Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 21281679

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21281679 T-cell activation protein phosphatase 2C [Homo
sapiens]
         (304 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21281679 T-cell activation protein phosphatase 2C [Homo sapiens]   617   e-177
gi|7661862 protein phosphatase 1F [Homo sapiens]                       33   0.24 
gi|149944715 protein phosphatase 1H (PP2C domain containing) [Ho...    32   0.91 
gi|131412228 keratin 13 isoform b [Homo sapiens]                       30   2.0  
gi|131412225 keratin 13 isoform a [Homo sapiens]                       30   2.0  
gi|65506328 protein phosphatase 1J (PP2C domain containing) [Hom...    30   3.5  
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    30   3.5  
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa...    30   3.5  
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    30   3.5  
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    30   3.5  
gi|122937319 even-skipped homeobox 2 [Homo sapiens]                    29   4.5  
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           29   5.9  
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          29   5.9  
gi|194018511 keratin 77 [Homo sapiens]                                 29   5.9  
gi|4506775 membrane-bound transcription factor site-1 protease p...    29   5.9  
gi|62739186 complement factor H isoform a precursor [Homo sapiens]     28   7.7  
gi|5174517 SMAD family member 7 [Homo sapiens]                         28   7.7  
gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Ho...    28   7.7  
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]            28   7.7  
gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Ho...    28   7.7  
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ...    28   7.7  
gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Ho...    28   7.7  
gi|119395754 keratin 5 [Homo sapiens]                                  28   7.7  
gi|167555104 interferon regulatory factor 4 [Homo sapiens]             28   7.7  
gi|30089948 protein phosphatase 1E [Homo sapiens]                      28   7.7  
gi|7705793 lactamase, beta 2 [Homo sapiens]                            28   7.7  
gi|122937424 one cut homeobox 3 [Homo sapiens]                         28   7.7  

>gi|21281679 T-cell activation protein phosphatase 2C [Homo sapiens]
          Length = 304

 Score =  617 bits (1591), Expect = e-177
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD 60
           MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD
Sbjct: 1   MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD 60

Query: 61  DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT 120
           DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT
Sbjct: 61  DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT 120

Query: 121 TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF 180
           TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF
Sbjct: 121 TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF 180

Query: 181 NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK 240
           NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK
Sbjct: 181 NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK 240

Query: 241 LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA 300
           LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA
Sbjct: 241 LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA 300

Query: 301 EYTD 304
           EYTD
Sbjct: 301 EYTD 304


>gi|7661862 protein phosphatase 1F [Homo sapiens]
          Length = 454

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 47/214 (21%)

Query: 76  VADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILTTSYCE-----LLQNK 130
           V DG GG     VD ++++   + T      E   +P++P G L  ++       L + K
Sbjct: 196 VFDGHGG-----VDAARYAAVHVHTNAARQPE---LPTDPEGALREAFRRTDQMFLRKAK 247

Query: 131 VPLLGSSTA--CIVVLDRTSHRLHTANLGDSGFLVVRGGEVV-----HRSDEQ------- 176
              L S T   C ++   T   LH A LGDS  ++V+ G+VV     HR + Q       
Sbjct: 248 RERLQSGTTGVCALIAGAT---LHVAWLGDSQVILVQQGQVVKLMEPHRPERQDEKARIE 304

Query: 177 ------QHYFNTPFQLSIAPPEAEGVV-----LSDSPDAADSTSFDVQLGDIILTATDGL 225
                  H        ++A   A G V     +S   DAA       +  D +L A DG 
Sbjct: 305 ALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSE--DYLLLACDGF 362

Query: 226 FDNMPDYMILQELKKLKNSNYESIQQTARSIAEQ 259
           FD +P     QE+  L  S+    Q +   +AE+
Sbjct: 363 FDVVPH----QEVVGLVQSHLTRQQGSGLRVAEE 392


>gi|149944715 protein phosphatase 1H (PP2C domain containing) [Homo
           sapiens]
          Length = 514

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 135 GSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDE 175
           G  TA IV+      +L+ AN GDS  +++R GE++  S E
Sbjct: 267 GGCTALIVIC--LLGKLYVANAGDSRAIIIRNGEIIPMSSE 305


>gi|131412228 keratin 13 isoform b [Homo sapiens]
          Length = 420

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 27 GGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYG 59
          GGG GG YG    G GFG  F  G +  GAC G
Sbjct: 66 GGGLGGGYGGGLGG-GFGGGFAGGFVDFGACDG 97


>gi|131412225 keratin 13 isoform a [Homo sapiens]
          Length = 458

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 27 GGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYG 59
          GGG GG YG    G GFG  F  G +  GAC G
Sbjct: 66 GGGLGGGYGGGLGG-GFGGGFAGGFVDFGACDG 97


>gi|65506328 protein phosphatase 1J (PP2C domain containing) [Homo
           sapiens]
          Length = 505

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 140 CIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDE 175
           C +V+     +++ AN GDS  ++VR GE++  S E
Sbjct: 261 CALVVIYLLGKVYVANAGDSRAIIVRNGEIIPMSRE 296


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 12  ARAVLGGLSQTDPRAGGGGGGDYGLVTAGCG 42
           A AV    +     AGGGGGG YG  +AG G
Sbjct: 278 AGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308


>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
           sapiens]
          Length = 1819

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 272 PFAQFACDNGLNVRGGKPDDITVLLSIVAEY 302
           P   F    G++V G  P+ I+ LLS VAEY
Sbjct: 373 PAQAFVVKRGVHVSGASPESISSLLSEVAEY 403


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 12  ARAVLGGLSQTDPRAGGGGGGDYGLVTAGCG 42
           A AV    +     AGGGGGG YG  +AG G
Sbjct: 278 AGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 12  ARAVLGGLSQTDPRAGGGGGGDYGLVTAGCG 42
           A AV    +     AGGGGGG YG  +AG G
Sbjct: 278 AGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308


>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
          Length = 476

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/36 (44%), Positives = 16/36 (44%)

Query: 12  ARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDF 47
           A A    L       GGGGGG  G   AG G G DF
Sbjct: 402 AAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDF 437


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 25  RAGGGGGGDYGLVTAGCGFGKDFRKGL-LKKGACYGDDACFVARHRSADVLGVADGVGGW 83
           R+GGG GGD      G G+G D   G    +G  YG D       R     G   G GG 
Sbjct: 447 RSGGGYGGD-----RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 501

Query: 84  R-DYGVDPSQFSG 95
           R  YG D   + G
Sbjct: 502 RGGYGGDRGGYGG 514


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 25  RAGGGGGGDYGLVTAGCGFGKDFRKGL-LKKGACYGDDACFVARHRSADVLGVADGVGGW 83
           R+GGG GGD      G G+G D   G    +G  YG D       R     G   G GG 
Sbjct: 450 RSGGGYGGD-----RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 504

Query: 84  R-DYGVDPSQFSG 95
           R  YG D   + G
Sbjct: 505 RGGYGGDRGGYGG 517


>gi|194018511 keratin 77 [Homo sapiens]
          Length = 578

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 20  SQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGDDACFVARHRSADVLGVADG 79
           SQ     G GGGG YG    G G G  +  G   +G          AR RS    G   G
Sbjct: 492 SQVSVNGGAGGGGSYGSGGYGGGSGGGYGGGRSYRGG--------GARGRSGGGYGSGCG 543

Query: 80  VGG 82
            GG
Sbjct: 544 GGG 546


>gi|4506775 membrane-bound transcription factor site-1 protease
           preproprotein [Homo sapiens]
          Length = 1052

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 58  YGDDACFVARHRSADVLGVADGVGGWRDYGVDPSQFS 94
           YGD  C    HR  D   + D +  +  YGV P   S
Sbjct: 844 YGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLS 880


>gi|62739186 complement factor H isoform a precursor [Homo sapiens]
          Length = 1231

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 185 QLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKKLKNS 244
           QLS +PP   G    DS +   S SF + +G   +T   G++  +P  + + +LKK K+S
Sbjct: 703 QLS-SPPYYYG----DSVEFNCSESFTM-IGHRSITCIHGVWTQLPQCVAIDKLKKCKSS 756

Query: 245 NYESIQQTARSIAEQAH 261
           N   +++  ++  E  H
Sbjct: 757 NLIILEEHLKNKKEFDH 773


>gi|5174517 SMAD family member 7 [Homo sapiens]
          Length = 426

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 16 LGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFR 48
          L G   TD RA G GGG  G   AGC  GK  R
Sbjct: 37 LRGEGATDSRAHGAGGGGPG--RAGCCLGKAVR 67


>gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
           sapiens]
          Length = 2139

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 169 VVHRSDEQQHYFNTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDN 228
           ++ R ++  H  +  F L+I P + E  +++ +   + +    VQ+   +L+ATD   ++
Sbjct: 517 IIFRMEDGHHQVDFLFPLTILPVDDEPPMVNTNTGLSLTEGQVVQISPFVLSATDIDSED 576

Query: 229 MPDYMILQELKKLKNSNYESIQQTARSIAEQAHEL 263
              + +L E + LK +  E   + A   +   H L
Sbjct: 577 STIHFVL-ENQPLKGNEEEPQWELAPGSSHSGHYL 610


>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 25/100 (25%)

Query: 20  SQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGAC----YGDDACFVARHRSADVLG 75
           S   PRA GGGGGD G      G G   R+   + G C    Y D  CF  R    D L 
Sbjct: 34  SPRGPRA-GGGGGDAG------GGGAPVRRA--RGGGCWARAYQDARCF-GRGEGGD-LQ 82

Query: 76  VADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNP 115
           V+ G G        P++F     R   R  +  R VP+ P
Sbjct: 83  VSSGPG-----AAPPAEF-----RASARSAQGSRDVPAGP 112


>gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
           sapiens]
          Length = 2139

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 169 VVHRSDEQQHYFNTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDN 228
           ++ R ++  H  +  F L+I P + E  +++ +   + +    VQ+   +L+ATD   ++
Sbjct: 517 IIFRMEDGHHQVDFLFPLTILPVDDEPPMVNTNTGLSLTEGQVVQISPFVLSATDIDSED 576

Query: 229 MPDYMILQELKKLKNSNYESIQQTARSIAEQAHEL 263
              + +L E + LK +  E   + A   +   H L
Sbjct: 577 STIHFVL-ENQPLKGNEEEPQWELAPGSSHSGHYL 610


>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
           sapiens]
          Length = 255

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 25/100 (25%)

Query: 20  SQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGAC----YGDDACFVARHRSADVLG 75
           S   PRA GGGGGD G      G G   R+   + G C    Y D  CF  R    D L 
Sbjct: 34  SPRGPRA-GGGGGDAG------GGGAPVRRA--RGGGCWARAYQDARCF-GRGEGGD-LQ 82

Query: 76  VADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNP 115
           V+ G G        P++F     R   R  +  R VP+ P
Sbjct: 83  VSSGPG-----AAPPAEF-----RASARSAQGSRDVPAGP 112


>gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
           sapiens]
          Length = 2139

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 169 VVHRSDEQQHYFNTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDN 228
           ++ R ++  H  +  F L+I P + E  +++ +   + +    VQ+   +L+ATD   ++
Sbjct: 517 IIFRMEDGHHQVDFLFPLTILPVDDEPPMVNTNTGLSLTEGQVVQISPFVLSATDIDSED 576

Query: 229 MPDYMILQELKKLKNSNYESIQQTARSIAEQAHEL 263
              + +L E + LK +  E   + A   +   H L
Sbjct: 577 STIHFVL-ENQPLKGNEEEPQWELAPGSSHSGHYL 610


>gi|119395754 keratin 5 [Homo sapiens]
          Length = 590

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 12 ARAVLGGLSQTD----PRAGGGGGGDYGLVT--AGCGFG 44
          A A+   +S+T      R+GGGGGG +G V+    CG G
Sbjct: 20 ASAITPSVSRTSFTSVSRSGGGGGGGFGRVSLAGACGVG 58


>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
          Length = 451

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 27 GGGGGGDYGLVTAGCGFGK 45
          GGG GG++G+    CG GK
Sbjct: 5  GGGRGGEFGMSAVSCGNGK 23


>gi|30089948 protein phosphatase 1E [Homo sapiens]
          Length = 755

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 28/132 (21%)

Query: 151 LHTANLGDSGFLVVRGGEVVH--------RSDEQQHY--------------FNTPFQLSI 188
           LH A +GDS  ++VR G+ V         R DE+Q                 N    +S 
Sbjct: 342 LHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSR 401

Query: 189 APPEAE--GVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNM-PDYMILQELKKLKNSN 245
           A  +AE    +  D+  A  ST  D    D ++ A DG +D + PD  +      LK +N
Sbjct: 402 AIGDAEHKPYICGDADSA--STVLD-GTEDYLILACDGFYDTVNPDEAVKVVSDHLKENN 458

Query: 246 YESIQQTARSIA 257
            +S     + +A
Sbjct: 459 GDSSMVAHKLVA 470


>gi|7705793 lactamase, beta 2 [Homo sapiens]
          Length = 288

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 137 STACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYFNTPFQLSIAPPEAEGV 196
           +T CI  L R   R      G+  ++ ++ G+V+           TP        +    
Sbjct: 97  TTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYTP-----GHTDDHMA 151

Query: 197 VLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYM-ILQELKKLK 242
           +L +  +A  S       GD IL     +F+++ DYM  L+EL K+K
Sbjct: 152 LLLEEENAIFS-------GDCILGEGTTVFEDLYDYMNSLKELLKIK 191


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 VLGGLSQTDPRAGGGGGGDYGLVTAG-CGFGKDFR 48
          V G  S  D   GGGGGG  G   AG  G G DFR
Sbjct: 47 VAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFR 81


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,699,146
Number of Sequences: 37866
Number of extensions: 513133
Number of successful extensions: 2012
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 78
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press