UPF2 9857

Name: UPF2	Sequence: fasta or formatted (1272aa)		NCBI GI: 18375676
Description: UPF2 regulator of nonsense transcripts homolog		Referenced in: RNases and RNA Stability
Other entries for this name: alt mRNA [1272aa] UPF2 regulator of nonsense transcripts homolog
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 64 3 C cysteine 1.7 22 2 D aspartate 7.0 89 3 E glutamate 12.0 153 6 F phenylalanine 3.6 46 2 G glycine 3.7 47 3 H histidine 2.7 34 3 I isoleucine 4.2 53 2 K lysine 9.9 126 3 L leucine 10.0 127 2 M methionine 2.5 32 2 N asparagine 5.0 63 2 P proline 4.2 54 3 Q glutamine 4.9 62 3 R arginine 5.9 75 3 S serine 6.1 77 2 T threonine 4.0 51 2 V valine 4.7 60 2 W tryptophan 0.7 9 2 Y tyrosine 2.2 28 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 UPF2 regulator of nonsense transcripts homolog [Homo... UPF2 1.000 UPF2 regulator of nonsense transcripts homolog [Homo... LOC100133599 0.021 PREDICTED: hypothetical protein LOC100133599 0.021 PREDICTED: hypothetical protein LOC100294088 0.020 PREDICTED: hypothetical protein, partial MAP7D2 0.019 MAP7 domain containing 2 EIF5B 0.019 eukaryotic translation initiation factor 5B TCHH 0.019 trichohyalin LOC283685 0.019 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.019 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC440243 0.018 PREDICTED: Putative golgin subfamily A member 6-lik... GIGYF2 0.018 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.018 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.018 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.018 GRB10 interacting GYF protein 2 isoform b CALD1 0.018 caldesmon 1 isoform 1 LOC283767 0.017 golgi autoantigen, golgin subfamily a-like INCENP 0.017 inner centromere protein antigens 135/155kDa isofor... INCENP 0.017 inner centromere protein antigens 135/155kDa isofor... LOC645202 0.017 PREDICTED: hypothetical protein LOC645202 LOC727832 0.017 golgi autoantigen, golgin subfamily a-like TNIK 0.017 TRAF2 and NCK interacting kinase isoform 6 TNIK 0.017 TRAF2 and NCK interacting kinase isoform 5 TNIK 0.017 TRAF2 and NCK interacting kinase isoform 2 TNIK 0.017 TRAF2 and NCK interacting kinase isoform 1 BAT2D1 0.016 HBxAg transactivated protein 2 RBM25 0.016 RNA binding motif protein 25 WDR87 0.016 NYD-SP11 protein MAP7 0.016 microtubule-associated protein 7 NEFH 0.016 neurofilament, heavy polypeptide 200kDa Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.