Guide to the Human Genome
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Name: CPSF4L Sequence: fasta or formatted (179aa) NCBI GI: 193788659
Description:

cleavage and polyadenylation specific factor 4-like

Referenced in:

Polyadenylation
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          6           1
 C cysteine            8.4         15           1
 D aspartate           5.0          9           1
 E glutamate           5.6         10           1
 F phenylalanine       8.9         16           2
 G glycine             8.4         15           1
 H histidine           3.4          6           1
 I isoleucine          2.2          4           1
 K lysine             11.7         21           2
 L leucine             8.4         15           2
 M methionine          3.4          6           1
 N asparagine          1.7          3           1
 P proline             5.6         10           1
 Q glutamine           4.5          8           1
 R arginine            4.5          8           1
 S serine              3.9          7           1
 T threonine           2.2          4           1
 V valine              4.5          8           2
 W tryptophan          1.1          2           1
 Y tyrosine            3.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cleavage and polyadenylation specific factor 4-like... 
CPSF4                 0.645   cleavage and polyadenylation specific factor 4, 30k...
CPSF4                 0.645   cleavage and polyadenylation specific factor 4, 30kDa...
ZC3H3                 0.180   zinc finger CCCH-type containing 3 
ZC3H4                 0.086   zinc finger CCCH-type containing 4 
ZC3H6                 0.081   zinc finger CCCH-type domain containing 6 
ZC3H8                 0.073   zinc finger CCCH-type containing 8 
MKRN1                 0.065   makorin ring finger protein 1 isoform 2 
MKRN1                 0.065   makorin ring finger protein 1 isoform 1 
ZC3H11A               0.056   zinc finger CCCH-type containing 11A 
MKRN2                 0.051   makorin ring finger protein 2 
MBNL1                 0.051   muscleblind-like 1 isoform g 
MBNL1                 0.051   muscleblind-like 1 isoform f 
MBNL1                 0.051   muscleblind-like 1 isoform e 
MBNL1                 0.051   muscleblind-like 1 isoform d 
MBNL1                 0.051   muscleblind-like 1 isoform c 
MBNL1                 0.051   muscleblind-like 1 isoform b 
MBNL1                 0.051   muscleblind-like 1 isoform a 
PARP12                0.048   poly ADP-ribose polymerase 12 
MBNL2                 0.043   muscleblind-like 2 isoform 3 
MBNL2                 0.043   muscleblind-like 2 isoform 1 
ZC3H10                0.043   zinc finger CCCH-type containing 10 
ZFP36L1               0.040   butyrate response factor 1 
MBNL3                 0.038   muscleblind-like 3 isoform R 
MBNL3                 0.038   muscleblind-like 3 isoform G 
ZC3H15                0.032   erythropoietin 4 immediate early response 
ZC3H14                0.032   zinc finger CCCH-type containing 14 isoform 6 [Homo...
ZC3H14                0.032   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.032   zinc finger CCCH-type containing 14 isoform 4 
ZC3H14                0.032   zinc finger CCCH-type containing 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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