Guide to the Human Genome
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Name: FAM134B Sequence: fasta or formatted (356aa) NCBI GI: 21361617
Description:

hypothetical protein LOC54463 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {497aa} hypothetical protein LOC54463 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         18           2
 C cysteine            2.2          8           1
 D aspartate           8.4         30           2
 E glutamate           9.3         33           2
 F phenylalanine       4.8         17           2
 G glycine             6.5         23           2
 H histidine           1.4          5           1
 I isoleucine          4.5         16           1
 K lysine              6.5         23           2
 L leucine            12.4         44           4
 M methionine          1.4          5           1
 N asparagine          3.4         12           1
 P proline             4.5         16           1
 Q glutamine           5.3         19           2
 R arginine            2.2          8           1
 S serine             11.0         39           2
 T threonine           5.3         19           1
 V valine              3.7         13           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54463 isoform 2 
FAM134B               0.965   hypothetical protein LOC54463 isoform 1 
FAM134C               0.288   hypothetical protein LOC162427 
FAM134A               0.175   hypothetical protein LOC79137 
NOP14                 0.016   probable nucleolar complex protein 14 
BRWD1                 0.015   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.015   bromodomain and WD repeat domain containing 1 isofor...
CHRNB3                0.012   cholinergic receptor, nicotinic, beta polypeptide 3 [...
WDR43                 0.012   WD repeat domain 43 
CHRNA5                0.010   cholinergic receptor, nicotinic, alpha 5 
EHMT2                 0.010   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.010   euchromatic histone-lysine N-methyltransferase 2 is...
IBSP                  0.010   integrin-binding sialoprotein precursor 
DSPP                  0.010   dentin sialophosphoprotein preproprotein 
PKNOX2                0.010   PBX/knotted 1 homeobox 2 
LOC643802             0.010   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
LOC728792             0.010   PREDICTED: hypothetical protein 
LOC643802             0.010   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
TRIM44                0.010   DIPB protein 
CASC1                 0.010   cancer susceptibility candidate 1 isoform b 
CASC1                 0.010   cancer susceptibility candidate 1 isoform c 
CASC1                 0.010   cancer susceptibility candidate 1 isoform a 
EEF1B2                0.010   eukaryotic translation elongation factor 1 beta 2 [H...
EEF1B2                0.010   eukaryotic translation elongation factor 1 beta 2 [Ho...
EEF1B2                0.010   eukaryotic translation elongation factor 1 beta 2 [H...
CYTSA                 0.009   cytospin A 
CYTSA                 0.009   cytospin A 
LOC643677             0.009   hypothetical protein LOC643677 
LOC643677             0.009   PREDICTED: hypothetical protein LOC643677 
SPANXN2               0.009   SPANX-N2 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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