Guide to the Human Genome
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Name: MKRN3 Sequence: fasta or formatted (507aa) NCBI GI: 5032243
Description:

makorin ring finger protein 3

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         56           2
 C cysteine            3.9         20           1
 D aspartate           3.4         17           1
 E glutamate          10.1         51           5
 F phenylalanine       3.7         19           2
 G glycine             9.7         49           3
 H histidine           2.8         14           1
 I isoleucine          3.6         18           2
 K lysine              3.4         17           2
 L leucine             6.3         32           2
 M methionine          2.6         13           1
 N asparagine          2.2         11           1
 P proline             7.7         39           2
 Q glutamine           3.4         17           2
 R arginine            7.1         36           2
 S serine              7.9         40           2
 T threonine           1.6          8           1
 V valine              4.7         24           2
 W tryptophan          2.0         10           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   makorin ring finger protein 3 
MKRN1                 0.430   makorin ring finger protein 1 isoform 1 
MKRN1                 0.286   makorin ring finger protein 1 isoform 2 
MKRN2                 0.256   makorin ring finger protein 2 
MYCBP2                0.017   MYC binding protein 2 
LOC100291061          0.016   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.016   PREDICTED: hypothetical protein XP_002343855 
RNF5                  0.015   ring finger protein 5 
LONRF3                0.014   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.014   LON peptidase N-terminal domain and ring finger 3 is...
ZC3H15                0.014   erythropoietin 4 immediate early response 
RNF141                0.013   ring finger protein 141 
TAF4                  0.013   TBP-associated factor 4 
TRIM58                0.013   tripartite motif-containing 58 
ZSWIM2                0.013   zinc finger, SWIM domain containing 2 
ZC3H10                0.012   zinc finger CCCH-type containing 10 
ZC3H4                 0.012   zinc finger CCCH-type containing 4 
MBNL1                 0.012   muscleblind-like 1 isoform g 
MBNL1                 0.012   muscleblind-like 1 isoform f 
MBNL1                 0.012   muscleblind-like 1 isoform c 
MBNL1                 0.012   muscleblind-like 1 isoform b 
MBNL1                 0.012   muscleblind-like 1 isoform a 
ARHGEF10              0.012   Rho guanine nucleotide exchange factor 10 
ZC3H18                0.012   zinc finger CCCH-type containing 18 
HCN4                  0.011   hyperpolarization activated cyclic nucleotide-gated p...
SFRS2IP               0.011   splicing factor, arginine/serine-rich 2, interactin...
BRAP                  0.011   BRCA1 associated protein 
PARP12                0.011   poly ADP-ribose polymerase 12 
SALL3                 0.011   sal-like 3 
TRIM2                 0.011   tripartite motif-containing 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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