Guide to the Human Genome
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Name: LPXN Sequence: fasta or formatted (386aa) NCBI GI: 4758670
Description:

leupaxin isoform 2

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [391aa] leupaxin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         27           3
 C cysteine            6.0         23           1
 D aspartate           5.2         20           1
 E glutamate           8.0         31           2
 F phenylalanine       5.7         22           2
 G glycine             6.0         23           2
 H histidine           5.4         21           2
 I isoleucine          2.8         11           1
 K lysine              5.7         22           2
 L leucine             9.3         36           2
 M methionine          2.1          8           1
 N asparagine          2.8         11           1
 P proline             7.0         27           3
 Q glutamine           4.9         19           1
 R arginine            3.1         12           2
 S serine              7.0         27           2
 T threonine           4.9         19           2
 V valine              3.4         13           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leupaxin isoform 2 
LPXN                  0.991   leupaxin isoform 1 
PXN                   0.521   paxillin isoform 3 
PXN                   0.521   paxillin isoform 2 
PXN                   0.511   paxillin isoform 1 
TGFB1I1               0.438   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.438   transforming growth factor beta 1 induced transcript...
LDB3                  0.167   LIM domain binding 3 isoform 2 
LDB3                  0.167   LIM domain binding 3 isoform 1 
PDLIM5                0.162   PDZ and LIM domain 5 isoform b 
PDLIM5                0.162   PDZ and LIM domain 5 isoform a 
LIMS1                 0.143   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.138   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.138   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.138   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.138   LIM and senescent cell antigen-like domains 2 isofor...
PDLIM7                0.137   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.137   PDZ and LIM domain 7 isoform 1 
ABLIM1                0.123   actin-binding LIM protein 1 isoform c 
ABLIM1                0.123   actin-binding LIM protein 1 isoform b 
ABLIM1                0.123   actin-binding LIM protein 1 isoform a 
FHL5                  0.119   activator of cAMP-responsive element modulator (CREM...
FHL3                  0.118   four and a half LIM domains 3 
ABLIM3                0.116   actin binding LIM protein family, member 3 
FHL1                  0.114   four and a half LIM domains 1 isoform 2 
FHL1                  0.114   four and a half LIM domains 1 isoform 2 
FHL1                  0.114   four and a half LIM domains 1 isoform 3 
FHL1                  0.114   four and a half LIM domains 1 isoform 5 
FHL1                  0.114   four and a half LIM domains 1 isoform 2 
ABLIM2                0.112   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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