Guide to the Human Genome
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Name: FAM134A Sequence: fasta or formatted (543aa) NCBI GI: 187607445
Description:

hypothetical protein LOC79137

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         51           3
 C cysteine            1.1          6           1
 D aspartate           4.4         24           1
 E glutamate          10.5         57           5
 F phenylalanine       2.2         12           2
 G glycine             8.5         46           5
 H histidine           2.2         12           2
 I isoleucine          1.8         10           1
 K lysine              2.2         12           2
 L leucine            15.8         86           2
 M methionine          1.3          7           1
 N asparagine          1.5          8           1
 P proline             9.4         51           2
 Q glutamine           4.1         22           2
 R arginine            3.5         19           1
 S serine              9.6         52           4
 T threonine           4.4         24           2
 V valine              5.3         29           2
 W tryptophan          1.3          7           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79137 
FAM134C               0.196   hypothetical protein LOC162427 
FAM134B               0.140   hypothetical protein LOC54463 isoform 1 
FAM134B               0.114   hypothetical protein LOC54463 isoform 2 
MLL2                  0.027   myeloid/lymphoid or mixed-lineage leukemia 2 
RERE                  0.023   atrophin-1 like protein isoform b 
RERE                  0.023   atrophin-1 like protein isoform a 
RERE                  0.023   atrophin-1 like protein isoform a 
FBLIM1                0.022   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.022   filamin-binding LIM protein-1 isoform a 
CDGAP                 0.021   Cdc42 GTPase-activating protein 
SETD1A                0.020   SET domain containing 1A 
NEFM                  0.020   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.020   neurofilament, medium polypeptide 150kDa isoform 2 ...
COL15A1               0.019   alpha 1 type XV collagen precursor 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
ARAP1                 0.018   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
PRR12                 0.018   proline rich 12 
MBD6                  0.017   methyl-CpG binding domain protein 6 
FAM75A6               0.016   hypothetical protein LOC389730 
FAM75A2               0.016   hypothetical protein LOC642265 
FAM75A1               0.016   hypothetical protein LOC647060 
ARL6IP1               0.016   ADP-ribosylation factor-like 6 interacting protein [...
FAM75A4               0.016   PREDICTED: family with sequence similarity 75, memb...
FAM75A4               0.016   PREDICTED: family with sequence similarity 75, memb...
FAM75A7               0.016   hypothetical protein LOC26165 
FAM75A3               0.016   hypothetical protein LOC727830 
FAM75A5               0.016   hypothetical protein LOC727905 
FMNL1                 0.015   formin-like 1 
MUC16                 0.015   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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