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Search of human proteins with 209529683
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens] 288 9e-79
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 201 1e-52
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 201 1e-52
gi|5902054 ring finger protein 5 [Homo sapiens] 97 5e-21
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 44 4e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 44 4e-05
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 43 7e-05
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 43 7e-05
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 40 6e-04
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 40 6e-04
gi|21071052 helicase-like transcription factor [Homo sapiens] 40 8e-04
gi|21071054 helicase-like transcription factor [Homo sapiens] 40 8e-04
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 40 8e-04
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 39 0.001
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 39 0.001
gi|47716512 mex-3 homolog B [Homo sapiens] 38 0.002
gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo sap... 37 0.005
gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo sap... 37 0.005
gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo ... 37 0.005
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 37 0.005
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 37 0.005
gi|225903455 tripartite motif-containing 77 [Homo sapiens] 37 0.005
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 37 0.005
gi|157743261 tripartite motif-containing 75 [Homo sapiens] 37 0.005
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 37 0.006
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 36 0.008
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 36 0.008
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 36 0.008
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 36 0.008
gi|34452681 ring finger protein 10 [Homo sapiens] 36 0.008
>gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens]
Length = 136
Score = 288 bits (737), Expect = 9e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 61 PCLHQGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSR 120
PCLHQGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSR
Sbjct: 61 PCLHQGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSR 120
Query: 121 LFLFVALVIMFWLLIA 136
LFLFVALVIMFWLLIA
Sbjct: 121 LFLFVALVIMFWLLIA 136
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 201 bits (512), Expect = 1e-52
Identities = 117/192 (60%), Positives = 120/192 (62%), Gaps = 56/192 (29%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE---------------------- 38
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 39 ---------------CNIC-LDTAKDAVISLCGHLFCW------------------PCLH 64
C +C ++D VI L G P
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
Query: 65 QGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 124
GFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
Sbjct: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
Query: 125 VALVIMFWLLIA 136
VALVIMFWLLIA
Sbjct: 181 VALVIMFWLLIA 192
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 201 bits (512), Expect = 1e-52
Identities = 117/192 (60%), Positives = 120/192 (62%), Gaps = 56/192 (29%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE---------------------- 38
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 39 ---------------CNIC-LDTAKDAVISLCGHLFCW------------------PCLH 64
C +C ++D VI L G P
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
Query: 65 QGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 124
GFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
Sbjct: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
Query: 125 VALVIMFWLLIA 136
VALVIMFWLLIA
Sbjct: 181 VALVIMFWLLIA 192
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 96.7 bits (239), Expect = 5e-21
Identities = 61/173 (35%), Positives = 78/173 (45%), Gaps = 59/173 (34%)
Query: 18 GGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQGFQG-------- 69
GGP G + E GG +TFECNICL+TA++AV+S+CGHL+CWPCLHQ +
Sbjct: 9 GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
Query: 70 --------------FGFGD------------------------GGFQ---------MSFG 82
+G G GGFQ SFG
Sbjct: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFG 125
Query: 83 IGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLL 134
+GAFPFG F T FN ++ R V + + LFLF+A+ FWLL
Sbjct: 126 VGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLL 178
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 43.9 bits (102), Expect = 4e-05
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 6 PSASASPENSSAGGPSGSS-------NGAGESGGQDST-FECNICLDTAKDAVISLCGHL 57
PSA +SS G S NG S S F C IC D ++A ++ CGH
Sbjct: 95 PSAGVGGSSSSLGSGSRKRPLLAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHS 154
Query: 58 FCWPCLHQGFQ 68
FC+ C+HQ +
Sbjct: 155 FCYKCIHQSLE 165
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 43.9 bits (102), Expect = 4e-05
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 6 PSASASPENSSAGGPSGSS-------NGAGESGGQDST-FECNICLDTAKDAVISLCGHL 57
PSA +SS G S NG S S F C IC D ++A ++ CGH
Sbjct: 95 PSAGVGGSSSSLGSGSRKRPLLAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHS 154
Query: 58 FCWPCLHQGFQ 68
FC+ C+HQ +
Sbjct: 155 FCYKCIHQSLE 165
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 43.1 bits (100), Expect = 7e-05
Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 6 PSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQ 65
P A+ SP AGG G + G G A + CW +Q
Sbjct: 29 PPAARSPRGPRAGGGGGDAGGGG--------------------APVRRARGGGCWARAYQ 68
Query: 66 GFQGFGFGDGG-FQMSFGIGAFPFGIF-ATAFNINDGRPPPAVPGTPQYVDEQFLSRLF 122
+ FG G+GG Q+S G GA P F A+A + R PA PG P + F S F
Sbjct: 69 DARCFGRGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASF 127
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 43.1 bits (100), Expect = 7e-05
Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 6 PSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQ 65
P A+ SP AGG G + G G A + CW +Q
Sbjct: 29 PPAARSPRGPRAGGGGGDAGGGG--------------------APVRRARGGGCWARAYQ 68
Query: 66 GFQGFGFGDGG-FQMSFGIGAFPFGIF-ATAFNINDGRPPPAVPGTPQYVDEQFLSRLF 122
+ FG G+GG Q+S G GA P F A+A + R PA PG P + F S F
Sbjct: 69 DARCFGRGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASF 127
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 40.0 bits (92), Expect = 6e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 7 SASASPENSSAGGPSGSSNGAG----ESGGQD--------STFECNICLDTAKDAVISLC 54
S SA ++ S GG + + N + E G D S +EC ICL ++AV + C
Sbjct: 26 SCSAVTKDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPC 85
Query: 55 GHLFCWPCLHQGFQGFG 71
GH FC C+ + + G
Sbjct: 86 GHRFCKACIIKSIRDAG 102
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 40.0 bits (92), Expect = 6e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 7 SASASPENSSAGGPSGSSNGAG----ESGGQD--------STFECNICLDTAKDAVISLC 54
S SA ++ S GG + + N + E G D S +EC ICL ++AV + C
Sbjct: 26 SCSAVTKDDSVGGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPC 85
Query: 55 GHLFCWPCLHQGFQGFG 71
GH FC C+ + + G
Sbjct: 86 GHRFCKACIIKSIRDAG 102
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 8e-04
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQGFQ 68
S G D EC ICLD+ VI+ C H+FC PC+ Q Q
Sbjct: 753 SSGSDE--ECAICLDSLTVPVITHCAHVFCKPCICQVIQ 789
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 39.7 bits (91), Expect = 8e-04
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQGFQ 68
S G D EC ICLD+ VI+ C H+FC PC+ Q Q
Sbjct: 753 SSGSDE--ECAICLDSLTVPVITHCAHVFCKPCICQVIQ 789
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 39.7 bits (91), Expect = 8e-04
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 37 FECNICLDTAKDAVISLCGHLFCWPCL-----HQGFQGFGFGDGGFQMSFGIGAFPFGI- 90
F C ICL+ ++ V CGH FC CL H+G G G G + FP G+
Sbjct: 7 FSCPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFPDGLQ 66
Query: 91 ------FATAFNINDGRPPPAVPG 108
+ + G P + PG
Sbjct: 67 LRKNHTLSELLQLRQGSGPGSGPG 90
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 38.9 bits (89), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCL 63
DSTFE C IC ++ KD I CGHL C CL
Sbjct: 299 DSTFELCKICAESNKDVKIEPCGHLLCSCCL 329
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 38.9 bits (89), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCL 63
DSTFE C IC ++ KD I CGHL C CL
Sbjct: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCL 375
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 7 SASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGH-LFCWPCLHQ 65
++ +S +SS+ S SS+G G +D C++C ++ A + CGH LFC C ++
Sbjct: 490 TSGSSSSSSSSSSSSSSSSGLRRKGSRD----CSVCFESEVIAALVPCGHNLFCMECANR 545
>gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCL 63
S C+IC D D V CGH FC PCL
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCL 39
>gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCL 63
S C+IC D D V CGH FC PCL
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCL 39
>gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo
sapiens]
Length = 450
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCL 63
S C+IC D D V CGH FC PCL
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCL 39
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 37.0 bits (84), Expect = 0.005
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCL 63
C +CL+ + + CGHLFCW C+
Sbjct: 293 CTLCLEERRHPTATPCGHLFCWECI 317
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 37.0 bits (84), Expect = 0.005
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCL 63
C +CL+ + + CGHLFCW C+
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECI 297
>gi|225903455 tripartite motif-containing 77 [Homo sapiens]
Length = 450
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCL 63
S C+IC D D V CGH FC PCL
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCL 39
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQ 65
C IC ++ K+AV + CGHLFC CL Q
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQ 40
>gi|157743261 tripartite motif-containing 75 [Homo sapiens]
Length = 468
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 32 GQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQGF 67
G + +C+ICLD D V CGH FC C+ Q +
Sbjct: 9 GLQAEAKCSICLDYLSDPVTIECGHNFCRSCIQQSW 44
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 36.6 bits (83), Expect = 0.006
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQGFQGFGFG 73
STF+ C IC + KD I CGHL C CL + G G
Sbjct: 376 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 415
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 36.2 bits (82), Expect = 0.008
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCL 63
STF+ C IC + KD I CGHL C CL
Sbjct: 368 STFQLCKICAENDKDVKIEPCGHLMCTSCL 397
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 36.2 bits (82), Expect = 0.008
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQGF 67
C ICLD +D V CGH FC CLH+ +
Sbjct: 12 CPICLDYFQDPVSIECGHNFCRGCLHRNW 40
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 36.2 bits (82), Expect = 0.008
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQGF 67
C ICLD +D V CGH FC CLH+ +
Sbjct: 12 CPICLDYFQDPVSIECGHNFCRGCLHRNW 40
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 36.2 bits (82), Expect = 0.008
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQD----STFECNICLDTAKDAVISL-CG 55
+++ GP +SA P ++ G GAG Q S FEC +C D ++ G
Sbjct: 38 ISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAG 97
Query: 56 HLFCWPC 62
HL C C
Sbjct: 98 HLVCNQC 104
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 36.2 bits (82), Expect = 0.008
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCL 63
C ICL A I+ CGH+FCW C+
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACI 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,557,896
Number of Sequences: 37866
Number of extensions: 321467
Number of successful extensions: 3225
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2694
Number of HSP's gapped (non-prelim): 562
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.