Guide to the Human Genome
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Name: CFH Sequence: fasta or formatted (1231aa) NCBI GI: 62739186
Description:

complement factor H isoform a precursor

Referenced in:

Complement

Other entries for this name:
alt prot [449aa] complement factor H isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         40           1
 C cysteine            6.7         82           1
 D aspartate           4.3         53           2
 E glutamate           7.6         94           2
 F phenylalanine       2.4         30           1
 G glycine             7.8         96           2
 H histidine           2.4         29           1
 I isoleucine          5.6         69           2
 K lysine              6.5         80           2
 L leucine             5.0         61           2
 M methionine          1.7         21           1
 N asparagine          4.8         59           1
 P proline             7.4         91           4
 Q glutamine           3.6         44           1
 R arginine            4.5         55           2
 S serine              7.6         93           2
 T threonine           6.2         76           3
 V valine              5.1         63           2
 W tryptophan          2.1         26           1
 Y tyrosine            5.6         69           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement factor H isoform a precursor 
CFH                   0.361   complement factor H isoform b precursor 
CFHR5                 0.171   complement factor H-related 5 
CFHR1                 0.153   complement factor H-related 1 
LOC100293069          0.153   PREDICTED: similar to complement factor H-related 1...
CFHR3                 0.131   complement factor H-related 3 
CR1                   0.109   complement receptor 1 isoform F precursor 
SVEP1                 0.108   polydom 
CR1                   0.107   complement receptor 1 isoform S precursor 
LOC100293069          0.105   PREDICTED: similar to complement factor H-related 1...
CFHR2                 0.079   H factor (complement)-like 3 
F13B                  0.077   coagulation factor XIII B subunit precursor 
CR2                   0.076   complement component (3d/Epstein Barr virus) recepto...
CFHR4                 0.071   complement factor H-related 4 
CR2                   0.067   complement component (3d/Epstein Barr virus) recepto...
CSMD3                 0.063   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.063   CUB and Sushi multiple domains 3 isoform 1 
CSMD1                 0.062   CUB and Sushi multiple domains 1 
CSMD3                 0.061   CUB and Sushi multiple domains 3 isoform 3 
CSMD2                 0.053   CUB and Sushi multiple domains 2 
C4BPA                 0.050   complement component 4 binding protein, alpha chain p...
SELP                  0.039   selectin P precursor 
CR1L                  0.038   complement component (3b/4b) receptor 1-like 
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.029   CD46 antigen, complement regulatory protein isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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