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Search of human proteins with 169218228
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169218228 PREDICTED: similar to growth arrest-specific 6
[Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169218228 PREDICTED: similar to growth arrest-specific 6 [Hom... 213 3e-56
gi|221316738 growth arrest-specific 6 isoform 3 [Homo sapiens] 203 3e-53
gi|221316735 growth arrest-specific 6 isoform 2 [Homo sapiens] 203 3e-53
gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo sa... 203 3e-53
gi|192447438 protein S, alpha preproprotein [Homo sapiens] 84 2e-17
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 37 0.003
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 37 0.003
gi|226371777 sex hormone-binding globulin isoform 3 precursor [H... 35 0.013
gi|7382460 sex hormone-binding globulin isoform 1 precursor [Hom... 35 0.013
gi|226371613 sex hormone-binding globulin isoform 4 precursor [H... 35 0.017
gi|221316659 leupaxin isoform 1 [Homo sapiens] 32 0.14
gi|4758670 leupaxin isoform 2 [Homo sapiens] 32 0.14
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 29 0.92
gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens] 27 3.5
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 27 4.5
gi|42490758 cell division cycle 25A isoform a [Homo sapiens] 26 5.9
gi|212720630 transmembrane protein 120B [Homo sapiens] 26 7.8
>gi|169218228 PREDICTED: similar to growth arrest-specific 6 [Homo
sapiens]
Length = 100
Score = 213 bits (542), Expect = 3e-56
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE
Sbjct: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
Query: 61 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAPGVLL 100
TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAPGVLL
Sbjct: 61 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAPGVLL 100
>gi|221316738 growth arrest-specific 6 isoform 3 [Homo sapiens]
Length = 379
Score = 203 bits (516), Expect = 3e-53
Identities = 94/96 (97%), Positives = 95/96 (98%)
Query: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE
Sbjct: 102 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 161
Query: 61 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAP 96
TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYM+ P
Sbjct: 162 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTP 197
>gi|221316735 growth arrest-specific 6 isoform 2 [Homo sapiens]
Length = 405
Score = 203 bits (516), Expect = 3e-53
Identities = 94/96 (97%), Positives = 95/96 (98%)
Query: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE
Sbjct: 128 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 187
Query: 61 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAP 96
TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYM+ P
Sbjct: 188 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTP 223
>gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo
sapiens]
Length = 678
Score = 203 bits (516), Expect = 3e-53
Identities = 94/96 (97%), Positives = 95/96 (98%)
Query: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE
Sbjct: 401 MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 460
Query: 61 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMQAP 96
TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYM+ P
Sbjct: 461 TVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTP 496
>gi|192447438 protein S, alpha preproprotein [Homo sapiens]
Length = 676
Score = 84.3 bits (207), Expect = 2e-17
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MKIAVAGDLFQPERGLYHLNLTVGGIPFH-EKDLVQPINPRLDGCMRSWNWLNGEDTTIQ 59
M I G LF+PE GL + G P E +L++PINPRLDGC+RSWN + + I+
Sbjct: 405 MDINKPGPLFKPENGLLETKVYFAGFPRKVESELIKPINPRLDGCIRSWNLMKQGASGIK 464
Query: 60 ETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDY 92
E ++ C E+GS+YPGSG A + +DY
Sbjct: 465 EIIQEKQNKHCLVTVEKGSYYPGSGIAQFHIDY 497
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 21 LTVGGIPF-HEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSF 79
L VGG+P + + P+ +DGC+R+ + Q T + CF+ +RG++
Sbjct: 2881 LYVGGLPINYTTRRIGPVTYSIDGCVRNLHMAEAPADLEQPTSSFHVGT-CFANAQRGTY 2939
Query: 80 YPGSGFA 86
+ G+GFA
Sbjct: 2940 FDGTGFA 2946
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 21 LTVGGIPF-HEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSF 79
L VGG+P + + P+ +DGC+R+ + Q T + CF+ +RG++
Sbjct: 2885 LYVGGLPINYTTRRIGPVTYSIDGCVRNLHMAEAPADLEQPTSSFHVGT-CFANAQRGTY 2943
Query: 80 YPGSGFA 86
+ G+GFA
Sbjct: 2944 FDGTGFA 2950
>gi|226371777 sex hormone-binding globulin isoform 3 precursor [Homo
sapiens]
Length = 293
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 19 LNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGS 78
+ + +GG+ F +L P+ P LDGC+R +WL+ + I + + R C + G
Sbjct: 168 MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISASAPTSLR-SCDVESNPGI 225
Query: 79 FYPGSGFAFYSLDYMQAP 96
F P A ++L + P
Sbjct: 226 FLPPGTQAEFNLRDIPQP 243
>gi|7382460 sex hormone-binding globulin isoform 1 precursor [Homo
sapiens]
Length = 402
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 19 LNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGS 78
+ + +GG+ F +L P+ P LDGC+R +WL+ + I + + R C + G
Sbjct: 168 MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISASAPTSLR-SCDVESNPGI 225
Query: 79 FYPGSGFAFYSLDYMQAP 96
F P A ++L + P
Sbjct: 226 FLPPGTQAEFNLRDIPQP 243
>gi|226371613 sex hormone-binding globulin isoform 4 precursor [Homo
sapiens]
Length = 287
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 19 LNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGS 78
+ + +GG+ F +L P+ P LDGC+R +WL+ + I + + R C + G
Sbjct: 168 MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD-KQAEISASAPTSLR-SCDVESNPGI 225
Query: 79 FYPGSGFAFYSL 90
F P A ++L
Sbjct: 226 FLPPGTQAEFNL 237
>gi|221316659 leupaxin isoform 1 [Homo sapiens]
Length = 391
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 27 PFHEKDLVQPINPRLDGCMRSW--NWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSG 84
P+ KD + +P+ GC R N+L+ DT V CF+ GSF+ G
Sbjct: 261 PYCRKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCG--DCFTSFSTGSFFELDG 318
Query: 85 FAFYSLDYMQAPGVL 99
F L Y G L
Sbjct: 319 RPFCELHYHHRRGTL 333
>gi|4758670 leupaxin isoform 2 [Homo sapiens]
Length = 386
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 27 PFHEKDLVQPINPRLDGCMRSW--NWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSG 84
P+ KD + +P+ GC R N+L+ DT V CF+ GSF+ G
Sbjct: 256 PYCRKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCG--DCFTSFSTGSFFELDG 313
Query: 85 FAFYSLDYMQAPGVL 99
F L Y G L
Sbjct: 314 RPFCELHYHHRRGTL 328
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 3 IAVAGD-LFQPERGLYHLNLTVGGIPF-HEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE 60
+ V GD GL++L GG+P ++ + I + C+ +N +
Sbjct: 2821 VTVVGDGTMLDVEGLFYL----GGLPSQYQARKIGNITHSIPACIGDVT-VNSKQLDKDS 2875
Query: 61 TVKVNTRMQCFSVTERGSFYPGSGFA 86
V T +C++V + G+++ GSG+A
Sbjct: 2876 PVSAFTVNRCYAVAQEGTYFDGSGYA 2901
>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
Length = 272
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 5 VAGDLFQPERGLYHLNLTVG---GIPFHEKDLVQPINPRLDGCMRSWN 49
+ G+++ +H TVG G P H + V P++P L G + S N
Sbjct: 147 LVGEIYGGHHSAFHCG-TVGHSAGHPAHAANSVHPVHPILGGALSSGN 193
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 39 PRLDG--CMRSWNWLNGEDTTIQ 59
PRLD C RSW W G + T++
Sbjct: 408 PRLDDSDCPRSWTWPEGPEQTLR 430
>gi|42490758 cell division cycle 25A isoform a [Homo sapiens]
Length = 524
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 35 QPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGS 83
+P+ P GC+ S G+D Q RM S ER S PG+
Sbjct: 150 KPVRPVSRGCLHSHGLQEGKDLFTQRQNSAPARM--LSSNERDSSEPGN 196
>gi|212720630 transmembrane protein 120B [Homo sapiens]
Length = 339
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 40 RLDGCMRSWNWLNGEDTTIQETVKV 64
+L+ C R W+ L GE +QET ++
Sbjct: 4 QLERCEREWHELEGEFQELQETHRI 28
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,111,697
Number of Sequences: 37866
Number of extensions: 155211
Number of successful extensions: 263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 18
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.