Guide to the Human Genome
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Name: CPSF4 Sequence: fasta or formatted (269aa) NCBI GI: 5729939
Description:

cleavage and polyadenylation specific factor 4, 30kDa isoform 1

Referenced in:

Polyadenylation
Zinc Finger Proteins

Other entries for this name:
alt prot [244aa] cleavage and polyadenylation specific factor 4, 30kDa isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         11           2
 C cysteine            6.7         18           1
 D aspartate           3.0          8           1
 E glutamate           5.9         16           1
 F phenylalanine       5.2         14           2
 G glycine             8.2         22           2
 H histidine           4.1         11           1
 I isoleucine          3.7         10           2
 K lysine              7.1         19           2
 L leucine             6.7         18           1
 M methionine          3.0          8           1
 N asparagine          3.3          9           2
 P proline             8.9         24           2
 Q glutamine           7.4         20           2
 R arginine            4.8         13           2
 S serine              6.7         18           3
 T threonine           3.7         10           2
 V valine              4.1         11           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cleavage and polyadenylation specific factor 4, 30kDa... 
CPSF4                 0.891   cleavage and polyadenylation specific factor 4, 30k...
CPSF4L                0.429   cleavage and polyadenylation specific factor 4-like...
ZC3H3                 0.120   zinc finger CCCH-type containing 3 
ZC3H6                 0.057   zinc finger CCCH-type domain containing 6 
ZC3H4                 0.055   zinc finger CCCH-type containing 4 
ZC3H8                 0.055   zinc finger CCCH-type containing 8 
UNK                   0.046   zinc finger CCCH-type domain containing 5 
MKRN2                 0.045   makorin ring finger protein 2 
ZC3H14                0.041   zinc finger CCCH-type containing 14 isoform 6 [Homo...
ZC3H14                0.041   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.041   zinc finger CCCH-type containing 14 isoform 4 
ZC3H14                0.041   zinc finger CCCH-type containing 14 isoform 2 
ZC3H11A               0.039   zinc finger CCCH-type containing 11A 
ZC3H14                0.036   zinc finger CCCH-type containing 14 isoform 3 
ZC3H14                0.036   zinc finger CCCH-type containing 14 isoform 1 
MKRN1                 0.036   makorin ring finger protein 1 isoform 2 
MKRN1                 0.036   makorin ring finger protein 1 isoform 1 
ZC3H10                0.034   zinc finger CCCH-type containing 10 
MBNL1                 0.029   muscleblind-like 1 isoform e 
MBNL1                 0.029   muscleblind-like 1 isoform d 
U2AF1L4               0.025   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
ZC3H15                0.023   erythropoietin 4 immediate early response 
ZFP36L1               0.021   butyrate response factor 1 
ZFP36L2               0.021   zinc finger protein 36, C3H type-like 2 
MBNL1                 0.021   muscleblind-like 1 isoform g 
MBNL1                 0.021   muscleblind-like 1 isoform f 
MBNL1                 0.021   muscleblind-like 1 isoform c 
MBNL1                 0.021   muscleblind-like 1 isoform b 
MBNL1                 0.021   muscleblind-like 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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