BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21040357 hemochromatosis protein isoform 11 precursor [Homo sapiens] (76 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21040357 hemochromatosis protein isoform 11 precursor [Homo s... 145 7e-36 gi|21040355 hemochromatosis protein isoform 10 precursor [Homo s... 99 7e-22 gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 99 7e-22 gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 99 7e-22 gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 99 7e-22 gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 99 7e-22 gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sa... 99 7e-22 gi|21040341 hemochromatosis protein isoform 3 precursor [Homo sa... 99 7e-22 gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 99 7e-22 gi|166295173 kin of IRRE like [Homo sapiens] 33 0.038 gi|17986001 major histocompatibility complex, class I, B precurs... 32 0.084 gi|52630342 major histocompatibility complex, class I, C precurs... 30 0.32 gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 30 0.32 gi|32967311 ephrin receptor EphA2 [Homo sapiens] 30 0.42 gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B... 30 0.42 gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B... 30 0.42 gi|5803070 leukocyte immunoglobulin-like receptor, subfamily B, ... 30 0.42 gi|4557535 solute carrier family 26, member 3 [Homo sapiens] 28 1.2 gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 28 1.6 gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 28 1.6 gi|108773799 ganglioside-induced differentiation-associated prot... 28 1.6 gi|108773797 ganglioside-induced differentiation-associated prot... 28 1.6 gi|167857792 programmed cell death 1 precursor [Homo sapiens] 28 2.1 gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 28 2.1 gi|10092665 sushi domain containing 2 [Homo sapiens] 28 2.1 gi|239753040 PREDICTED: hypothetical protein XP_002345331 [Homo ... 27 3.5 gi|239747598 PREDICTED: hypothetical protein XP_002347782 [Homo ... 27 3.5 gi|239741463 PREDICTED: hypothetical protein XP_002342210 [Homo ... 27 3.5 gi|157419150 protein tyrosine phosphatase, receptor type, M isof... 27 3.5 gi|157419152 protein tyrosine phosphatase, receptor type, M isof... 27 3.5 >gi|21040357 hemochromatosis protein isoform 11 precursor [Homo sapiens] Length = 76 Score = 145 bits (366), Expect = 7e-36 Identities = 76/76 (100%), Positives = 76/76 (100%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVISGIAVFVVILFIGILFIILRKR 60 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVISGIAVFVVILFIGILFIILRKR Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVISGIAVFVVILFIGILFIILRKR 60 Query: 61 QGSRGAMGHYVLAERE 76 QGSRGAMGHYVLAERE Sbjct: 61 QGSRGAMGHYVLAERE 76 >gi|21040355 hemochromatosis protein isoform 10 precursor [Homo sapiens] Length = 168 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 118 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 168 Score = 52.0 bits (123), Expect = 1e-07 Identities = 26/27 (96%), Positives = 26/27 (96%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQP 27 MGPRARPALLLLMLLQTAVLQGRLL P Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLLP 27 >gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sapiens] Length = 325 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 275 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 325 Score = 50.1 bits (118), Expect = 4e-07 Identities = 25/25 (100%), Positives = 25/25 (100%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLL 25 MGPRARPALLLLMLLQTAVLQGRLL Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLL 25 >gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sapiens] Length = 246 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 196 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 246 Score = 52.0 bits (123), Expect = 1e-07 Identities = 26/26 (100%), Positives = 26/26 (100%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQ 26 MGPRARPALLLLMLLQTAVLQGRLLQ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLQ 26 >gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sapiens] Length = 260 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 210 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 260 Score = 52.0 bits (123), Expect = 1e-07 Identities = 26/26 (100%), Positives = 26/26 (100%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQ 26 MGPRARPALLLLMLLQTAVLQGRLLQ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLQ 26 >gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sapiens] Length = 334 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 284 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 334 Score = 51.6 bits (122), Expect = 1e-07 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVIS---GIAVFVVILFI 50 MGPRARPALLLLMLLQTAVLQGRLL+ L +G G+++F + ++ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYV 53 >gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sapiens] Length = 256 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 206 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 256 Score = 51.6 bits (122), Expect = 1e-07 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVIS---GIAVFVVILFI 50 MGPRARPALLLLMLLQTAVLQGRLL+ L +G G+++F + ++ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYV 53 >gi|21040341 hemochromatosis protein isoform 3 precursor [Homo sapiens] Length = 242 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 192 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 242 Score = 51.6 bits (122), Expect = 1e-07 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVIS---GIAVFVVILFI 50 MGPRARPALLLLMLLQTAVLQGRLL+ L +G G+++F + ++ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYV 53 >gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sapiens] Length = 348 Score = 99.0 bits (245), Expect = 7e-22 Identities = 50/51 (98%), Positives = 51/51 (100%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 76 +PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE Sbjct: 298 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE 348 Score = 51.6 bits (122), Expect = 1e-07 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%) Query: 1 MGPRARPALLLLMLLQTAVLQGRLLQPSPSGTLVIGVIS---GIAVFVVILFI 50 MGPRARPALLLLMLLQTAVLQGRLL+ L +G G+++F + ++ Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYV 53 >gi|166295173 kin of IRRE like [Homo sapiens] Length = 757 Score = 33.5 bits (75), Expect = 0.038 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 17 TAVLQGRLLQPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSR 64 TA++Q + P G ++ G G ++ ++ FI ++F + R+R+GSR Sbjct: 482 TAIIQLEEREVLPVG-IIAGATIGASILLIFFFIALVFFLYRRRKGSR 528 >gi|17986001 major histocompatibility complex, class I, B precursor [Homo sapiens] Length = 362 Score = 32.3 bits (72), Expect = 0.084 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 26 QPSPSGTL-VIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHY 70 +PS T+ ++G+++G+AV V++ ++ ++ +R+ S G G Y Sbjct: 299 EPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSY 344 >gi|52630342 major histocompatibility complex, class I, C precursor [Homo sapiens] Length = 366 Score = 30.4 bits (67), Expect = 0.32 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 26 QPSPSGTL-VIGVISGIAVFVVILFIGILFIILRKRQGSRGAMG 68 +PS T+ ++G+++G+AV VV+ +G + + R+ S G G Sbjct: 299 EPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKG 342 >gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] Length = 1140 Score = 30.4 bits (67), Expect = 0.32 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Query: 29 PSGTLVIGVISGIAVFV-VILFIGILFIILR-KRQGSRGAM 67 P+ + IG I+GI + V V+LF+ LFII R K++G +M Sbjct: 850 PADSYQIGAIAGIIILVLVVLFLLALFIIYRHKQKGKESSM 890 >gi|32967311 ephrin receptor EphA2 [Homo sapiens] Length = 976 Score = 30.0 bits (66), Expect = 0.42 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 25 LQPSPSGTLVIGVISGIAVFVVILFI--GILFIILRKRQGSR 64 L P SG L VI G+AV VV+L + G+ F I R+R+ R Sbjct: 527 LSPEGSGNL--AVIGGVAVGVVLLLVLAGVGFFIHRRRKNQR 566 >gi|125987593 leukocyte immunoglobulin-like receptor, subfamily B, member 5 isoform 3 [Homo sapiens] Length = 491 Score = 30.0 bits (66), Expect = 0.42 Identities = 12/30 (40%), Positives = 22/30 (73%) Query: 35 IGVISGIAVFVVILFIGILFIILRKRQGSR 64 +GV++G++V V+L +LF++LR R S+ Sbjct: 358 LGVVTGVSVAFVLLLFLLLFLLLRHRHQSK 387 >gi|125987591 leukocyte immunoglobulin-like receptor, subfamily B, member 5 isoform 1 [Homo sapiens] Length = 591 Score = 30.0 bits (66), Expect = 0.42 Identities = 12/30 (40%), Positives = 22/30 (73%) Query: 35 IGVISGIAVFVVILFIGILFIILRKRQGSR 64 +GV++G++V V+L +LF++LR R S+ Sbjct: 458 LGVVTGVSVAFVLLLFLLLFLLLRHRHQSK 487 >gi|5803070 leukocyte immunoglobulin-like receptor, subfamily B, member 5 isoform 2 [Homo sapiens] Length = 590 Score = 30.0 bits (66), Expect = 0.42 Identities = 12/30 (40%), Positives = 22/30 (73%) Query: 35 IGVISGIAVFVVILFIGILFIILRKRQGSR 64 +GV++G++V V+L +LF++LR R S+ Sbjct: 457 LGVVTGVSVAFVLLLFLLLFLLLRHRHQSK 486 >gi|4557535 solute carrier family 26, member 3 [Homo sapiens] Length = 764 Score = 28.5 bits (62), Expect = 1.2 Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 17 TAVLQGRLLQPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGH 69 TA+ + + + + T + G+I I V +V+L IG L L+K + A+G+ Sbjct: 395 TALSRSAVQESTGGKTQIAGLIGAIIVLIVVLAIGFLLAPLQKSVLAALALGN 447 >gi|86793109 complement receptor 1 isoform S precursor [Homo sapiens] Length = 2489 Score = 28.1 bits (61), Expect = 1.6 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%) Query: 33 LVIGVISGIAVFVVILFIGILFIILRKRQGS 63 L++G +SG +F ++L I + +IIL+ R+G+ Sbjct: 2423 LIVGTLSG-TIFFILLIIFLSWIILKHRKGN 2452 >gi|86793036 complement receptor 1 isoform F precursor [Homo sapiens] Length = 2039 Score = 28.1 bits (61), Expect = 1.6 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%) Query: 33 LVIGVISGIAVFVVILFIGILFIILRKRQGS 63 L++G +SG +F ++L I + +IIL+ R+G+ Sbjct: 1973 LIVGTLSG-TIFFILLIIFLSWIILKHRKGN 2002 >gi|108773799 ganglioside-induced differentiation-associated protein 1 isoform b [Homo sapiens] Length = 290 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 9 LLLLMLLQTAVLQGRLLQPSPSGT-LVIGVISGIAVFVVILF---IGILFIILRKR 60 +L+ +L TA + P GT LV+G+++G+ F +LF +G + + R R Sbjct: 231 ILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPR 286 >gi|108773797 ganglioside-induced differentiation-associated protein 1 isoform a [Homo sapiens] Length = 358 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 9 LLLLMLLQTAVLQGRLLQPSPSGT-LVIGVISGIAVFVVILF---IGILFIILRKR 60 +L+ +L TA + P GT LV+G+++G+ F +LF +G + + R R Sbjct: 299 ILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPR 354 >gi|167857792 programmed cell death 1 precursor [Homo sapiens] Length = 288 Score = 27.7 bits (60), Expect = 2.1 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Query: 27 PSPSG---TLVIGVISGIAVFVVILFIGILFIILRKRQGSRGA 66 P P+G TLV+GV+ G+ +V+L + I R +G+ GA Sbjct: 160 PRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGA 202 >gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] Length = 1159 Score = 27.7 bits (60), Expect = 2.1 Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 3 PRARPALLLLMLLQTAVLQGRLLQPSPSG 31 PR+RP LLLL+LL GR +P G Sbjct: 31 PRSRPLLLLLLLLGACGAAGRSPEPGRLG 59 >gi|10092665 sushi domain containing 2 [Homo sapiens] Length = 822 Score = 27.7 bits (60), Expect = 2.1 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Query: 26 QPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMG 68 QP S +++G+I G V+ + +++++LR+R+G+ G Sbjct: 779 QPGRSYAVLLGIIFG--GLAVVAAVALVYVLLRRRKGNTHVWG 819 >gi|239753040 PREDICTED: hypothetical protein XP_002345331 [Homo sapiens] Length = 244 Score = 26.9 bits (58), Expect = 3.5 Identities = 13/25 (52%), Positives = 19/25 (76%) Query: 5 ARPALLLLMLLQTAVLQGRLLQPSP 29 A+PAL+LL+L A+L+ +LL P P Sbjct: 81 AQPALVLLLLRLLALLKLKLLPPPP 105 >gi|239747598 PREDICTED: hypothetical protein XP_002347782 [Homo sapiens] Length = 244 Score = 26.9 bits (58), Expect = 3.5 Identities = 13/25 (52%), Positives = 19/25 (76%) Query: 5 ARPALLLLMLLQTAVLQGRLLQPSP 29 A+PAL+LL+L A+L+ +LL P P Sbjct: 81 AQPALVLLLLRLLALLKLKLLPPPP 105 >gi|239741463 PREDICTED: hypothetical protein XP_002342210 [Homo sapiens] Length = 244 Score = 26.9 bits (58), Expect = 3.5 Identities = 13/25 (52%), Positives = 19/25 (76%) Query: 5 ARPALLLLMLLQTAVLQGRLLQPSP 29 A+PAL+LL+L A+L+ +LL P P Sbjct: 81 AQPALVLLLLRLLALLKLKLLPPPP 105 >gi|157419150 protein tyrosine phosphatase, receptor type, M isoform 2 precursor [Homo sapiens] Length = 1452 Score = 26.9 bits (58), Expect = 3.5 Identities = 10/27 (37%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Query: 34 VIGVISGIAVFVVILFIGILFIILRKR 60 + GVI+GI +FV+I F+G++ ++ +++ Sbjct: 743 IAGVIAGILLFVII-FLGVVLVMKKRK 768 >gi|157419152 protein tyrosine phosphatase, receptor type, M isoform 1 precursor [Homo sapiens] Length = 1465 Score = 26.9 bits (58), Expect = 3.5 Identities = 10/27 (37%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Query: 34 VIGVISGIAVFVVILFIGILFIILRKR 60 + GVI+GI +FV+I F+G++ ++ +++ Sbjct: 743 IAGVIAGILLFVII-FLGVVLVMKKRK 768 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.332 0.149 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,620,215 Number of Sequences: 37866 Number of extensions: 87754 Number of successful extensions: 479 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 30 Number of HSP's that attempted gapping in prelim test: 438 Number of HSP's gapped (non-prelim): 70 length of query: 76 length of database: 18,247,518 effective HSP length: 48 effective length of query: 28 effective length of database: 16,429,950 effective search space: 460038600 effective search space used: 460038600 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.