Guide to the Human Genome
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Name: PPTC7 Sequence: fasta or formatted (304aa) NCBI GI: 21281679
Description:

T-cell activation protein phosphatase 2C

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         23           2
 C cysteine            2.3          7           1
 D aspartate           8.2         25           2
 E glutamate           3.9         12           1
 F phenylalanine       4.3         13           1
 G glycine            11.5         35           6
 H histidine           2.0          6           1
 I isoleucine          3.6         11           2
 K lysine              3.3         10           2
 L leucine            10.2         31           2
 M methionine          1.6          5           1
 N asparagine          3.3         10           1
 P proline             4.3         13           2
 Q glutamine           3.9         12           2
 R arginine            5.3         16           1
 S serine              7.6         23           2
 T threonine           5.3         16           2
 V valine              7.9         24           2
 W tryptophan          0.3          1           1
 Y tyrosine            3.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell activation protein phosphatase 2C 
PPM1F                 0.014   protein phosphatase 1F 
PPM1H                 0.012   protein phosphatase 1H (PP2C domain containing) [Ho...
KRT13                 0.008   keratin 13 isoform b 
KRT13                 0.008   keratin 13 isoform a 
PPM1J                 0.008   protein phosphatase 1J (PP2C domain containing) [Hom...
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
TUBGCP6               0.008   tubulin, gamma complex associated protein 6 
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.008   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
EVX2                  0.007   even-skipped homeobox 2 
TAF15                 0.007   TBP-associated factor 15 isoform 2 
TAF15                 0.007   TBP-associated factor 15 isoform 1 
KRT77                 0.007   keratin 77 
MBTPS1                0.007   membrane-bound transcription factor site-1 protease p...
CFH                   0.005   complement factor H isoform a precursor 
SMAD7                 0.005   SMAD family member 7 
FREM3                 0.005   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
LOC100287499          0.005   PREDICTED: hypothetical protein 
FREM3                 0.005   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
LOC100287499          0.005   PREDICTED: hypothetical protein XP_002343643 
FREM3                 0.005   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
KRT5                  0.005   keratin 5 
IRF4                  0.005   interferon regulatory factor 4 
PPM1E                 0.005   protein phosphatase 1E 
LACTB2                0.005   lactamase, beta 2 
ONECUT3               0.005   one cut homeobox 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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