Guide to the Human Genome
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Name: ZC3H10 Sequence: fasta or formatted (434aa) NCBI GI: 14249452
Description:

zinc finger CCCH-type containing 10

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         44           2
 C cysteine            2.8         12           2
 D aspartate           4.4         19           1
 E glutamate           6.0         26           3
 F phenylalanine       3.0         13           1
 G glycine            10.1         44           4
 H histidine           2.8         12           1
 I isoleucine          2.8         12           1
 K lysine              3.9         17           2
 L leucine             6.9         30           2
 M methionine          2.3         10           1
 N asparagine          3.2         14           1
 P proline            10.6         46           6
 Q glutamine           4.1         18           2
 R arginine            6.7         29           3
 S serine              7.1         31           2
 T threonine           5.8         25           3
 V valine              5.5         24           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 10 
MBNL1                 0.040   muscleblind-like 1 isoform e 
MBNL1                 0.040   muscleblind-like 1 isoform d 
MBNL3                 0.029   muscleblind-like 3 isoform G 
MUC7                  0.028   mucin 7, secreted precursor 
MUC7                  0.028   mucin 7, secreted precursor 
MUC7                  0.028   mucin 7, secreted precursor 
MBNL3                 0.028   muscleblind-like 3 isoform R 
MUC2                  0.028   mucin 2 precursor 
MKRN1                 0.028   makorin ring finger protein 1 isoform 2 
MKRN1                 0.028   makorin ring finger protein 1 isoform 1 
FMNL2                 0.028   formin-like 2 
BAT2D1                0.028   HBxAg transactivated protein 2 
FMN1                  0.025   formin 1 
PRPF40B               0.025   Huntingtin interacting protein C isoform 1 
CRTC1                 0.024   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.024   mucoepidermoid carcinoma translocated 1 isoform 1 [...
WASL                  0.024   Wiskott-Aldrich syndrome gene-like protein 
VASP                  0.024   vasodilator-stimulated phosphoprotein 
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Hom...
SAMD1                 0.024   sterile alpha motif domain containing 1 
PRPF40B               0.024   Huntingtin interacting protein C isoform 2 
AKAP1                 0.023   A-kinase anchor protein 1 precursor 
LOC284297             0.023   hypothetical protein LOC284297 
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
RBM12                 0.023   RNA binding motif protein 12 
RBM12                 0.023   RNA binding motif protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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