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Search of human proteins with 19387844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19387844 muscleblind-like 3 isoform G [Homo sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19387844 muscleblind-like 3 isoform G [Homo sapiens] 739 0.0
gi|30315649 muscleblind-like 3 isoform R [Homo sapiens] 644 0.0
gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens] 514 e-146
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 480 e-136
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 454 e-128
gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens] 447 e-126
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 445 e-125
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 429 e-120
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 408 e-114
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 382 e-106
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 381 e-106
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 50 4e-06
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 50 4e-06
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 40 0.004
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 40 0.004
gi|193788659 cleavage and polyadenylation specific factor 4-like... 39 0.007
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 38 0.016
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 38 0.016
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 38 0.016
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 37 0.027
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 36 0.046
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 35 0.078
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 35 0.10
gi|189181750 human immunodeficiency virus type I enhancer bindin... 35 0.10
gi|116089331 human immunodeficiency virus type I enhancer bindin... 35 0.10
gi|4557317 annexin A11 [Homo sapiens] 35 0.13
gi|22165433 annexin A11 [Homo sapiens] 35 0.13
gi|22165431 annexin A11 [Homo sapiens] 35 0.13
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 35 0.13
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 35 0.13
>gi|19387844 muscleblind-like 3 isoform G [Homo sapiens]
Length = 354
Score = 739 bits (1908), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG 60
MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG
Sbjct: 1 MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG 60
Query: 61 RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT 120
RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT
Sbjct: 61 RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT 120
Query: 121 PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC 180
PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC
Sbjct: 121 PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC 180
Query: 181 REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA 240
REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA
Sbjct: 181 REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA 240
Query: 241 RLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLP 300
RLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLP
Sbjct: 241 RLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLP 300
Query: 301 QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQLKF 354
QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQLKF
Sbjct: 301 QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQLKF 354
>gi|30315649 muscleblind-like 3 isoform R [Homo sapiens]
Length = 334
Score = 644 bits (1662), Expect = 0.0
Identities = 316/352 (89%), Positives = 317/352 (90%), Gaps = 35/352 (9%)
Query: 1 MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG 60
MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG
Sbjct: 1 MTAVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKG 60
Query: 61 RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT 120
RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT
Sbjct: 61 RCTRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMT 120
Query: 121 PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC 180
PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC
Sbjct: 121 PSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVC 180
Query: 181 REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA 240
REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA
Sbjct: 181 REFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQA 240
Query: 241 RLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLP 300
RLKAAHHQMNHSAASAM ALTNLQLP
Sbjct: 241 RLKAAHHQMNHSAASAM-----------------------------------ALTNLQLP 265
Query: 301 QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQL 352
QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQ+
Sbjct: 266 QPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQI 317
>gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens]
Length = 367
Score = 514 bits (1323), Expect = e-146
Identities = 245/363 (67%), Positives = 289/363 (79%), Gaps = 13/363 (3%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
A+NVA +RDTKWLTLEVCR+FQRGTCSR+D +CKFAHPP+ C VENGRV+ACFDSLKGRC
Sbjct: 2 ALNVAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPS 122
+RENCKYLHPP HLKTQLEINGRNNLIQQKTAAAM AQQMQ M + + +FP+ P+
Sbjct: 62 SRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHPVPTFPVGPA 121
Query: 123 IPANPPMAFNPYIP--HPGMGLVPAELVPNTPVLIPGNPPLAMPGAVG-PKLMRSDKLEV 179
I N ++F PY+ PG+GLVP E++P TPV++PG+PP+ +PG+ KL+R+DKLEV
Sbjct: 122 IGTNTAISFAPYLAPVTPGVGLVPTEILPTTPVIVPGSPPVTVPGSTATQKLLRTDKLEV 181
Query: 180 CREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQ 239
CREFQRGNC RGE DCR+AHP D++MI+ SDNTVT+CMDYIKGRC REKCKYFHPPAHLQ
Sbjct: 182 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 241
Query: 240 ARLKAAHHQMNH---------SAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHC 290
A++KAA HQ N +AA+ MA PG L +PKR ALEK NG + VFNP+V H
Sbjct: 242 AKIKAAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPKRQALEKSNGTSAVFNPSVLHY 301
Query: 291 QQALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTG 349
QQALT+ QL Q AFIP G +LCM PA++IVPMMH AT TVSAATTPATSVPFAA T
Sbjct: 302 QQALTSAQLQQHAAFIPTGSVLCMTPATSIVPMMHSATSATVSAATTPATSVPFAATATA 361
Query: 350 NQL 352
NQ+
Sbjct: 362 NQI 364
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 480 bits (1235), Expect = e-136
Identities = 238/365 (65%), Positives = 280/365 (76%), Gaps = 16/365 (4%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 236 AHLQARLKAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVF 288
AHLQA++KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 289 HCQQALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPT 347
QQAL N+QL Q AF+P G ILCM PA+++VPM+HGATP TVSAATT ATSVPFAA
Sbjct: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
Query: 348 TGNQL 352
T NQ+
Sbjct: 361 TANQI 365
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 454 bits (1169), Expect = e-128
Identities = 231/365 (63%), Positives = 270/365 (73%), Gaps = 28/365 (7%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 236 AHLQARLKAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVF 288
AHLQA++KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 289 HCQQALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPT 347
QQAL N+QL Q AF+P VPM+HGATP TVSAATT ATSVPFAA
Sbjct: 301 QYQQALANMQLQQHTAFLPP------------VPMVHGATPATVSAATTSATSVPFAATA 348
Query: 348 TGNQL 352
T NQ+
Sbjct: 349 TANQI 353
>gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens]
Length = 361
Score = 447 bits (1150), Expect = e-126
Identities = 212/317 (66%), Positives = 252/317 (79%), Gaps = 13/317 (4%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
A+NVA +RDTKWLTLEVCR+FQRGTCSR+D +CKFAHPP+ C VENGRV+ACFDSLKGRC
Sbjct: 2 ALNVAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPS 122
+RENCKYLHPP HLKTQLEINGRNNLIQQKTAAAM AQQMQ M + + +FP+ P+
Sbjct: 62 SRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHPVPTFPVGPA 121
Query: 123 IPANPPMAFNPYIP--HPGMGLVPAELVPNTPVLIPGNPPLAMPGAVG-PKLMRSDKLEV 179
I N ++F PY+ PG+GLVP E++P TPV++PG+PP+ +PG+ KL+R+DKLEV
Sbjct: 122 IGTNTAISFAPYLAPVTPGVGLVPTEILPTTPVIVPGSPPVTVPGSTATQKLLRTDKLEV 181
Query: 180 CREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQ 239
CREFQRGNC RGE DCR+AHP D++MI+ SDNTVT+CMDYIKGRC REKCKYFHPPAHLQ
Sbjct: 182 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 241
Query: 240 ARLKAAHHQMNH---------SAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHC 290
A++KAA HQ N +AA+ MA PG L +PKR ALEK NG + VFNP+V H
Sbjct: 242 AKIKAAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPKRQALEKSNGTSAVFNPSVLHY 301
Query: 291 QQALTNLQLPQ-PAFIP 306
QQALT+ QL Q AFIP
Sbjct: 302 QQALTSAQLQQHAAFIP 318
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 445 bits (1144), Expect = e-125
Identities = 230/383 (60%), Positives = 269/383 (70%), Gaps = 46/383 (12%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 236 AHLQARLKAAHHQMNHSAASAMA-------------------------LQPGTLQLIPKR 270
AHLQA++KAA +Q+N +AA+ A + L +PKR
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMTQSAVKSLKRPLEATFDLGIPQAVLPPLPKR 300
Query: 271 SALEKPNGATPVFNPTVFHCQQALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPT 329
ALEK NGAT VFN +F QQAL N+QL Q AF+P VPM+HGATP
Sbjct: 301 PALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPP------------VPMVHGATPA 348
Query: 330 TVSAATTPATSVPFAAPTTGNQL 352
TVSAATT ATSVPFAA T NQ+
Sbjct: 349 TVSAATTSATSVPFAATATANQI 371
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 429 bits (1103), Expect = e-120
Identities = 212/332 (63%), Positives = 252/332 (75%), Gaps = 16/332 (4%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 236 AHLQARLKAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVF 288
AHLQA++KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 289 HCQQALTNLQLPQ-PAFIPAGPILCMAPASNI 319
QQAL N+QL Q AF+P G ILCM PA+++
Sbjct: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSV 332
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 408 bits (1048), Expect = e-114
Identities = 214/358 (59%), Positives = 242/358 (67%), Gaps = 70/358 (19%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPS 122
+RENCKYLHPPPHLKTQLEINGRNNLIQQK A M AQQMQL NA M
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKNMA-MLAQQMQLA--NAMM----------- 107
Query: 123 IPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVCRE 182
PG L P VCRE
Sbjct: 108 ---------------PGAPLQPV---------------------------------VCRE 119
Query: 183 FQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQARL 242
+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPPAHLQA++
Sbjct: 120 YQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKI 179
Query: 243 KAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALT 295
KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F QQAL
Sbjct: 180 KAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALA 239
Query: 296 NLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQL 352
N+QL Q AF+P G ILCM PA+++VPM+HGATP TVSAATT ATSVPFAA T NQ+
Sbjct: 240 NMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATATANQI 297
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 382 bits (982), Expect = e-106
Identities = 207/358 (57%), Positives = 232/358 (64%), Gaps = 82/358 (22%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPS 122
+RENCKYLHPPPHLKTQLEINGRNNLIQQK A M AQQMQL NA M
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKNMA-MLAQQMQLA--NAMM----------- 107
Query: 123 IPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVCRE 182
PG L P VCRE
Sbjct: 108 ---------------PGAPLQPV---------------------------------VCRE 119
Query: 183 FQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAHLQARL 242
+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPPAHLQA++
Sbjct: 120 YQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKI 179
Query: 243 KAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALT 295
KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F QQAL
Sbjct: 180 KAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALA 239
Query: 296 NLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQL 352
N+QL Q AF+P VPM+HGATP TVSAATT ATSVPFAA T NQ+
Sbjct: 240 NMQLQQHTAFLPP------------VPMVHGATPATVSAATTSATSVPFAATATANQI 285
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 381 bits (979), Expect = e-106
Identities = 194/334 (58%), Positives = 234/334 (70%), Gaps = 22/334 (6%)
Query: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
Query: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 236 AHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALT 295
AHLQA++KAA +Q+N +AA+ A + P + L +P P H Q
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAA--MFPWCTVLRQP------LCPQQQHLPQVFP 292
Query: 296 NLQLPQP------AFIPAGPILCMAPASNIVPMM 323
+LQ PQP A G C A A ++P++
Sbjct: 293 SLQQPQPTSPILDASTLLGATSCPAAAGKMIPII 326
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 179 VCREFQRGNCTRGENDCRYAHP--TDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPA 236
+CR+F R C RG+ CRY HP ++ S + S N C D+ CSR C++ H
Sbjct: 41 ICRDFLRNVCKRGKR-CRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSK 99
Query: 237 HLQARLKAAHH---QMNHSAASAMALQPGTL 264
+ K ++ A+ + L P L
Sbjct: 100 EDEDGYKKTGELPPRLRQKVAAGLGLSPADL 130
Score = 40.8 bits (94), Expect = 0.002
Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 73/186 (39%)
Query: 19 VCREFQRGTCSRADADCKFAHPPRV----CHVENGRVVACFDSLKGRCTRENCKYLHPPP 74
+CR+F R C R C++ HP V + C D C+R NC+++H
Sbjct: 41 ICRDFLRNVCKRGKR-CRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSK 99
Query: 75 HLKTQLEINGR-NNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNP 133
+ + G ++QK AA
Sbjct: 100 EDEDGYKKTGELPPRLRQKVAA-------------------------------------- 121
Query: 134 YIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVCREFQRGNCTRGEN 193
G+GL PA+L PN +P +CR+F +G+C RG
Sbjct: 122 -----GLGLSPADL-PNGKEEVP----------------------ICRDFLKGDCQRGAK 153
Query: 194 DCRYAH 199
C++ H
Sbjct: 154 -CKFRH 158
Score = 28.9 bits (63), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 213 VTICMDYIKGRCSR-EKCKYFH 233
V IC D++KG C R KCK+ H
Sbjct: 137 VPICRDFLKGDCQRGAKCKFRH 158
Score = 28.9 bits (63), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 19 VCREFQRGTCSRADADCKFAHPPR 42
+CR+F +G C R A CKF H R
Sbjct: 139 ICRDFLKGDCQRG-AKCKFRHLQR 161
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRCTRENCKYLH 71
VC F RGTC + D C F+H HV ++ C LKG C+ NC Y H
Sbjct: 699 VCTRFVRGTCKKTDGTCPFSH-----HVSKEKMPVCSYFLKGICSNSNCPYSH 746
Score = 44.3 bits (103), Expect = 2e-04
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 169 PKLMRSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREK 228
P + +K+ VC F RG C + + C ++H S + +C ++KG CS
Sbjct: 689 PYIHDPEKVAVCTRFVRGTCKKTDGTCPFSH-------HVSKEKMPVCSYFLKGICSNSN 741
Query: 229 CKYFH 233
C Y H
Sbjct: 742 CPYSH 746
Score = 32.7 bits (73), Expect = 0.51
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 35/176 (19%)
Query: 174 SDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYI-KGRCSR-EKCKY 231
S K EVC +F +G C G C+ H +C D+ +G C R +C+
Sbjct: 750 SRKAEVCSDFLKGYCPLGAK-CKKKH-------------TLLCPDFARRGACPRGAQCQL 795
Query: 232 FHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQ 291
H +R A S A+A + + K SA ++P TP
Sbjct: 796 LHRTQKRHSRRAATSPAPGPSDATARS-RVSASHGPRKPSASQRPTRQTP--------SS 846
Query: 292 QALTNLQLPQPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPT 347
ALT + P P G +P+S+ ++ S++++P S+ AP+
Sbjct: 847 AALTAAAVAAPPHCPGG---SASPSSS-------KASSSSSSSSSPPASLDHEAPS 892
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 23/242 (9%)
Query: 118 PMTPSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLI--PGNPPLAMPGAVGPKLMRSD 175
PM P PPM P++ P P +P P ++ PG PP+ PG P L ++
Sbjct: 78 PMPPPGGIPPPMG-PPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGT--PALPPTE 134
Query: 176 KLEVCREFQRGNC---TRGENDCRYAHPTDASMIEASDNTVTICMD-YIKGRCSREKCKY 231
++ V + G + + P +I+ S+ T + ++ + +
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQ 194
Query: 232 FHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQ 291
A QA+ +A + A A A Q + A +
Sbjct: 195 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQV----------- 243
Query: 292 QALTNLQLPQPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSV--PFAAPTTG 349
QA Q+ A + A +PA + +TP++ ++ TT ATSV + PTT
Sbjct: 244 QAQVQAQVQAQA-VGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQ 302
Query: 350 NQ 351
+Q
Sbjct: 303 DQ 304
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 23/242 (9%)
Query: 118 PMTPSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLI--PGNPPLAMPGAVGPKLMRSD 175
PM P PPM P++ P P +P P ++ PG PP+ PG P L ++
Sbjct: 78 PMPPPGGIPPPMG-PPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGT--PALPPTE 134
Query: 176 KLEVCREFQRGNC---TRGENDCRYAHPTDASMIEASDNTVTICMD-YIKGRCSREKCKY 231
++ V + G + + P +I+ S+ T + ++ + +
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQ 194
Query: 232 FHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQ 291
A QA+ +A + A A A Q + A +
Sbjct: 195 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQV----------- 243
Query: 292 QALTNLQLPQPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSV--PFAAPTTG 349
QA Q+ A + A +PA + +TP++ ++ TT ATSV + PTT
Sbjct: 244 QAQVQAQVQAQA-VGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQ 302
Query: 350 NQ 351
+Q
Sbjct: 303 DQ 304
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 38.9 bits (89), Expect = 0.007
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVAC-FDSLKGRCTRENCKYLHPPPHLK 77
VC+ + RG C + D CKF H + R+ C F S G C+ + C +LH P K
Sbjct: 67 VCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
Query: 78 TQ 79
+Q
Sbjct: 121 SQ 122
Score = 38.1 bits (87), Expect = 0.012
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 173 RSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIK-GRCSREKCKY 231
R +K+ VC+ + RG C +G++ C++ H D + + C Y K G CS ++C +
Sbjct: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
Query: 232 FH 233
H
Sbjct: 113 LH 114
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 81 EINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNPYIPHPGM 140
+++ R L++QKT + +Q + S S P P P + P + PG+
Sbjct: 89 DMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQ-PVQPQQGYIPPMAQPGL 147
Query: 141 GLVPAE---------LVPNTPVLIPGNPPLAMPG 165
VP L+P P L+PG PP+ MPG
Sbjct: 148 PPVPGAPGMPPGIPPLMPGVPPLMPGMPPV-MPG 180
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 81 EINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNPYIPHPGM 140
+++ R L++QKT + +Q + S S P P P + P + PG+
Sbjct: 89 DMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQ-PVQPQQGYIPPMAQPGL 147
Query: 141 GLVPAE---------LVPNTPVLIPGNPPLAMPG 165
VP L+P P L+PG PP+ MPG
Sbjct: 148 PPVPGAPGMPPGIPPLMPGVPPLMPGMPPV-MPG 180
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 37.7 bits (86), Expect = 0.016
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 81 EINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNPYIPHPGM 140
+++ R L++QKT + +Q + S S P P P + P + PG+
Sbjct: 89 DMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQ-PVQPQQGYIPPMAQPGL 147
Query: 141 GLVPAE---------LVPNTPVLIPGNPPLAMPG 165
VP L+P P L+PG PP+ MPG
Sbjct: 148 PPVPGAPGMPPGIPPLMPGVPPLMPGMPPV-MPG 180
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 37.0 bits (84), Expect = 0.027
Identities = 51/213 (23%), Positives = 78/213 (36%), Gaps = 31/213 (14%)
Query: 127 PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGAVGPKLMRSDKLEVCREF-QR 185
PP F P P G L P+ P P K E+CR F +
Sbjct: 72 PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRY----------------KTELCRTFSES 115
Query: 186 GNCTRGENDCRYAHPTDASMIEASDN---TVTICMD-YIKGRCS-REKCKYFHPPAHLQA 240
G C G C++AH + +A+ + +C Y++GRC +C + H P+
Sbjct: 116 GRCRYGAK-CQFAHGL-GELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE--- 170
Query: 241 RLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLP 300
L A H + + + P + P L P+ ++ F+P+ +L L
Sbjct: 171 DLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPS--SSPPPPGDLPLS 228
Query: 301 QPAF--IPAGPILCMAPASNIVPMMHGATPTTV 331
AF P P+ P P ATP +V
Sbjct: 229 PSAFSAAPGTPLARRDPTPVCCPSCRRATPISV 261
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 36.2 bits (82), Expect = 0.046
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 178 EVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSR-EKCKYFH 233
++C+ F G C +G+ C++ H DA + + + IC Y++G C++ E C Y H
Sbjct: 276 QICKYFLEGRCIKGD-QCKFDH--DAELEKRKE----ICKFYLQGYCTKGENCIYMH 325
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 35.4 bits (80), Expect = 0.078
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 124 PANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGN--PPLAMPGAVGPKLMRS------D 175
P+ A + +PH G P + P L G P A G P + S
Sbjct: 37 PSGESAAPDSALPHAARGWAPFPVAPVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
Query: 176 KLEVCREFQRGNCTRGENDCRYAH 199
K +CR + G C GEN CRY+H
Sbjct: 97 KQIICRYYIHGQCKEGEN-CRYSH 119
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 35.0 bits (79), Expect = 0.10
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 179 VCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSR-EKCKYFH 233
+C+ F G CT G++ C ++H D + + + +C YI G C+R E C Y H
Sbjct: 395 ICKYFVEGRCTWGDH-CNFSH--DIELPKKRE----LCKFYITGFCARAENCPYMH 443
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 35.0 bits (79), Expect = 0.10
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 70 LHPPPHLKTQLEINGRNNLIQQKTAAA--MFAQQMQLMLQNAQMSSLGSFPMTPSIPANP 127
LH P+L + + +L+Q + + F+ Q L ++ S P+ PS+ P
Sbjct: 1133 LHEKPYLPPPVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMP---PLPPSLFQAP 1189
Query: 128 PMAFNPYIPHPGMGLVPAELVPNTPVLIP-GNPPLAMP 164
P+ P + HPG +P +L+P+ P IP PP +P
Sbjct: 1190 PLPLQPTVLHPGQLHLP-QLMPH-PANIPFRQPPSFLP 1225
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 35.0 bits (79), Expect = 0.10
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 70 LHPPPHLKTQLEINGRNNLIQQKTAAA--MFAQQMQLMLQNAQMSSLGSFPMTPSIPANP 127
LH P+L + + +L+Q + + F+ Q L ++ S P+ PS+ P
Sbjct: 1133 LHEKPYLPPPVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMP---PLPPSLFQAP 1189
Query: 128 PMAFNPYIPHPGMGLVPAELVPNTPVLIP-GNPPLAMP 164
P+ P + HPG +P +L+P+ P IP PP +P
Sbjct: 1190 PLPLQPTVLHPGQLHLP-QLMPH-PANIPFRQPPSFLP 1225
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 34.7 bits (78), Expect = 0.13
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 117 FPMTPSIPANPPMAFNPYIPHPGMGLVPAELVP------------NTPVLIPGNPPLAMP 164
+ M P NPP Y P+PG VP + +P PV PG PP+ +P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAP-VPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLP 161
Query: 165 GAVGP 169
G P
Sbjct: 162 GQQQP 166
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 34.7 bits (78), Expect = 0.13
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 117 FPMTPSIPANPPMAFNPYIPHPGMGLVPAELVP------------NTPVLIPGNPPLAMP 164
+ M P NPP Y P+PG VP + +P PV PG PP+ +P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAP-VPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLP 161
Query: 165 GAVGP 169
G P
Sbjct: 162 GQQQP 166
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 34.7 bits (78), Expect = 0.13
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 117 FPMTPSIPANPPMAFNPYIPHPGMGLVPAELVP------------NTPVLIPGNPPLAMP 164
+ M P NPP Y P+PG VP + +P PV PG PP+ +P
Sbjct: 103 YGMYPPPGGNPPSRMPSYPPYPGAP-VPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLP 161
Query: 165 GAVGP 169
G P
Sbjct: 162 GQQQP 166
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 34.7 bits (78), Expect = 0.13
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVAC-FDSLKGRCTRENCKYLHPPPHLK 77
VC+ + RG C + D C+F H + ++ C F S G C+ + C +LH P K
Sbjct: 67 VCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 175 DKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIK-GRCSREKCKYFH 233
+K VC+ + RG C +G+ C + H D + + C Y K G CS ++C + H
Sbjct: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 34.7 bits (78), Expect = 0.13
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVAC-FDSLKGRCTRENCKYLHPPPHLK 77
VC+ + RG C + D C+F H + ++ C F S G C+ + C +LH P K
Sbjct: 67 VCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 175 DKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIK-GRCSREKCKYFH 233
+K VC+ + RG C +G+ C + H D + + C Y K G CS ++C + H
Sbjct: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,593,795
Number of Sequences: 37866
Number of extensions: 853914
Number of successful extensions: 3666
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 412
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.