding Proteins RNases and RNA Stability
Other entries for this name: alt prot [483aa] UPF3 regulator of nonsense transcripts homolog B isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 19 2 C cysteine 0.4 2 1 D aspartate 7.2 34 3 E glutamate 16.0 75 3 F phenylalanine 2.6 12 2 G glycine 4.3 20 3 H histidine 1.1 5 1 I isoleucine 3.6 17 2 K lysine 15.7 74 3 L leucine 6.6 31 2 M methionine 1.5 7 1 N asparagine 2.3 11 1 P proline 4.7 22 2 Q glutamine 3.4 16 1 R arginine 11.9 56 4 S serine 5.5 26 2 T threonine 4.7 22 2 V valine 1.7 8 2 W tryptophan 0.2 1 1 Y tyrosine 2.6 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 UPF3 regulator of nonsense transcripts homolog B iso... UPF3B 0.990 UPF3 regulator of nonsense transcripts homolog B iso... UPF3A 0.409 UPF3 regulator of nonsense transcripts homolog A iso... UPF3A 0.337 UPF3 regulator of nonsense transcripts homolog A iso... LOC100286959 0.086 PREDICTED: hypothetical protein XP_002343921 TCHH 0.081 trichohyalin LOC100133599 0.080 PREDICTED: hypothetical protein RBM25 0.079 RNA binding motif protein 25 LOC283767 0.078 golgi autoantigen, golgin subfamily a-like LOC283685 0.078 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC100133599 0.078 PREDICTED: hypothetical protein LOC727832 0.076 golgi autoantigen, golgin subfamily a-like LOC440243 0.075 PREDICTED: Putative golgin subfamily A member 6-lik... LOC100131202 0.075 PREDICTED: hypothetical protein ZC3H13 0.073 zinc finger CCCH-type containing 13 LOC100131202 0.072 PREDICTED: hypothetical protein LOC645202 0.072 PREDICTED: hypothetical protein LOC645202 SFRS12 0.072 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.072 splicing factor, arginine/serine-rich 12 isoform b [... INCENP 0.070 inner centromere protein antigens 135/155kDa isofor... LOC283685 0.070 PREDICTED: golgi autoantigen, golgin subfamily a-li... INCENP 0.070 inner centromere protein antigens 135/155kDa isofor... TAF3 0.069 RNA polymerase II transcription factor TAFII140 [Ho... LOC100134067 0.067 PREDICTED: hypothetical protein LOC100288837 0.064 PREDICTED: hypothetical protein XP_002343931, parti... WDR87 0.062 NYD-SP11 protein BAT2D1 0.062 HBxAg transactivated protein 2 LOC100133220 0.061 PREDICTED: hypothetical protein LOC400352 0.061 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.061 PREDICTED: similar to Putative golgin subfamily A m... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.