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Search of human proteins with 169206162
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens] 256 2e-69
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 142 8e-35
gi|239755748 PREDICTED: ovostatin [Homo sapiens] 54 2e-08
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 4e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 1e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 42 1e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 42 1e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 42 1e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 3e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 4e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 4e-04
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 40 4e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 5e-04
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 40 5e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 39 7e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 39 7e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 39 7e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 39 7e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 38 0.002
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.002
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.002
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.002
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 38 0.002
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 38 0.002
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 38 0.002
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.003
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 37 0.003
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.003
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 37 0.003
>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 256 bits (655), Expect = 2e-69
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ
Sbjct: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
Query: 61 RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL
Sbjct: 61 RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 142 bits (357), Expect = 8e-35
Identities = 84/157 (53%), Positives = 92/157 (58%), Gaps = 39/157 (24%)
Query: 1 MGVLRARGE-------VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLV-GVASPS 52
MGVL+ARG G PR GGAS CDGGP+S+G KRG L P L G ASP
Sbjct: 48 MGVLKARGGRAWGGRGAGSQSLPR--GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQ 105
Query: 53 CDDGPKSQRGKRGWLSVPAS-----------------------------LGVPPPPAIGV 83
CD GPKSQ GK GWLSVPAS LGVPPPPA+GV
Sbjct: 106 CDGGPKSQGGKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGV 165
Query: 84 LRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
R+RGGRG GS+SPPR GCLP CDGGP+S+ KRG L
Sbjct: 166 QRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWL 202
Score = 100 bits (248), Expect = 3e-22
Identities = 59/116 (50%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 1 MGVLRARGEVGLALS---PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGP 57
MG+LRARG G P +G PP G +RG + SP G P+CD GP
Sbjct: 134 MGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCL-PTCDGGP 192
Query: 58 KSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
KSQ GKRGWLSVPAS V P PA+GVLR+RGGRG GG P CDG P+SR
Sbjct: 193 KSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
Score = 92.0 bits (227), Expect = 9e-20
Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 49 ASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSR-----GGRGAGSQSPPRGGCL 103
ASP GPKSQ GK GW S+ AS VPPPPA+GVL++R GGRGAGSQS PRGG
Sbjct: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
Query: 104 PPCDGGPESRERKRGCL 120
CDGGP+S+ KRG L
Sbjct: 76 ARCDGGPKSQGGKRGWL 92
Score = 55.1 bits (131), Expect = 1e-08
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRG 34
MGVLRARG G+ALSP L+GGASP CDG P+SRG
Sbjct: 216 MGVLRARGGRGVALSPYLMGGASPRCDGDPKSRG 249
Score = 54.3 bits (129), Expect = 2e-08
Identities = 38/91 (41%), Positives = 42/91 (46%), Gaps = 27/91 (29%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCL-------------------- 40
MGV RARG G+ G P CDGGP+S+G KRG L
Sbjct: 163 MGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR 222
Query: 41 ------LSPCLVGVASPSCDDGPKSQRGKRG 65
LSP L+G ASP CD PKS RG RG
Sbjct: 223 GGRGVALSPYLMGGASPRCDGDPKS-RGGRG 252
>gi|239755748 PREDICTED: ovostatin [Homo sapiens]
Length = 257
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/72 (50%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
M VLR GE LAL + VG GG G + G LS L G P D PKSQ
Sbjct: 1 MAVLRHGGEEELALILQ-VGAKDLRIRGGGPQPGGEEGLALSQQLAGGVFPPYDGDPKSQ 59
Query: 61 RGKRGWLSVPAS 72
RGKRGWLSV AS
Sbjct: 60 RGKRGWLSVSAS 71
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 84 LRSRGG-------RGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
LR RGG G GG PP DG P+S+ KRG L
Sbjct: 23 LRIRGGGPQPGGEEGLALSQQLAGGVFPPYDGDPKSQRGKRGWL 66
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 46.6 bits (109), Expect = 4e-06
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + +GE G A P L G PP G + G + G P DDGPK
Sbjct: 1279 GAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSP 1338
Query: 62 GKRGWLSVPASLGVPPPPA-------------IGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G G+ P G P P G S G G S P G PP
Sbjct: 1339 GPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPA 1398
Query: 109 GPESRERKRG 118
GPE R+ ++G
Sbjct: 1399 GPEGRQGEKG 1408
Score = 34.7 bits (78), Expect = 0.017
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 8 GEVGLALSPRLVGGASPPCDGGP------ESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GE GL SP G PP GP + +G P L+G+ P + G K R
Sbjct: 1447 GEQGLPGSP---GPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDR 1503
Query: 62 ------------GKRGWLSVPASLGVPPPPAI-GVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G++G +G P PP + G +G +G+ + P+G P
Sbjct: 1504 GLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPP 1563
Query: 109 GP 110
GP
Sbjct: 1564 GP 1565
Score = 33.9 bits (76), Expect = 0.029
Identities = 38/130 (29%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + RG G L+G PP GP G P G P + GP Q+
Sbjct: 667 GEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDG---QPGPKGNVGPQGEPGPPGQQ 723
Query: 62 GKRGWLSVPASLG-VPPPPAIGVLRSRGGRG----------AGSQSPP--RGGCLPPCDG 108
G G +P G + PP G L G G G + PP +GG PP
Sbjct: 724 GNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQ 783
Query: 109 GPESRERKRG 118
GP RG
Sbjct: 784 GPIGYPGPRG 793
Score = 33.9 bits (76), Expect = 0.029
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G +G PP GP G P G+ +P G K + G+ G
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPG--GIGNPGAV-GEKGEPGEAGEP 1293
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+P G P P +G RG +S P G PP GP + +G
Sbjct: 1294 GLPGEGGPPGP--------KGERGEKGESGPSGAAGPPGPKGPPGDDGPKG 1336
Score = 32.7 bits (73), Expect = 0.065
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGA----SPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGP 57
G+ RGE G P ++ PP GP P G P+ G
Sbjct: 444 GIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGL---------PGPPGTMGPTGQVGD 494
Query: 58 KSQRGKRGWLSVPASLGVPPPPAIGVL---RSRGGRGAGSQSP 97
+RG G +P + G+P PP ++ R GG AGS+ P
Sbjct: 495 PGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGP 537
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G A PP + GP G P G P DG G+RG G P PP
Sbjct: 940 GPAGPPGERGPNGPQGPTGF---PGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPP 996
Query: 80 AIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
GV+ +G G RG PP G +
Sbjct: 997 --GVVGPQGPTGETGPMGERGHPGPPGPPGEQ 1026
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE G G PP GP+ + G + G P + G GK G
Sbjct: 981 RGETGFQGK---TGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGT 1037
Query: 67 LSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+P PP G RG G +G PP GP +RG
Sbjct: 1038 KGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERG 1093
Score = 30.0 bits (66), Expect = 0.42
Identities = 35/109 (32%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGR--KRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
G+VG PR V G P G P RGR G P G DG G++G
Sbjct: 586 GDVG-PQGPRGVQGPPGPA-GKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKG 643
Query: 66 WLSVPASLGVPPPPAIGVLRSRGG----RGAGSQSPPRGGCLPPCDGGP 110
P G P PP R G RG + PRG P GP
Sbjct: 644 HRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGP 692
Score = 30.0 bits (66), Expect = 0.42
Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G P GG PP GP RG + + G+ + G G +G +
Sbjct: 763 GHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDM 822
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
+ G PP G RG P+G P D GP ++G L
Sbjct: 823 GIKGDRGEIGPP--------GPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKL 867
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 46 VGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
+G P +DGP+ +G+ G P LG PP G L G G + P+G P
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPLG--PPGEKGKLGVPGLPGYPGRQGPKGSIGFP 888
Query: 106 CDGGPESRERKRG 118
G + RG
Sbjct: 889 GFPGANGEKGGRG 901
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 28 GGPESRGR-----KRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIG 82
G P RG K G P +VG P+ + GP +RG G P G+P G
Sbjct: 976 GHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP-----G 1030
Query: 83 VLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
+ G +G P LP DG P R
Sbjct: 1031 LAGKEGTKG-----DPGPAGLPGKDGPPGLR 1056
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPA----IGVL 84
GP R +G + P G P +DG K + G+ G G PP G +
Sbjct: 1129 GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188
Query: 85 RSRGGRGAGSQSPPRG 100
G GA + PRG
Sbjct: 1189 GQPGPSGADGEPGPRG 1204
Score = 30.0 bits (66), Expect = 0.42
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G + P G PP GPE R ++G L G + GP+ GK G
Sbjct: 1381 GEPGPSGPP---GKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPG-- 1435
Query: 68 SVPASL-GVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP------CDGGPESRERKRGCL 120
P L G+P P + +G G+ P G PP D GP+ + G +
Sbjct: 1436 --PDGLRGIPGP-----VGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLI 1488
Score = 27.7 bits (60), Expect = 2.1
Identities = 33/120 (27%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR---G 62
A GE G +P G GP RG P G + GP +R G
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNG 952
Query: 63 KRGWLSVPASLGVPPPPA----IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+G P G P PP G RG G ++ P G PP GP+ + G
Sbjct: 953 PQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG---PPGVVGPQGPTGETG 1009
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 18 LVGGASPP-CDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP 76
L G PP G P RG G + + L G P GP G+RG +G+P
Sbjct: 1046 LPGKDGPPGLRGFPGDRGLP-GPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIP 1104
Query: 77 PPPA-IGVLRSRGGRGAGSQSPPRG 100
P G G +GA + P+G
Sbjct: 1105 GRPGPQGPPGPAGEKGAPGEKGPQG 1129
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPP 78
VG P GP +G + P G + GP G +G + P G
Sbjct: 1140 VGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGE 1199
Query: 79 PAIGVLRSRGGRGAGSQSPPRGGCLPP 105
P G +G G PRG PP
Sbjct: 1200 P--GPRGQQGLFGQKGDEGPRGFPGPP 1224
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.4 bits (106), Expect = 1e-05
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV G VG A G PP GP ++G SP G+ P+ GP +
Sbjct: 599 GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA---GPPGEA 655
Query: 62 GKRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
GK G VP LG P P G RG +G + PRG P + G
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707
Score = 39.7 bits (91), Expect = 5e-04
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE G A P VG PP G + SP G A GP+ G+RG
Sbjct: 910 RGETGPAGRPGEVGPPGPPGPAGEKG---------SPGADGPAGAPGTPGPQGIAGQRGV 960
Query: 67 LSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ +P G P + G +G GA + P G PP GP + G
Sbjct: 961 VGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREG 1016
Score = 39.3 bits (90), Expect = 7e-04
Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G P G + P G P S+G G P VGV P GP + GKRG
Sbjct: 419 GPQGPGGPPGPKGNSGEP--GAPGSKG-DTGAKGEPGPVGVQGPP---GPAGEEGKRGAR 472
Query: 68 SVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRG 100
P G+P PP G SRG GA + P+G
Sbjct: 473 GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506
Score = 35.8 bits (81), Expect = 0.008
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 7 RGEVGLALSPRLVGGA-SPPCDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGK 63
RGE G G A +P DG P ++G G +P G PS GP G
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+G P + G S+G GA + P G PP G E + RG
Sbjct: 430 KGNSGEPGAPG-----------SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARG 473
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP GP + G +P G G K RG+ G P + G P P
Sbjct: 998 GPMGPPGLAGPPGESGREG---APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054
Query: 80 A-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+G G RG + P G P GP + RG
Sbjct: 1055 GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Score = 34.7 bits (78), Expect = 0.017
Identities = 35/129 (27%), Positives = 46/129 (35%), Gaps = 24/129 (18%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCL--------LSPCLVGVASPSCDDGPK 58
RGE G A P G P GP + RG + P VG P+ GP+
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP--VGARGPAGPQGPR 1093
Query: 59 SQRGK---------RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
+G+ +G G P PP G +G GA + PRG PP G
Sbjct: 1094 GDKGETGEQGDRGIKGHRGFSGLQGPPGPP--GSPGEQGPSGASGPAGPRG---PPGSAG 1148
Query: 110 PESRERKRG 118
++ G
Sbjct: 1149 APGKDGLNG 1157
Score = 34.3 bits (77), Expect = 0.022
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPES-RGRK-----RGCLLSPCLVGVASPSCDDGPKSQR 61
G G A P G + GP+ RG + RG P G A P+ + G Q
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G +G P G P P G G +G G P+G P G P S+
Sbjct: 395 GAKGANGAPGIAGAPGFP--GARGPSGPQGPGGPPGPKGNSGEP--GAPGSK 442
Score = 33.5 bits (75), Expect = 0.038
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G ++G+ G P VG PP GP KRG P G+ GP +R
Sbjct: 437 GAPGSKGDTGAKGEPGPVGVQGPP---GPAGEEGKRGARGEPGPTGLP------GPPGER 487
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
G G P + GV P G RG+ + P+G
Sbjct: 488 GGPGSRGFPGADGVAGPKG-----PAGERGSPGPAGPKG 521
Score = 33.1 bits (74), Expect = 0.050
Identities = 32/119 (26%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPP-CDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPK 58
G+ RG GL G A P DG P G + G + P G + GP
Sbjct: 728 GMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPS 787
Query: 59 SQRGKRGWLSVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
G G P G P PP G G +G + +G PP GP
Sbjct: 788 GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Score = 33.1 bits (74), Expect = 0.050
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 8 GEVGLALSPRLVGGASPP-CDGGPESRGR--KRGCLLSPCLVGVASPSCDDGPKSQRGKR 64
G VG + G A PP G P + GR G + G P+ +G K RG+
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G P +G P PP G +G+ P G P GP+ +RG
Sbjct: 914 GPAGRPGEVGPPGPPG-----PAGEKGSPGADGPAGA---PGTPGPQGIAGQRG 959
Score = 31.6 bits (70), Expect = 0.14
Identities = 31/113 (27%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
A G G + G A PP GP G + + G P +GP+ RG+ G
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 66 WLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
PP PA G G GA Q +G P G RG
Sbjct: 375 ----------PPGPA-GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 416
Score = 31.6 bits (70), Expect = 0.14
Identities = 40/131 (30%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 7 RGEVGLALSPR---LVGGASPPCDGG-PESRG-----------RKRGCLLSPCLVGVASP 51
RGE G A SP L G A PP + G P +G RG P GV P
Sbjct: 631 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGP 690
Query: 52 SCDDGPKSQRGKRGWLSVPASLGVPPPP----AIGVLRSRGGRGAGSQSPPRGGCLPPCD 107
GP+ G G G P P A G+ G RGA P+G D
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG---DRGD 747
Query: 108 GGPESRERKRG 118
GP+ + G
Sbjct: 748 AGPKGADGSPG 758
Score = 30.8 bits (68), Expect = 0.25
Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
A+GE G A + G A PP GP G + +P G + G G G
Sbjct: 825 AKGEPGDAGAK---GDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG 881
Query: 66 WLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPR---GGCLPPCDGGPESRERKRG 118
+ P G PP G GG+G ++ P G PP GP + G
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLS---VPASLGVP 76
G P C G ES + GV P D GP+ RG G +P G+P
Sbjct: 89 GECCPVCPDGSESPTDQE-------TTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLP 141
Query: 77 PPPAIGVLRSRGGRGAGSQSPPR 99
PP G G G G P+
Sbjct: 142 GPP--GPPGPPGPPGLGGNFAPQ 162
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 21 GASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
GAS P GP G L G+ P GP+ + G G + P G P PP
Sbjct: 1133 GASGPA--GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 41.6 bits (96), Expect = 1e-04
Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G++GL VG P + GPE G K G A P+ D GP Q G++G
Sbjct: 801 KGDMGLKGDRGEVGQIGPRGEDGPE--GPK----------GRAGPTGDPGPSGQAGEKGK 848
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
L VP G P P G +G RG + PRG P GP
Sbjct: 849 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPT---GPRGSRGA 905
Query: 117 RG 118
RG
Sbjct: 906 RG 907
Score = 41.6 bits (96), Expect = 1e-04
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCD---GGPESRGRKRGCLLSPCLVG---VASPSCDD 55
G + + G VG P G PP + GGP+ ++G P G P DD
Sbjct: 1255 GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDD 1314
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
GPK G G+ P G P P GV +G G Q P G P + GP
Sbjct: 1315 GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG---PSGEAGPPGPP 1371
Query: 115 RKRG 118
KRG
Sbjct: 1372 GKRG 1375
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 24 PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPAS----------- 72
P G P S+G K P L+G+ P + G K RG G P +
Sbjct: 1452 PGLKGDPGSKGEKG----HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG 1507
Query: 73 -LGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
LG P PP + G ++G G Q G PP GP
Sbjct: 1508 PLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1550
Score = 35.4 bits (80), Expect = 0.010
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
ARG G L G PP + G G P G P+ DGP+ G G
Sbjct: 1199 ARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1258
Query: 66 WLSVPASLGVP-------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP GV +G RG ++ P G PP GP + +G
Sbjct: 1259 SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG 1318
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G+ +G P + GP RG +P G+A GPK G +G
Sbjct: 640 GDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEP 699
Query: 68 SVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
P G P P IG +G +G + G PP G E + ++G L
Sbjct: 700 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGAL 759
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE+G P G + GP +G + +P G+A + GP+ Q+G G
Sbjct: 1140 KGEIG---EPGQKGSKGDKGENGPPGPPGLQGPVGAP---GIAGGDGEPGPRGQQGMFGQ 1193
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP IG+ G G ++ G PP GP + G
Sbjct: 1194 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1246
Score = 32.7 bits (73), Expect = 0.065
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G+ GLA P G PP G E + ++G L P G P GP+ +G G
Sbjct: 729 QGKPGLAGLP---GADGPPGHPGKEGQSGEKGALGPP---GPQGPIGYPGPRGVKGADGV 782
Query: 67 LSVPASLGVPPPPAI-------------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
+ S G G + G RG P+G P D GP +
Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 842
Query: 114 ERKRGCL 120
++G L
Sbjct: 843 AGEKGKL 849
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE + LV G PP GP G + P L G P D G + G+ G
Sbjct: 440 KGEPAVVEPGMLVEG--PPGPAGPA------GIMGPPGLQGPTGPPGDPGDRGPPGRPG- 490
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSP 97
+P + G+P PP ++ G GS+ P
Sbjct: 491 --LPGADGLPGPPGTMLMLPFRYGGDGSKGP 519
Score = 31.6 bits (70), Expect = 0.14
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGK 63
ARG G GG PP G P RG + +G + P G P DG G+
Sbjct: 905 ARGPTGKPGPKGTSGGDGPP--GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 962
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
RG G P P GV+ +G G RG PP G +
Sbjct: 963 RGETGFQGKTGPPGPG--GVVGPQGPTGETGPIGERGHPGPPGPPGEQ 1008
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G P G PP + GP+ + P L G+ DGP GK G
Sbjct: 705 QGNPGPQGLPGPQGPIGPPGEKGPQGK---------PGLAGLPGA---DGPPGHPGKEGQ 752
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGA 92
+LG P P IG RG +GA
Sbjct: 753 SGEKGALGPPGPQGPIGYPGPRGVKGA 779
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G +P L GG P GP +RG + +G+ GP G++G
Sbjct: 1044 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG- 1102
Query: 67 LSVPASLGVPPPPA--------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P PA +G+ G G+ + +G P G + + + G
Sbjct: 1103 --APGEKG-PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1159
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ---RGKRGWLSVPASLGVPPPPAI-GVL 84
GP R +G + P G A +DG K + G++G G P PP + G +
Sbjct: 1111 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1170
Query: 85 RSRGGRGAGSQSPPRG 100
+ G G + PRG
Sbjct: 1171 GAPGIAGGDGEPGPRG 1186
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/73 (28%), Positives = 26/73 (35%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G DGG G P L G P + G G++G
Sbjct: 1479 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGD 1538
Query: 67 LSVPASLGVPPPP 79
+P G P PP
Sbjct: 1539 SGLPGPPGSPGPP 1551
Score = 27.3 bits (59), Expect = 2.7
Identities = 32/111 (28%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 6 ARGEVGLALSPRL---VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRG 62
A+GE G P VG P GPE G + L G A GP G
Sbjct: 1391 AKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG 1450
Query: 63 KRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G P S G P G++ G G + RG LP G P ++
Sbjct: 1451 LPGLKGDPGSKGEKGHP--GLIGLIGPPGEQGEKGDRG--LPGTQGSPGAK 1497
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR------------GKRGWLSVPASLGVP 76
GP + G + P G S D GP+ R GKRG G+P
Sbjct: 544 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 603
Query: 77 PPPAI-------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+ G +G + P+G PP D G + + G
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIG 652
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G+A P G P GP RG P G S DGP G+RG
Sbjct: 879 KGARGVAGKPGPRGQRGPT---GPRGSRGARGPTGKP---GPKGTSGGDGPPGPPGERGP 932
Query: 67 LSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
+G P PP G G G ++ +G PP GG
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 979
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 33/114 (28%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE G G PP GG +VG P+ + GP +RG G
Sbjct: 963 RGETGFQ------GKTGPPGPGG---------------VVGPQGPTGETGPIGERGHPGP 1001
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRG----------AGSQSPPRGGCLPPCDGGP 110
P G+ P A G ++G G AG + P LP G P
Sbjct: 1002 PGPPGEQGL--PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1053
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 41.6 bits (96), Expect = 1e-04
Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G++GL VG P + GPE G K G A P+ D GP Q G++G
Sbjct: 750 KGDMGLKGDRGEVGQIGPRGEDGPE--GPK----------GRAGPTGDPGPSGQAGEKGK 797
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
L VP G P P G +G RG + PRG P GP
Sbjct: 798 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPT---GPRGSRGA 854
Query: 117 RG 118
RG
Sbjct: 855 RG 856
Score = 41.6 bits (96), Expect = 1e-04
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCD---GGPESRGRKRGCLLSPCLVG---VASPSCDD 55
G + + G VG P G PP + GGP+ ++G P G P DD
Sbjct: 1204 GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDD 1263
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
GPK G G+ P G P P GV +G G Q P G P + GP
Sbjct: 1264 GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG---PSGEAGPPGPP 1320
Query: 115 RKRG 118
KRG
Sbjct: 1321 GKRG 1324
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 24 PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPAS----------- 72
P G P S+G K P L+G+ P + G K RG G P +
Sbjct: 1401 PGLKGDPGSKGEKG----HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG 1456
Query: 73 -LGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
LG P PP + G ++G G Q G PP GP
Sbjct: 1457 PLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1499
Score = 35.4 bits (80), Expect = 0.010
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
ARG G L G PP + G G P G P+ DGP+ G G
Sbjct: 1148 ARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1207
Query: 66 WLSVPASLGVP-------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP GV +G RG ++ P G PP GP + +G
Sbjct: 1208 SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG 1267
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G+ +G P + GP RG +P G+A GPK G +G
Sbjct: 589 GDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEP 648
Query: 68 SVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
P G P P IG +G +G + G PP G E + ++G L
Sbjct: 649 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGAL 708
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE+G P G + GP +G + +P G+A + GP+ Q+G G
Sbjct: 1089 KGEIG---EPGQKGSKGDKGENGPPGPPGLQGPVGAP---GIAGGDGEPGPRGQQGMFGQ 1142
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP IG+ G G ++ G PP GP + G
Sbjct: 1143 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1195
Score = 32.7 bits (73), Expect = 0.065
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G+ GLA P G PP G E + ++G L P G P GP+ +G G
Sbjct: 678 QGKPGLAGLP---GADGPPGHPGKEGQSGEKGALGPP---GPQGPIGYPGPRGVKGADGV 731
Query: 67 LSVPASLGVPPPPAI-------------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
+ S G G + G RG P+G P D GP +
Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 791
Query: 114 ERKRGCL 120
++G L
Sbjct: 792 AGEKGKL 798
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE + LV G PP GP G + P L G P D G + G+ G
Sbjct: 389 KGEPAVVEPGMLVEG--PPGPAGPA------GIMGPPGLQGPTGPPGDPGDRGPPGRPG- 439
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSP 97
+P + G+P PP ++ G GS+ P
Sbjct: 440 --LPGADGLPGPPGTMLMLPFRYGGDGSKGP 468
Score = 31.6 bits (70), Expect = 0.14
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGK 63
ARG G GG PP G P RG + +G + P G P DG G+
Sbjct: 854 ARGPTGKPGPKGTSGGDGPP--GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 911
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
RG G P P GV+ +G G RG PP G +
Sbjct: 912 RGETGFQGKTGPPGPG--GVVGPQGPTGETGPIGERGHPGPPGPPGEQ 957
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G P G PP + GP+ + P L G+ DGP GK G
Sbjct: 654 QGNPGPQGLPGPQGPIGPPGEKGPQGK---------PGLAGLPGA---DGPPGHPGKEGQ 701
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGA 92
+LG P P IG RG +GA
Sbjct: 702 SGEKGALGPPGPQGPIGYPGPRGVKGA 728
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G +P L GG P GP +RG + +G+ GP G++G
Sbjct: 993 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG- 1051
Query: 67 LSVPASLGVPPPPA--------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P PA +G+ G G+ + +G P G + + + G
Sbjct: 1052 --APGEKG-PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1108
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ---RGKRGWLSVPASLGVPPPPAI-GVL 84
GP R +G + P G A +DG K + G++G G P PP + G +
Sbjct: 1060 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1119
Query: 85 RSRGGRGAGSQSPPRG 100
+ G G + PRG
Sbjct: 1120 GAPGIAGGDGEPGPRG 1135
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/73 (28%), Positives = 26/73 (35%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G DGG G P L G P + G G++G
Sbjct: 1428 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGD 1487
Query: 67 LSVPASLGVPPPP 79
+P G P PP
Sbjct: 1488 SGLPGPPGSPGPP 1500
Score = 27.3 bits (59), Expect = 2.7
Identities = 32/111 (28%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 6 ARGEVGLALSPRL---VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRG 62
A+GE G P VG P GPE G + L G A GP G
Sbjct: 1340 AKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG 1399
Query: 63 KRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G P S G P G++ G G + RG LP G P ++
Sbjct: 1400 LPGLKGDPGSKGEKGHP--GLIGLIGPPGEQGEKGDRG--LPGTQGSPGAK 1446
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR------------GKRGWLSVPASLGVP 76
GP + G + P G S D GP+ R GKRG G+P
Sbjct: 493 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 552
Query: 77 PPPAI-------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+ G +G + P+G PP D G + + G
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIG 601
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G+A P G P GP RG P G S DGP G+RG
Sbjct: 828 KGARGVAGKPGPRGQRGPT---GPRGSRGARGPTGKP---GPKGTSGGDGPPGPPGERGP 881
Query: 67 LSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
+G P PP G G G ++ +G PP GG
Sbjct: 882 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 928
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 33/114 (28%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE G G PP GG +VG P+ + GP +RG G
Sbjct: 912 RGETGFQ------GKTGPPGPGG---------------VVGPQGPTGETGPIGERGHPGP 950
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRG----------AGSQSPPRGGCLPPCDGGP 110
P G+ P A G ++G G AG + P LP G P
Sbjct: 951 PGPPGEQGL--PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1002
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 41.6 bits (96), Expect = 1e-04
Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G++GL VG P + GPE G K G A P+ D GP Q G++G
Sbjct: 789 KGDMGLKGDRGEVGQIGPRGEDGPE--GPK----------GRAGPTGDPGPSGQAGEKGK 836
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
L VP G P P G +G RG + PRG P GP
Sbjct: 837 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPT---GPRGSRGA 893
Query: 117 RG 118
RG
Sbjct: 894 RG 895
Score = 41.6 bits (96), Expect = 1e-04
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCD---GGPESRGRKRGCLLSPCLVG---VASPSCDD 55
G + + G VG P G PP + GGP+ ++G P G P DD
Sbjct: 1243 GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDD 1302
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
GPK G G+ P G P P GV +G G Q P G P + GP
Sbjct: 1303 GPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG---PSGEAGPPGPP 1359
Query: 115 RKRG 118
KRG
Sbjct: 1360 GKRG 1363
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 24 PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPAS----------- 72
P G P S+G K P L+G+ P + G K RG G P +
Sbjct: 1440 PGLKGDPGSKGEKG----HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG 1495
Query: 73 -LGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
LG P PP + G ++G G Q G PP GP
Sbjct: 1496 PLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1538
Score = 35.4 bits (80), Expect = 0.010
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
ARG G L G PP + G G P G P+ DGP+ G G
Sbjct: 1187 ARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1246
Query: 66 WLSVPASLGVP-------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP GV +G RG ++ P G PP GP + +G
Sbjct: 1247 SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG 1306
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G+ +G P + GP RG +P G+A GPK G +G
Sbjct: 628 GDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEP 687
Query: 68 SVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
P G P P IG +G +G + G PP G E + ++G L
Sbjct: 688 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGAL 747
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE+G P G + GP +G + +P G+A + GP+ Q+G G
Sbjct: 1128 KGEIG---EPGQKGSKGDKGENGPPGPPGLQGPVGAP---GIAGGDGEPGPRGQQGMFGQ 1181
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP IG+ G G ++ G PP GP + G
Sbjct: 1182 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1234
Score = 32.7 bits (73), Expect = 0.065
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G+ GLA P G PP G E + ++G L P G P GP+ +G G
Sbjct: 717 QGKPGLAGLP---GADGPPGHPGKEGQSGEKGALGPP---GPQGPIGYPGPRGVKGADGV 770
Query: 67 LSVPASLGVPPPPAI-------------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
+ S G G + G RG P+G P D GP +
Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 830
Query: 114 ERKRGCL 120
++G L
Sbjct: 831 AGEKGKL 837
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE + LV G PP GP G + P L G P D G + G+ G
Sbjct: 428 KGEPAVVEPGMLVEG--PPGPAGPA------GIMGPPGLQGPTGPPGDPGDRGPPGRPG- 478
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSP 97
+P + G+P PP ++ G GS+ P
Sbjct: 479 --LPGADGLPGPPGTMLMLPFRYGGDGSKGP 507
Score = 31.6 bits (70), Expect = 0.14
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGK 63
ARG G GG PP G P RG + +G + P G P DG G+
Sbjct: 893 ARGPTGKPGPKGTSGGDGPP--GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 950
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
RG G P P GV+ +G G RG PP G +
Sbjct: 951 RGETGFQGKTGPPGPG--GVVGPQGPTGETGPIGERGHPGPPGPPGEQ 996
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G P G PP + GP+ + P L G+ DGP GK G
Sbjct: 693 QGNPGPQGLPGPQGPIGPPGEKGPQGK---------PGLAGLPGA---DGPPGHPGKEGQ 740
Query: 67 LSVPASLGVPPPPA-IGVLRSRGGRGA 92
+LG P P IG RG +GA
Sbjct: 741 SGEKGALGPPGPQGPIGYPGPRGVKGA 767
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G +P L GG P GP +RG + +G+ GP G++G
Sbjct: 1032 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG- 1090
Query: 67 LSVPASLGVPPPPA--------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P PA +G+ G G+ + +G P G + + + G
Sbjct: 1091 --APGEKG-PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENG 1147
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ---RGKRGWLSVPASLGVPPPPAI-GVL 84
GP R +G + P G A +DG K + G++G G P PP + G +
Sbjct: 1099 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1158
Query: 85 RSRGGRGAGSQSPPRG 100
+ G G + PRG
Sbjct: 1159 GAPGIAGGDGEPGPRG 1174
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/73 (28%), Positives = 26/73 (35%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G DGG G P L G P + G G++G
Sbjct: 1467 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGD 1526
Query: 67 LSVPASLGVPPPP 79
+P G P PP
Sbjct: 1527 SGLPGPPGSPGPP 1539
Score = 27.3 bits (59), Expect = 2.7
Identities = 32/111 (28%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 6 ARGEVGLALSPRL---VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRG 62
A+GE G P VG P GPE G + L G A GP G
Sbjct: 1379 AKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG 1438
Query: 63 KRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G P S G P G++ G G + RG LP G P ++
Sbjct: 1439 LPGLKGDPGSKGEKGHP--GLIGLIGPPGEQGEKGDRG--LPGTQGSPGAK 1485
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR------------GKRGWLSVPASLGVP 76
GP + G + P G S D GP+ R GKRG G+P
Sbjct: 532 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 591
Query: 77 PPPAI-------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+ G +G + P+G PP D G + + G
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIG 640
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G G+A P G P GP RG P G S DGP G+RG
Sbjct: 867 KGARGVAGKPGPRGQRGPT---GPRGSRGARGPTGKP---GPKGTSGGDGPPGPPGERGP 920
Query: 67 LSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
+G P PP G G G ++ +G PP GG
Sbjct: 921 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 967
Score = 26.6 bits (57), Expect = 4.6
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 33/114 (28%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE G G PP GG +VG P+ + GP +RG G
Sbjct: 951 RGETGFQ------GKTGPPGPGG---------------VVGPQGPTGETGPIGERGHPGP 989
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRG----------AGSQSPPRGGCLPPCDGGP 110
P G+ P A G ++G G AG + P LP G P
Sbjct: 990 PGPPGEQGL--PGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1041
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 40.4 bits (93), Expect = 3e-04
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV +G +G P + GG P + GP+ RG G P DGP ++
Sbjct: 1021 GVPGPKGSMG---HPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQ 1077
Query: 62 GKRGWLSVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
G RG P G P P G L SRG G S P G P + GP+
Sbjct: 1078 GSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQ 1134
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 1 MGVLRARGEVGLALSPR---LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGP 57
+G + +G +G P G PP D GPE K G P G P D+GP
Sbjct: 891 LGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGP 950
Query: 58 KSQRGKRGWLSVPASLGVPPPPAIGVLRSRGG 89
G G P G P P + ++ G
Sbjct: 951 MGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPG 982
Score = 36.2 bits (82), Expect = 0.006
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 26/141 (18%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGG-------------PESRGRK--RGCLLSPCLV 46
GV RG GL +P +G PP G P +G K G + P L
Sbjct: 793 GVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLK 852
Query: 47 G------VASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPR- 99
G V S D G + +G +G P + G P P +G + +G G P
Sbjct: 853 GDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGP--LGKVGDKGSIGFPGPPGPEG 910
Query: 100 --GGCLPPCDGGPESRERKRG 118
G PP D GPE + K G
Sbjct: 911 FPGDIGPPGDNGPEGMKGKPG 931
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP G E + ++G P L GV D G G++G++ +G P
Sbjct: 949 GPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEP--- 1005
Query: 80 AIGVLRSRGGRG----------AGSQSPP--RGGCLPPCDGGPESRERKRG 118
G++ +G RG GS P GG P + GP+ RG
Sbjct: 1006 --GIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRG 1054
Score = 31.2 bits (69), Expect = 0.19
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G +GL P +VG GP +G + P + G + GP+ G RG
Sbjct: 997 GFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRG-- 1054
Query: 68 SVPASLGVPPPPAIGVLRSRGGRG----AGSQSPPRGGCLPPCDGGPESRERKRG 118
PP G RG RG AG Q RG PP GP+ R + G
Sbjct: 1055 ---------PPGMRGAKGRRGPRGPDGPAGEQG-SRGLKGPP---GPQGRPGRPG 1096
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLS---PCLVGVASPSCDDG-- 56
G + +G G P L G A D GP ++G + P L G + P DG
Sbjct: 1144 GEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLK 1203
Query: 57 -------PKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
P + G++G + G P PP GV RG G + +G
Sbjct: 1204 GDRGDPGPDGEHGEKGQEGLMGEDGPPGPP--GVTGVRGPEGKSGKQGEKG 1252
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 8 GEVGLALSPRLVGGASPPCD---------GGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
GE+G L G PP D GP K G ++ P +G+ PS GPK
Sbjct: 1532 GEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEG-IVGP--LGILGPSGLPGPK 1588
Query: 59 SQRGKRGWLSVPASLGVPPP 78
+G RG + G P P
Sbjct: 1589 GDKGSRGDWGLQGPRGPPGP 1608
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGG----------PESRGR-----KRGCLLSPCLVGVAS 50
A+G++GL P L G PP G P +G+ G P G+
Sbjct: 689 AKGDMGL---PGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPG 745
Query: 51 PSCDDGPKSQRGKRGWLSVPASLGVP 76
P D GPK G RG++ +P G+P
Sbjct: 746 PVGDPGPK---GSRGYIGLPGLFGLP 768
Score = 29.3 bits (64), Expect = 0.72
Identities = 35/134 (26%), Positives = 44/134 (32%), Gaps = 23/134 (17%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPE-------SRGRK--RGCLLSPCLVGVASPSCDDGPK 58
GE G P + G P G + ++G K +G L + G P GPK
Sbjct: 1225 GEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPK 1284
Query: 59 SQRGKRGWLSVPASLGVPPPPA----------IGVLRSRGGRG----AGSQSPPRGGCLP 104
RG G P +G P +G L G +G G G P
Sbjct: 1285 GSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGP 1344
Query: 105 PCDGGPESRERKRG 118
P D GP RG
Sbjct: 1345 PGDRGPVGDRGDRG 1358
Score = 28.9 bits (63), Expect = 0.94
Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G+ G P G P GP + +G + P G D GP G G
Sbjct: 870 QGDKGSQGLPGFPGARGKP---GPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGM 926
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P + G+P P RG G P G PP G E + ++G
Sbjct: 927 KGKPGARGLPGP--------RGQLGPEGDEGPMG---PPGAPGLEGQPGRKG 967
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G P G P D GP+ RG + P L G+ + G GKRG +
Sbjct: 730 GSPGAKGYPGRQGLPGPVGDPGPKG---SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKM 786
Query: 68 SVPA------------------SLGVPPPPAI-GVLRSRGGRGAGSQSPPRG 100
+P LG+P PP + G++ G G P+G
Sbjct: 787 GMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKG 838
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.0 bits (92), Expect = 4e-04
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCD---DGPK 58
GV RGE G +P G P GP + RG + +G + P+ GP+
Sbjct: 1053 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1112
Query: 59 SQRGKRGWLSVPAS------------LGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPC 106
RG +G P G+P PP G +G G S PRG PP
Sbjct: 1113 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP--GPSGDQGASGPAGPSGPRG---PPG 1167
Query: 107 DGGPESRERKRG 118
GP ++ G
Sbjct: 1168 PVGPSGKDGANG 1179
Score = 38.5 bits (88), Expect = 0.001
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 8 GEVGLALSPRL---------VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
GE GL +P L G A PP GP ++G G+ P GP
Sbjct: 618 GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP---PGPP 674
Query: 59 SQRGKRGWLSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
+ GK G VP G P P G RG GA PRG P GP+
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734
Query: 115 RKRG 118
G
Sbjct: 735 GPAG 738
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G A P L G A PP + G G P G+A G QRG+RG+
Sbjct: 936 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 995
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+P G P +G GA P G PP GP + G
Sbjct: 996 GLPGPSGEP--------GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/130 (26%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGV------------A 49
G + G G+A +P G PP G +G P + G A
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 476
Query: 50 SPSCDDGPKSQRGKRGWLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
P GP + GKRG P +G + PP G +RG G + P+G P +
Sbjct: 477 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA---PGER 533
Query: 109 GPESRERKRG 118
GP +G
Sbjct: 534 GPSGLAGPKG 543
Score = 33.5 bits (75), Expect = 0.038
Identities = 39/136 (28%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + G G +P G A P GPE RG +P G A S + G
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIP 416
Query: 62 GKRGWLSVPASLGVP----------PPPAIGVLRSRGGRG-------AGSQSP--PRGGC 102
G +G P G P P A G L +G G G Q P G
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 476
Query: 103 LPPCDGGPESRERKRG 118
P GP E KRG
Sbjct: 477 GPQGAPGPAGEEGKRG 492
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G +P G PP GP G G P DG +G RG
Sbjct: 1002 GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 1061
Query: 68 SVPASLGVPPPPA----IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP G +G RG P G P G + + RG
Sbjct: 1062 GAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG 1116
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/125 (25%), Positives = 40/125 (32%), Gaps = 25/125 (20%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPP 78
VG P G +RG P G A P DG +G++G G P P
Sbjct: 806 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865
Query: 79 PA----------IGVLRSRGGRG-------------AGSQSPP--RGGCLPPCDGGPESR 113
GV +G RG AG PP G PP GP +
Sbjct: 866 QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 925
Query: 114 ERKRG 118
+ +G
Sbjct: 926 DGPKG 930
Score = 32.3 bits (72), Expect = 0.085
Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G G P G PP G +P G PS DGPK R
Sbjct: 885 GARGAQGPPGATGFPGAAGRVGPPGSNG------------NPGPPGPPGPSGKDGPKGAR 932
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P G P G G +G P G PP GP+ +RG
Sbjct: 933 GDSG---PPGRAG--EPGLQGPAGPPGEKGEPGDDGPSGAEGPP---GPQGLAGQRG 981
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 18 LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP 77
L G PP +GG G +P LVG P + G +RG G + G+P
Sbjct: 667 LPGPPGPPGEGGKPGDQGVPGEAGAPGLVG---PRGERGFPGERGSPGAQGLQGPRGLPG 723
Query: 78 PPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
P + G +GA + P G PP
Sbjct: 724 TPG-----TDGPKGASGPAGPPGAQGPP 746
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 47 GVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPC 106
G + P GP GK G +P +G P P RG G + P G PP
Sbjct: 1158 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--------RGRSGETGPAGPPGNPGPPG 1209
Query: 107 DGGP 110
GP
Sbjct: 1210 PPGP 1213
Score = 28.9 bits (63), Expect = 0.94
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G ARG G G A PP GP G +P G A P+ GP+ +
Sbjct: 339 GAAGARGNDGQP------GPAGPPGPVGPAGGPGFPG---APGAKGEAGPTGARGPEGAQ 389
Query: 62 GKRGWLSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
G RG P S G P G+ ++G GA + G P GP+
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 443
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCL---------VGVASPSCDDGPK 58
G G P ++G P G + ++G +P L G A P GP
Sbjct: 591 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 650
Query: 59 SQRGKRGWLSVPASLGVPPPP 79
+RG++G G+P PP
Sbjct: 651 GERGEQGAPGPSGFQGLPGPP 671
Score = 28.5 bits (62), Expect = 1.2
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 8 GEVGLALSPRLVGGASPPCD-GGPESRGRKRGCLLSPCLVGVASPSC---DDGPKSQRGK 63
G+ G P VG PP + G P +RG P G+A P + GP G
Sbjct: 489 GKRGARGEPGGVGPIGPPGERGAPGNRG-------FPGQDGLAGPKGAPGERGPSGLAGP 541
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG--GPESRERKRG 118
+G P G P P L R G AG Q P DG GP + RG
Sbjct: 542 KGANGDPGRPGEPGLPGARGLTGRPG-DAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ GLA G P GP+ G P L G + G +GK G
Sbjct: 519 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPS 578
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
P G P PP G +RG G P+G P G
Sbjct: 579 GAPGEDGRPGPP--GPQGARGQPGVMGFPGPKGANGEPGKAG 618
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP GP + G + P GP+ + G+ G P + G P PP
Sbjct: 1161 GPRGPPGPVGPSGKDGANG---------IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211
Query: 80 AIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKR 117
G G G G L P + GP+ + R
Sbjct: 1212 --------GPPGPGIDMSAFAG-LGPREKGPDPLQYMR 1240
Score = 26.9 bits (58), Expect = 3.6
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 14 LSPRL-VGGASPPC-------DGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
LSP + G P C G P +G+K +VG P GP ++G RG
Sbjct: 76 LSPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG 135
Query: 66 WLSVPASLGVPPPPAIGVLRSRGGRGA--GSQSPPRGGCLPPCDGGP 110
G P P R R G G+ PP PP GP
Sbjct: 136 DRGDKGEKGAPGP------RGRDGEPGTPGNPGPPG----PPGPPGP 172
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.0 bits (92), Expect = 4e-04
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCD---DGPK 58
GV RGE G +P G P GP + RG + +G + P+ GP+
Sbjct: 984 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1043
Query: 59 SQRGKRGWLSVPAS------------LGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPC 106
RG +G P G+P PP G +G G S PRG PP
Sbjct: 1044 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP--GPSGDQGASGPAGPSGPRG---PPG 1098
Query: 107 DGGPESRERKRG 118
GP ++ G
Sbjct: 1099 PVGPSGKDGANG 1110
Score = 38.5 bits (88), Expect = 0.001
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 8 GEVGLALSPRL---------VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
GE GL +P L G A PP GP ++G G+ P GP
Sbjct: 549 GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP---GPP 605
Query: 59 SQRGKRGWLSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
+ GK G VP G P P G RG GA PRG P GP+
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665
Query: 115 RKRG 118
G
Sbjct: 666 GPAG 669
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G A P L G A PP + G G P G+A G QRG+RG+
Sbjct: 867 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 926
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+P G P +G GA P G PP GP + G
Sbjct: 927 GLPGPSGEP--------GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969
Score = 37.4 bits (85), Expect = 0.003
Identities = 34/130 (26%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGV------------A 49
G + G G+A +P G PP G +G P + G A
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 407
Query: 50 SPSCDDGPKSQRGKRGWLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
P GP + GKRG P +G + PP G +RG G + P+G P +
Sbjct: 408 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA---PGER 464
Query: 109 GPESRERKRG 118
GP +G
Sbjct: 465 GPSGLAGPKG 474
Score = 33.5 bits (75), Expect = 0.038
Identities = 39/136 (28%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + G G +P G A P GPE RG +P G A S + G
Sbjct: 288 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIP 347
Query: 62 GKRGWLSVPASLGVP----------PPPAIGVLRSRGGRG-------AGSQSP--PRGGC 102
G +G P G P P A G L +G G G Q P G
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 407
Query: 103 LPPCDGGPESRERKRG 118
P GP E KRG
Sbjct: 408 GPQGAPGPAGEEGKRG 423
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G +P G PP GP G G P DG +G RG
Sbjct: 933 GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 992
Query: 68 SVPASLGVPPPPA----IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G P PP G +G RG P G P G + + RG
Sbjct: 993 GAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG 1047
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/125 (25%), Positives = 40/125 (32%), Gaps = 25/125 (20%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPP 78
VG P G +RG P G A P DG +G++G G P P
Sbjct: 737 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796
Query: 79 PA----------IGVLRSRGGRG-------------AGSQSPP--RGGCLPPCDGGPESR 113
GV +G RG AG PP G PP GP +
Sbjct: 797 QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 856
Query: 114 ERKRG 118
+ +G
Sbjct: 857 DGPKG 861
Score = 32.3 bits (72), Expect = 0.085
Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G G P G PP G +P G PS DGPK R
Sbjct: 816 GARGAQGPPGATGFPGAAGRVGPPGSNG------------NPGPPGPPGPSGKDGPKGAR 863
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P G P G G +G P G PP GP+ +RG
Sbjct: 864 GDSG---PPGRAG--EPGLQGPAGPPGEKGEPGDDGPSGAEGPP---GPQGLAGQRG 912
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 18 LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP 77
L G PP +GG G +P LVG P + G +RG G + G+P
Sbjct: 598 LPGPPGPPGEGGKPGDQGVPGEAGAPGLVG---PRGERGFPGERGSPGAQGLQGPRGLPG 654
Query: 78 PPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
P + G +GA + P G PP
Sbjct: 655 TPG-----TDGPKGASGPAGPPGAQGPP 677
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 47 GVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPC 106
G + P GP GK G +P +G P P RG G + P G PP
Sbjct: 1089 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--------RGRSGETGPAGPPGNPGPPG 1140
Query: 107 DGGP 110
GP
Sbjct: 1141 PPGP 1144
Score = 28.9 bits (63), Expect = 0.94
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G ARG G G A PP GP G +P G A P+ GP+ +
Sbjct: 270 GAAGARGNDGQP------GPAGPPGPVGPAGGPGFPG---APGAKGEAGPTGARGPEGAQ 320
Query: 62 GKRGWLSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
G RG P S G P G+ ++G GA + G P GP+
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 374
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCL---------VGVASPSCDDGPK 58
G G P ++G P G + ++G +P L G A P GP
Sbjct: 522 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA 581
Query: 59 SQRGKRGWLSVPASLGVPPPP 79
+RG++G G+P PP
Sbjct: 582 GERGEQGAPGPSGFQGLPGPP 602
Score = 28.5 bits (62), Expect = 1.2
Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 8 GEVGLALSPRLVGGASPPCD-GGPESRGRKRGCLLSPCLVGVASPSC---DDGPKSQRGK 63
G+ G P VG PP + G P +RG P G+A P + GP G
Sbjct: 420 GKRGARGEPGGVGPIGPPGERGAPGNRG-------FPGQDGLAGPKGAPGERGPSGLAGP 472
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG--GPESRERKRG 118
+G P G P P L R G AG Q P DG GP + RG
Sbjct: 473 KGANGDPGRPGEPGLPGARGLTGRPG-DAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ GLA G P GP+ G P L G + G +GK G
Sbjct: 450 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPS 509
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
P G P PP G +RG G P+G P G
Sbjct: 510 GAPGEDGRPGPP--GPQGARGQPGVMGFPGPKGANGEPGKAG 549
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP GP + G + P GP+ + G+ G P + G P PP
Sbjct: 1092 GPRGPPGPVGPSGKDGANG---------IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142
Query: 80 AIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKR 117
G G G G L P + GP+ + R
Sbjct: 1143 --------GPPGPGIDMSAFAG-LGPREKGPDPLQYMR 1171
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 45 LVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGA--GSQSPPRGGC 102
+VG P GP ++G RG G P P R R G G+ PP
Sbjct: 46 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGP------RGRDGEPGTPGNPGPPG--- 96
Query: 103 LPPCDGGP 110
PP GP
Sbjct: 97 -PPGPPGP 103
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 40.0 bits (92), Expect = 4e-04
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P + G P GP+ RG + G+ P D GPK +G +G
Sbjct: 294 KGERGECGKPGIKGDKGSPGPYGPKG---PRG------IQGITGPPGDPGPKGFQGNKGE 344
Query: 67 LSVPASLGVPPPPAI---GVLRSRGGRGAGSQSPPRGGCLP--PCDGGPESRERKRG 118
P G P P I G+ RG G P G P P GPE +RG
Sbjct: 345 PGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERG 401
Score = 33.5 bits (75), Expect = 0.038
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG- 65
+GE G+ + P + G S P GP+ RG P G S GPK +G RG
Sbjct: 574 KGEPGI-MGPFGMPGTSIPGPPGPKG---DRGGPGIPGFKGEPGLSIR-GPKGVQGPRGP 628
Query: 66 ----------WLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
+ VP G+P PP LR G GA + RG PP GP
Sbjct: 629 VGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRG---PPGPSGP 680
Score = 28.9 bits (63), Expect = 0.94
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 1 MGVLRARGEVGLALS-----PRLVGGASPPCDGGPESRGRKRGCLLSPCL--------VG 47
MG RG VG+ + P +G P G + K+G P G
Sbjct: 486 MGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKG 545
Query: 48 VASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPP-----RGG 101
P D+G K +G +G +P G P G++ G G PP RGG
Sbjct: 546 QPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEP--GIMGPFGMPGTSIPGPPGPKGDRGG 602
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 11 GLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVP 70
GL S VG P GP G +G P +G+ G GK+G +P
Sbjct: 475 GLPGSKGEVGQMGPTGPRGPVGIG-VQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLP 533
Query: 71 ASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+ G PP G +G G +G P GP+
Sbjct: 534 GARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPK 574
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 5e-04
Identities = 36/109 (33%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSC-----DDGPKSQRG 62
G GL SP L G P + GP RG K ++G P D GP G
Sbjct: 1320 GAPGLKGSPGLPGPRGDPGERGP--RGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPG 1377
Query: 63 KRGWLSVPASLGVPPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGP 110
RG L P G P P + +G RG G P GG P G P
Sbjct: 1378 PRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLP 1426
Score = 33.1 bits (74), Expect = 0.050
Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 8 GEVGLALSPRLVGGASPPC---------DGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G GL SP G PP DG P G+ SP G P GPK
Sbjct: 1424 GLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPG----SPGEQGPRGPPGAIGPK 1479
Query: 59 SQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
RG G L G PP G SRG G + +G PP GP R+ ++G
Sbjct: 1480 GDRGFPGPLGEAGEKGERGPP--GPAGSRGLPGVAGRPGAKGPEGPP---GPTGRQGEKG 1534
Score = 33.1 bits (74), Expect = 0.050
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + +G+ G P +G A + GP RG P + G +GP
Sbjct: 1474 GAIGPKGDRGF---PGPLGEAGEKGERGPPGPAGSRGL---PGVAGRPGAKGPEGPPGPT 1527
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG-----------GCLPPCDGGP 110
G++G P G P V +G +G + PRG G + P D GP
Sbjct: 1528 GRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGP 1587
Query: 111 ESRERKRG 118
+ RG
Sbjct: 1588 KGDPGDRG 1595
Score = 33.1 bits (74), Expect = 0.050
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 7 RGEVGLALSPRLVGGAS-----PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
+G GLAL R G S P G P GR G VG A + G + ++
Sbjct: 2014 QGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGG-------VGEAGRPGERGERGEK 2066
Query: 62 GKRGWLS------VPASLGVPPPPAIGVLRSRGGRG-AGSQSPP--RGGCLPPCDGGPES 112
G+RG +P + G P PP V G G +G Q PP +G P G +
Sbjct: 2067 GERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQG 2126
Query: 113 RERKRG 118
+ RG
Sbjct: 2127 PKGDRG 2132
Score = 32.7 bits (73), Expect = 0.065
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ RG G P L G PP GP G P G+A P+ GP +
Sbjct: 2153 GLPGERGMAGPEGKPGLQGPRGPP---GPVGGHGDPG---PPGAPGLAGPAGPQGPSGLK 2206
Query: 62 GK--------RGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPES 112
G+ RG ++G+P PP G++ +G G Q G P G
Sbjct: 2207 GEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASG 2266
Query: 113 RERKRG 118
++ RG
Sbjct: 2267 KDGDRG 2272
Score = 32.7 bits (73), Expect = 0.065
Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGKRG 65
G VG + L G P G P RG + G G P GP RG+RG
Sbjct: 2446 GSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERG 2505
Query: 66 WLSVPASLGV------------PPPP--AIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
S G+ PP P A G + RG RG PRG P D G +
Sbjct: 2506 EKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSK 2565
Query: 112 SRERKRG 118
+G
Sbjct: 2566 GEPGDKG 2572
Score = 32.3 bits (72), Expect = 0.085
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVG--VASPSCDDG--- 56
G +RG G+A P G PP G + + G P +VG VA P + G
Sbjct: 1501 GPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVG 1560
Query: 57 ---PKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
P+ G +G P + P G RG G ++ P G PP + G R
Sbjct: 1561 PAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGR 1620
Score = 32.0 bits (71), Expect = 0.11
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG +GL G A PP D GP ++G P G P DG ++G G
Sbjct: 1594 RGPIGLT------GRAGPPGDSGPPG---EKGDPGRPGPPGPVGPRGRDGEVGEKGDEG- 1643
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+P G RG RGA P G D G + R G
Sbjct: 1644 --PPGDPGLP-----GKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPG 1688
Score = 32.0 bits (71), Expect = 0.11
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G P L G P D G + R ++G G + DGPK +RG G L
Sbjct: 1830 GKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDS------GASGREGRDGPKGERGAPGIL 1883
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G+P P G G G P GG P D G + ++G
Sbjct: 1884 GPQGPPGLPGPV--------GPPGQGFPGVP-GGTGPKGDRGETGSKGEQG 1925
Score = 28.5 bits (62), Expect = 1.2
Identities = 37/134 (27%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 2 GVLRARGEVGLALSPRLVGGASPP-------------------CDGGPESRGR--KRGCL 40
G + RG+VG P L G P DG P S GR G
Sbjct: 1260 GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP 1319
Query: 41 LSPCL---VGVASPSCDDGPKSQRGKRGWLSVPAS-LGVPPPPAIGVLRSRGGRGAGSQS 96
+P L G+ P D G + RG +G P +G P G+ +G G
Sbjct: 1320 GAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGP---GLPGRKGDPGPSGPP 1376
Query: 97 PPRGGCLPPCDGGP 110
PRG P GP
Sbjct: 1377 GPRGPLGDPGPRGP 1390
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 57 PKSQRGKRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGPES 112
PK Q+G+ G + + +G P P + G +G G+ + RG P DG P S
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERG--FPGADGRPGS 1309
Query: 113 RER 115
R
Sbjct: 1310 PGR 1312
Score = 28.1 bits (61), Expect = 1.6
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESR------GRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+G++GL P G P GP +RG P G+ P GP
Sbjct: 2388 KGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGS 2447
Query: 61 RGKRGWLSVPASLGVP------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
G G + G P P G RG G Q PRG PP G
Sbjct: 2448 VGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRG 2502
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDG---------------PKSQRGKRGWLSVPASL 73
GP+ ++G +P + G PS +DG P+ +G++G P
Sbjct: 2692 GPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGER 2751
Query: 74 GVPPPPAIGVLRSRGGRGAGSQSPPRG 100
V P G RG +G + PRG
Sbjct: 2752 VVGAPGVPGAPGERGEQGRPGPAGPRG 2778
Score = 26.6 bits (57), Expect = 4.6
Identities = 30/112 (26%), Positives = 37/112 (33%), Gaps = 4/112 (3%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G G+ G P L G P GP K G P L G D G ++
Sbjct: 1797 GAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRK 1856
Query: 62 GKRGWLSVPASLGVPPPP----AIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
G++G G P A G+L +G G P G P GG
Sbjct: 1857 GEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGG 1908
Score = 26.6 bits (57), Expect = 4.6
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 11 GLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVG-VASPSCD--DGPKSQRGKRGWL 67
GL VG PP GP +G P VG P DG + G RG
Sbjct: 2218 GLTGPTGAVGLPGPP---GPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSP 2274
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQS 96
VP S G+P P +G G GA Q+
Sbjct: 2275 GVPGSPGLPGP--VGPKGEPGPTGAPGQA 2301
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
A G VG+ P G P GP RG P +VG + GPK +RG++G
Sbjct: 548 ALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGV---PGIVGAVGQIGNTGPKGKRGEKG 604
Query: 66 WLSVPASL-----GVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
P + G+P PP I L R G+ + RG P + G
Sbjct: 605 ---DPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAG 650
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP--- 76
G A PP G + G P + G+ + GP G +G +P G+P
Sbjct: 57 GKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPG 116
Query: 77 ------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
PP +G+ G RG P G PP GP + + G +
Sbjct: 117 FAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPP---GPPGKPGRPGTI 163
Score = 31.2 bits (69), Expect = 0.19
Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCL---------LSP--CLVGVASPSCDDG 56
GE+G+ G P GP + + G + L P C G+ P G
Sbjct: 131 GEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQG 190
Query: 57 PKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
K GKRG L P G P P G + + G +G P+G P GP+
Sbjct: 191 VKGHAGKRGILGDPGHQGKPGPK--GDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGP 248
Query: 117 RG 118
G
Sbjct: 249 HG 250
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G + GP +G + G P GP+ ++G +G
Sbjct: 351 QGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGE 410
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G+P P G+ +G +G+ ++ PRG P G + ++G
Sbjct: 411 QGPP---GIPGPQ--GLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKG 457
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P + G P GP + G P G S + GPK Q+G RG P G
Sbjct: 423 PGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGD 482
Query: 76 PPPPAI-GVLRSRGGRG-AGSQSPP 98
P + G G RG AG++ P
Sbjct: 483 AGAPGVQGYPGPPGPRGLAGNRGVP 507
Score = 29.3 bits (64), Expect = 0.72
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + A GE G+ P G P GP+ G +G P ++GP+
Sbjct: 214 GDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPP 273
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRG 91
G+ G S G+ P G+ +G G
Sbjct: 274 GRAGEKGDEGSPGIRGPQ--GITGPKGATG 301
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G+ G P L G D GP G P L G P G R
Sbjct: 1186 GAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP----GQTGNR 1241
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G G P + G P PP V+ +G +G+ P+G D GP R
Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL L G A PP GP G P L G+ + G +GKRG L
Sbjct: 976 GMPGLKGLKGLPGPAGPP---GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTL 1032
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P P I L+ G S+ G P D G K+G
Sbjct: 1033 GFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKG 1083
Score = 33.9 bits (76), Expect = 0.029
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 8 GEVGLALSPRLVGGASPP-CDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGKR 64
G +G +P L G P G P +G K G L S +G P GP RG
Sbjct: 1292 GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGS---IGPPGPIGPKGPPGVRGDP 1348
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGPESRERKRG 118
G L + + G P PP G G +G G PP G L PC GP + K G
Sbjct: 1349 GTLKIISLPGSPGPP--GTPGEPGMQGEPGPPGPP--GNLGPC--GPRGKPGKDG 1397
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGKR 64
+GE GL +P P G P ++G K RG P L G D GP+ G
Sbjct: 1169 KGETGLLRAP-------PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGA-GSQSPP 98
G+ P G P G G RG+ G+ PP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPP 1256
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE GL + + G PP + GP RG L V P GP G +G
Sbjct: 621 QGEPGLQGTQGVPGAPGPPGEAGP------RGEL--SVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 67 LSVPASLGVPPPPAI-GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGC 119
+P SLG P + G G G G PP P D G + GC
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG----PKGDQGFPGTKGSLGC 722
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G SP G A PP GP+ P L G GP + G RG L
Sbjct: 599 GDPGSPGSPGPAGPAGPP-GYGPQGE---------PGLQGTQGVPGAPGPPGEAGPRGEL 648
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGC----LPPCDGGP 110
SV + PP P G G +G G C LP DG P
Sbjct: 649 SVSTPVPGPPGPP-GPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP 694
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGAS-------PPCDGGPESRGRKRGCLLSPCLVGVASPSCD 54
G+ +G GL SP G P G P +G K L VGV D
Sbjct: 499 GIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG---D 555
Query: 55 DGPKSQRGKRGWLSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPP 98
G + Q G++G +P + G+P P G L G + G Q PP
Sbjct: 556 PGLRGQPGRKGLDGIPGTPGVKGLPGPK--GELALSGEK--GDQGPP 598
Score = 27.3 bits (59), Expect = 2.7
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 8 GEVGLALSPRLVGGASPPC---DGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKR 64
GE GL P L G P GGP + G G + G+
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP-------------------GERGNSGEH 767
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP--CDGGPESRE 114
G + +P G+P P G G RG Q P G PP C GP +
Sbjct: 768 GEIGLPGLPGLPGTP--GNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ 817
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP- 77
+G PP GP G SP L G P D G K +G G + G+P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF 1144
Query: 78 PPAIGVLRSRGGRGAGSQSPPRG 100
P + G + RG +G P G
Sbjct: 1145 PGSPGPMGIRGDQGRDGIPGPAG 1167
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 2 GVLRARGE---VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L GE +G+ P +G PP G P + G++ SP + GV G K
Sbjct: 880 GILGPPGEDGVIGMMGFPGAIGPPGPP--GNPGTPGQRG----SPGIPGVKGQRGTPGAK 933
Query: 59 SQRGKRG 65
++G +G
Sbjct: 934 GEQGDKG 940
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRG 100
GP + G G + P ++G P PP G RG G RG
Sbjct: 883 GPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRG 928
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G+ G P L G D GP G P L G P G R
Sbjct: 1186 GAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP----GQTGNR 1241
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G G P + G P PP V+ +G +G+ P+G D GP R
Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL L G A PP GP G P L G+ + G +GKRG L
Sbjct: 976 GMPGLKGLKGLPGPAGPP---GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTL 1032
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P P I L+ G S+ G P D G K+G
Sbjct: 1033 GFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKG 1083
Score = 33.9 bits (76), Expect = 0.029
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 8 GEVGLALSPRLVGGASPP-CDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGKR 64
G +G +P L G P G P +G K G L S +G P GP RG
Sbjct: 1292 GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGS---IGPPGPIGPKGPPGVRGDP 1348
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGPESRERKRG 118
G L + + G P PP G G +G G PP G L PC GP + K G
Sbjct: 1349 GTLKIISLPGSPGPP--GTPGEPGMQGEPGPPGPP--GNLGPC--GPRGKPGKDG 1397
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGKR 64
+GE GL +P P G P ++G K RG P L G D GP+ G
Sbjct: 1169 KGETGLLRAP-------PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGA-GSQSPP 98
G+ P G P G G RG+ G+ PP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPP 1256
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE GL + + G PP + GP RG L V P GP G +G
Sbjct: 621 QGEPGLQGTQGVPGAPGPPGEAGP------RGEL--SVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 67 LSVPASLGVPPPPAI-GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGC 119
+P SLG P + G G G G PP P D G + GC
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG----PKGDQGFPGTKGSLGC 722
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G SP G A PP GP+ P L G GP + G RG L
Sbjct: 599 GDPGSPGSPGPAGPAGPP-GYGPQGE---------PGLQGTQGVPGAPGPPGEAGPRGEL 648
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGC----LPPCDGGP 110
SV + PP P G G +G G C LP DG P
Sbjct: 649 SVSTPVPGPPGPP-GPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP 694
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGAS-------PPCDGGPESRGRKRGCLLSPCLVGVASPSCD 54
G+ +G GL SP G P G P +G K L VGV D
Sbjct: 499 GIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG---D 555
Query: 55 DGPKSQRGKRGWLSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPP 98
G + Q G++G +P + G+P P G L G + G Q PP
Sbjct: 556 PGLRGQPGRKGLDGIPGTPGVKGLPGPK--GELALSGEK--GDQGPP 598
Score = 27.3 bits (59), Expect = 2.7
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 8 GEVGLALSPRLVGGASPPC---DGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKR 64
GE GL P L G P GGP + G G + G+
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP-------------------GERGNSGEH 767
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP--CDGGPESRE 114
G + +P G+P P G G RG Q P G PP C GP +
Sbjct: 768 GEIGLPGLPGLPGTP--GNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ 817
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP- 77
+G PP GP G SP L G P D G K +G G + G+P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF 1144
Query: 78 PPAIGVLRSRGGRGAGSQSPPRG 100
P + G + RG +G P G
Sbjct: 1145 PGSPGPMGIRGDQGRDGIPGPAG 1167
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 2 GVLRARGE---VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L GE +G+ P +G PP G P + G++ SP + GV G K
Sbjct: 880 GILGPPGEDGVIGMMGFPGAIGPPGPP--GNPGTPGQRG----SPGIPGVKGQRGTPGAK 933
Query: 59 SQRGKRG 65
++G +G
Sbjct: 934 GEQGDKG 940
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRG 100
GP + G G + P ++G P PP G RG G RG
Sbjct: 883 GPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRG 928
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G+ G P L G D GP G P L G P G R
Sbjct: 1186 GAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP----GQTGNR 1241
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G G P + G P PP V+ +G +G+ P+G D GP R
Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL L G A PP GP G P L G+ + G +GKRG L
Sbjct: 976 GMPGLKGLKGLPGPAGPP---GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTL 1032
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P P I L+ G S+ G P D G K+G
Sbjct: 1033 GFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKG 1083
Score = 33.9 bits (76), Expect = 0.029
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 8 GEVGLALSPRLVGGASPP-CDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGKR 64
G +G +P L G P G P +G K G L S +G P GP RG
Sbjct: 1292 GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGS---IGPPGPIGPKGPPGVRGDP 1348
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGPESRERKRG 118
G L + + G P PP G G +G G PP G L PC GP + K G
Sbjct: 1349 GTLKIISLPGSPGPP--GTPGEPGMQGEPGPPGPP--GNLGPC--GPRGKPGKDG 1397
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGKR 64
+GE GL +P P G P ++G K RG P L G D GP+ G
Sbjct: 1169 KGETGLLRAP-------PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGA-GSQSPP 98
G+ P G P G G RG+ G+ PP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPP 1256
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE GL + + G PP + GP RG L V P GP G +G
Sbjct: 621 QGEPGLQGTQGVPGAPGPPGEAGP------RGEL--SVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 67 LSVPASLGVPPPPAI-GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGC 119
+P SLG P + G G G G PP P D G + GC
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG----PKGDQGFPGTKGSLGC 722
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G SP G A PP GP+ P L G GP + G RG L
Sbjct: 599 GDPGSPGSPGPAGPAGPP-GYGPQGE---------PGLQGTQGVPGAPGPPGEAGPRGEL 648
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGC----LPPCDGGP 110
SV + PP P G G +G G C LP DG P
Sbjct: 649 SVSTPVPGPPGPP-GPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP 694
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGAS-------PPCDGGPESRGRKRGCLLSPCLVGVASPSCD 54
G+ +G GL SP G P G P +G K L VGV D
Sbjct: 499 GIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG---D 555
Query: 55 DGPKSQRGKRGWLSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPP 98
G + Q G++G +P + G+P P G L G + G Q PP
Sbjct: 556 PGLRGQPGRKGLDGIPGTPGVKGLPGPK--GELALSGEK--GDQGPP 598
Score = 27.3 bits (59), Expect = 2.7
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 8 GEVGLALSPRLVGGASPPC---DGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKR 64
GE GL P L G P GGP + G G + G+
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP-------------------GERGNSGEH 767
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP--CDGGPESRE 114
G + +P G+P P G G RG Q P G PP C GP +
Sbjct: 768 GEIGLPGLPGLPGTP--GNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ 817
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP- 77
+G PP GP G SP L G P D G K +G G + G+P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF 1144
Query: 78 PPAIGVLRSRGGRGAGSQSPPRG 100
P + G + RG +G P G
Sbjct: 1145 PGSPGPMGIRGDQGRDGIPGPAG 1167
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 2 GVLRARGE---VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L GE +G+ P +G PP G P + G++ SP + GV G K
Sbjct: 880 GILGPPGEDGVIGMMGFPGAIGPPGPP--GNPGTPGQRG----SPGIPGVKGQRGTPGAK 933
Query: 59 SQRGKRG 65
++G +G
Sbjct: 934 GEQGDKG 940
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRG 100
GP + G G + P ++G P PP G RG G RG
Sbjct: 883 GPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRG 928
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G+ G P L G D GP G P L G P G R
Sbjct: 1186 GAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP----GQTGNR 1241
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
G G P + G P PP V+ +G +G+ P+G D GP R
Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL L G A PP GP G P L G+ + G +GKRG L
Sbjct: 976 GMPGLKGLKGLPGPAGPP---GPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTL 1032
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P G P P I L+ G S+ G P D G K+G
Sbjct: 1033 GFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKG 1083
Score = 33.9 bits (76), Expect = 0.029
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 8 GEVGLALSPRLVGGASPP-CDGGPESRGRKR--GCLLSPCLVGVASPSCDDGPKSQRGKR 64
G +G +P L G P G P +G K G L S +G P GP RG
Sbjct: 1292 GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGS---IGPPGPIGPKGPPGVRGDP 1348
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGPESRERKRG 118
G L + + G P PP G G +G G PP G L PC GP + K G
Sbjct: 1349 GTLKIISLPGSPGPP--GTPGEPGMQGEPGPPGPP--GNLGPC--GPRGKPGKDG 1397
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCDDGPKSQRGKR 64
+GE GL +P P G P ++G K RG P L G D GP+ G
Sbjct: 1169 KGETGLLRAP-------PGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGA-GSQSPP 98
G+ P G P G G RG+ G+ PP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPP 1256
Score = 31.6 bits (70), Expect = 0.14
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE GL + + G PP + GP RG L V P GP G +G
Sbjct: 621 QGEPGLQGTQGVPGAPGPPGEAGP------RGEL--SVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 67 LSVPASLGVPPPPAI-GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGC 119
+P SLG P + G G G G PP P D G + GC
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG----PKGDQGFPGTKGSLGC 722
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G SP G A PP GP+ P L G GP + G RG L
Sbjct: 599 GDPGSPGSPGPAGPAGPP-GYGPQGE---------PGLQGTQGVPGAPGPPGEAGPRGEL 648
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGC----LPPCDGGP 110
SV + PP P G G +G G C LP DG P
Sbjct: 649 SVSTPVPGPPGPP-GPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEP 694
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGAS-------PPCDGGPESRGRKRGCLLSPCLVGVASPSCD 54
G+ +G GL SP G P G P +G K L VGV D
Sbjct: 499 GIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG---D 555
Query: 55 DGPKSQRGKRGWLSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPP 98
G + Q G++G +P + G+P P G L G + G Q PP
Sbjct: 556 PGLRGQPGRKGLDGIPGTPGVKGLPGPK--GELALSGEK--GDQGPP 598
Score = 27.3 bits (59), Expect = 2.7
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 8 GEVGLALSPRLVGGASPPC---DGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKR 64
GE GL P L G P GGP + G G + G+
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP-------------------GERGNSGEH 767
Query: 65 GWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP--CDGGPESRE 114
G + +P G+P P G G RG Q P G PP C GP +
Sbjct: 768 GEIGLPGLPGLPGTP--GNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ 817
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP- 77
+G PP GP G SP L G P D G K +G G + G+P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF 1144
Query: 78 PPAIGVLRSRGGRGAGSQSPPRG 100
P + G + RG +G P G
Sbjct: 1145 PGSPGPMGIRGDQGRDGIPGPAG 1167
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 2 GVLRARGE---VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L GE +G+ P +G PP G P + G++ SP + GV G K
Sbjct: 880 GILGPPGEDGVIGMMGFPGAIGPPGPP--GNPGTPGQRG----SPGIPGVKGQRGTPGAK 933
Query: 59 SQRGKRG 65
++G +G
Sbjct: 934 GEQGDKG 940
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRG 100
GP + G G + P ++G P PP G RG G RG
Sbjct: 883 GPPGEDGVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRG 928
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 38.1 bits (87), Expect = 0.002
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + A G+ G P G+ P GP R KRG P G D G + R
Sbjct: 1089 GPVGAPGDAGQRGDP----GSRGPI--GPPGRAGKRGL---PGPQGPRGDKGDHGDRGDR 1139
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
G++G G+P PP G +G G PRG PP GP +E G L
Sbjct: 1140 GQKGHRGFTGLQGLPGPP--GPNGEQGSAGIPGPFGPRG---PPGPVGPSGKEGNPGPL 1193
Score = 35.4 bits (80), Expect = 0.010
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G A+G G + G A PP GP+ +G P GV + GPK +
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEP 485
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRG-------AGSQSPPRGGCLPPCDG--GPES 112
G G + +G PP G RG G G + P P DG GP+
Sbjct: 486 GPHG---IQGPIG--PPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG 540
Query: 113 RERKRG 118
+ +RG
Sbjct: 541 AQGERG 546
Score = 34.7 bits (78), Expect = 0.017
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
MG L G G +P + G A P GPE +RG + GP
Sbjct: 368 MGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRG---------------ETGPPGP 412
Query: 61 RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G +P ++G P ++G G+ S P G PP GP+ +G
Sbjct: 413 VGSPG---LPGAIGTDGTPG-----AKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQG 462
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL G P GP+ G P L G + + G + GK G L
Sbjct: 531 GSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPL 590
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
P G P PP G + RG G+ P+G P
Sbjct: 591 GAPGEDGRPGPP--GSIGIRGQPGSMGLPGPKGSSGDP 626
Score = 30.8 bits (68), Expect = 0.25
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 20 GGASPPCDGGPESRGR-----KRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLG 74
G A PP GGP +G + G P G G QRG+RG +P G
Sbjct: 957 GPAGPP--GGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAG 1014
Query: 75 VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
P +G + G +G P G P + GPE
Sbjct: 1015 T--PGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPE 1049
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/109 (25%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ RGE G G PP G + +G P VG P + G +R
Sbjct: 660 GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGER 719
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
G+ G +P G+ GG G G P D GP
Sbjct: 720 GEPGITGLPGEKGM-----------AGGHGPDGPKGSPGPSGTPGDTGP 757
Score = 30.0 bits (66), Expect = 0.42
Identities = 34/111 (30%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G LVG P G P SRG VG A P DG +G+ G
Sbjct: 813 GEKGEPGPRGLVG--PPGSRGNPGSRGENG----PTGAVGFAGPQGPDGQPGVKGEPGEP 866
Query: 68 SVPASLGVPPPPAI----------GVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G P P + GV +GGR G+Q PP P G
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGR--GTQGPPGATGFPGSAG 915
Score = 28.5 bits (62), Expect = 1.2
Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 16/124 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV G++G +P G PP G RG+ P +G+ P G +
Sbjct: 579 GVQGPEGKLGPLGAPGEDGRPGPP--GSIGIRGQ-------PGSMGLPGPKGSSGDPGKP 629
Query: 62 GKRGWLSVPASLGVP-------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRE 114
G+ G VP G P P +G G RG P G P GP
Sbjct: 630 GEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEG 689
Query: 115 RKRG 118
K G
Sbjct: 690 GKPG 693
Score = 28.5 bits (62), Expect = 1.2
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + RG+ G P G + P G G +P G PS GP
Sbjct: 603 GSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA 662
Query: 62 GKRGWLSVPASL---GVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G+RG P G+P PP G G G + +G P GP +RG
Sbjct: 663 GERGEQGPPGPTGFQGLPGPP--------GPPGEGGKPGDQGVPGDPGAVGPLGPRGERG 714
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLS---------------PCLVGVASPS 52
GE G+ P G P GP+ R ++ P VG P
Sbjct: 162 GEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPR 221
Query: 53 CDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRG 91
G + Q+G G P G P P +G + SRG G
Sbjct: 222 GPQGLQGQQGGAGPTGPPGEPGDPGP--MGPIGSRGPEG 258
Score = 27.7 bits (60), Expect = 2.1
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 10/109 (9%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G P + GPE G VG D GP G +G P +G P
Sbjct: 1038 GSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDA 1097
Query: 80 A----------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
IG G RG PRG D G ++ RG
Sbjct: 1098 GQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRG 1146
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE GL + G P G P S+G + G P GP+ +G G
Sbjct: 115 KGEPGLVPVVTGIRGRPGPA-GPPGSQGPR----------GERGPKGRPGPRGPQGIDGE 163
Query: 67 LSVPASLGVPPPP 79
VP G P PP
Sbjct: 164 PGVPGQPGAPGPP 176
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 47 GVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPC 106
G+ P GP G G P LG PP + RG G P G PP
Sbjct: 1167 GIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGV-----RGSVGEAGPEGPPGEPGPPG 1221
Query: 107 DGGP 110
GP
Sbjct: 1222 PPGP 1225
Score = 26.9 bits (58), Expect = 3.6
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP-P 78
G PP G RG S L G + GP G +G P G P P
Sbjct: 510 GTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLP 569
Query: 79 PAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
A G+ + G +G + P G P DG P
Sbjct: 570 GARGLTGNPGVQGPEGKLGPLGA--PGEDGRP 599
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLS------PCLVGVASPSCDDGPKSQR 61
G VG P G A PP GP RG + P L+G+ P + G K R
Sbjct: 1286 GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1345
Query: 62 GKRGWLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P G + P A G + G G + P+G GGP+ + +G
Sbjct: 1346 GLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1403
Score = 36.2 bits (82), Expect = 0.006
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 38/130 (29%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+GV RGEVG+ P G P GP+ R P+ D GP
Sbjct: 664 IGVKGDRGEVGV---PGSRGEDGPE---GPKGR---------------TGPTGDPGPPGL 702
Query: 61 RGKRGWLSVP------------ASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G++G L VP SLG P P G +G RG +S PRG P
Sbjct: 703 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP--GASGEKGARGLSGKSGPRGERGPT--- 757
Query: 109 GPESRERKRG 118
GP + RG
Sbjct: 758 GPRGQRGPRG 767
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G P D GP+ G P G P DG K RG+ G
Sbjct: 1153 KGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1212
Query: 67 LSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPPRGG 101
P S G PP G L RG G+ +GG
Sbjct: 1213 PGQPGSPGPTGENGPP--GPLGKRGPAGSPGSEGRQGG 1248
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ +GE + LV G PP GP G + P + G P D G +R
Sbjct: 294 GLKGEKGEPAVLEPGMLVEG--PPGPEGPA------GLIGPPGIQGNPGPVGDPG---ER 342
Query: 62 GKRGWLSVPASLGVPPPPAIG-VLRSRGGRGAGSQSP 97
G G +P S G P PP +L R G G G + P
Sbjct: 343 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 379
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
VG PP GP G A P+ DGP+ G G L P G P
Sbjct: 1087 VGPMGPPGPPGPR---------------GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1131
Query: 77 -PPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P I GV RG RG +S G PP GP + +G
Sbjct: 1132 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKG 1178
Score = 33.5 bits (75), Expect = 0.038
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P VG PP + G G P GV GP+ +RG++G P G
Sbjct: 1114 PGGVGNLGPPGEKGEPGESGSPGIQGEP---GVK------GPRGERGEKGESGQPGEPGP 1164
Query: 76 PPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P P G G +G G PP +GGP ++ +G
Sbjct: 1165 PGPK--GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKG 1205
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G + + GG P G +G P G P DG G+RG
Sbjct: 766 RGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE 825
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+ G P PP GV+ +G G RG PP G +
Sbjct: 826 VGFQGKTGPPGPP--GVVGPQGAAGETGPMGERGHPGPPGPPGEQ 868
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSP---CLVGVASPSCDDGPKSQRG 62
A+G+ G P G P + GP KRG SP G D G G
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Query: 63 KRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPP 105
K G + G P P + G + +G GA Q+ P G PP
Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309
Score = 29.6 bits (65), Expect = 0.55
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 2 GVLRARGEVGLALSPR---LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L +G G+ P + G P GP+ G +P G+ P GP
Sbjct: 524 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 583
Query: 59 SQRGKRGWLSVPASLGVPPPPA----IGVLRSRGGRG-AGSQSP-----PRG 100
++G +G +P G PP G ++G +G +G Q P PRG
Sbjct: 584 GEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 635
Score = 29.3 bits (64), Expect = 0.72
Identities = 38/138 (27%), Positives = 45/138 (32%), Gaps = 25/138 (18%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + GE G P L G P DG P G++ P G PS GP
Sbjct: 578 GAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG----PPGTKGNQGPSGPQGPLGYP 631
Query: 62 GKRGWLSVPASLGVPPPPA-------------IGVLRSRG------GRGAGSQSPPRGGC 102
G RG V G+ IGV RG RG P+G
Sbjct: 632 GPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT 691
Query: 103 LPPCDGGPESRERKRGCL 120
P D GP ++G L
Sbjct: 692 GPTGDPGPPGLMGEKGKL 709
Score = 28.9 bits (63), Expect = 0.94
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP G R G P GV DG G++G + G+P PP
Sbjct: 440 GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPP 499
Query: 80 AIGVLRSRGG----RGAGSQSPPRG 100
R G RG +S PRG
Sbjct: 500 GEDGERGDDGEIGPRGLPGESGPRG 524
Score = 28.9 bits (63), Expect = 0.94
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G A P L G P GP +RG S +G GP G++G
Sbjct: 904 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG- 962
Query: 67 LSVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
VP G P +G+ G G + +G P G + + + G
Sbjct: 963 --VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 1019
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
+G P + GP +G P GV GPK G +G P G P
Sbjct: 511 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570
Query: 77 -----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P AIG +G +G G PP G E +G
Sbjct: 571 QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKG 617
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGEVG G PP GP+ + G + G P + G GK G
Sbjct: 823 RGEVGFQGK---TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGT 879
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
P G P P G+ + GG G P G PP GP +
Sbjct: 880 KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---PP---GPAGSPGE 933
Query: 117 RG 118
RG
Sbjct: 934 RG 935
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPA----IGVL 84
GP R +G + P G + +DG K + G G + G PP IG +
Sbjct: 971 GPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPV 1030
Query: 85 RSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G GA + RG P G + E RG
Sbjct: 1031 GQPGAAGADGEPGARG---PQGHFGAKGDEGTRG 1061
Score = 26.2 bits (56), Expect = 6.1
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 28 GGPESRGR-----KRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP------ 76
G P RG K G P +VG + + GP +RG G P G+P
Sbjct: 818 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877
Query: 77 -------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
PP A G G RG + RG LP GGP
Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGE---RG--LPGTAGGP 913
Score = 25.8 bits (55), Expect = 7.9
Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 39/129 (30%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
MG G +G SP L G + D GP+ G P GP +
Sbjct: 406 MGYTGRPGPLGQPGSPGLKGESG---DLGPQ---------------GPRGPQGLTGPPGK 447
Query: 61 RGKRGWLSVPASLGVPPPPAI----------GVLRSRGGRG-AGSQSPPRGGCLPPCDGG 109
G+RG + G+P P + G+ +G RG G+Q P G
Sbjct: 448 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP----------G 497
Query: 110 PESRERKRG 118
P + +RG
Sbjct: 498 PPGEDGERG 506
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLS------PCLVGVASPSCDDGPKSQR 61
G VG P G A PP GP RG + P L+G+ P + G K R
Sbjct: 1265 GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1324
Query: 62 GKRGWLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P G + P A G + G G + P+G GGP+ + +G
Sbjct: 1325 GLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1382
Score = 36.2 bits (82), Expect = 0.006
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 38/130 (29%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+GV RGEVG+ P G P GP+ R P+ D GP
Sbjct: 643 IGVKGDRGEVGV---PGSRGEDGPE---GPKGR---------------TGPTGDPGPPGL 681
Query: 61 RGKRGWLSVP------------ASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G++G L VP SLG P P G +G RG +S PRG P
Sbjct: 682 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP--GASGEKGARGLSGKSGPRGERGPT--- 736
Query: 109 GPESRERKRG 118
GP + RG
Sbjct: 737 GPRGQRGPRG 746
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G P D GP+ G P G P DG K RG+ G
Sbjct: 1132 KGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1191
Query: 67 LSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPPRGG 101
P S G PP G L RG G+ +GG
Sbjct: 1192 PGQPGSPGPTGENGPP--GPLGKRGPAGSPGSEGRQGG 1227
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ +GE + LV G PP GP G + P + G P D G +R
Sbjct: 273 GLKGEKGEPAVLEPGMLVEG--PPGPEGPA------GLIGPPGIQGNPGPVGDPG---ER 321
Query: 62 GKRGWLSVPASLGVPPPPAIG-VLRSRGGRGAGSQSP 97
G G +P S G P PP +L R G G G + P
Sbjct: 322 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 358
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
VG PP GP G A P+ DGP+ G G L P G P
Sbjct: 1066 VGPMGPPGPPGPR---------------GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1110
Query: 77 -PPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P I GV RG RG +S G PP GP + +G
Sbjct: 1111 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKG 1157
Score = 33.5 bits (75), Expect = 0.038
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P VG PP + G G P GV GP+ +RG++G P G
Sbjct: 1093 PGGVGNLGPPGEKGEPGESGSPGIQGEP---GVK------GPRGERGEKGESGQPGEPGP 1143
Query: 76 PPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P P G G +G G PP +GGP ++ +G
Sbjct: 1144 PGPK--GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKG 1184
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G + + GG P G +G P G P DG G+RG
Sbjct: 745 RGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE 804
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+ G P PP GV+ +G G RG PP G +
Sbjct: 805 VGFQGKTGPPGPP--GVVGPQGAAGETGPMGERGHPGPPGPPGEQ 847
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSP---CLVGVASPSCDDGPKSQRG 62
A+G+ G P G P + GP KRG SP G D G G
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
Query: 63 KRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPP 105
K G + G P P + G + +G GA Q+ P G PP
Sbjct: 1242 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288
Score = 29.6 bits (65), Expect = 0.55
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 2 GVLRARGEVGLALSPR---LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L +G G+ P + G P GP+ G +P G+ P GP
Sbjct: 503 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 562
Query: 59 SQRGKRGWLSVPASLGVPPPPA----IGVLRSRGGRG-AGSQSP-----PRG 100
++G +G +P G PP G ++G +G +G Q P PRG
Sbjct: 563 GEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 614
Score = 29.3 bits (64), Expect = 0.72
Identities = 38/138 (27%), Positives = 45/138 (32%), Gaps = 25/138 (18%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + GE G P L G P DG P G++ P G PS GP
Sbjct: 557 GAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG----PPGTKGNQGPSGPQGPLGYP 610
Query: 62 GKRGWLSVPASLGVPPPPA-------------IGVLRSRG------GRGAGSQSPPRGGC 102
G RG V G+ IGV RG RG P+G
Sbjct: 611 GPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT 670
Query: 103 LPPCDGGPESRERKRGCL 120
P D GP ++G L
Sbjct: 671 GPTGDPGPPGLMGEKGKL 688
Score = 28.9 bits (63), Expect = 0.94
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP G R G P GV DG G++G + G+P PP
Sbjct: 419 GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPP 478
Query: 80 AIGVLRSRGG----RGAGSQSPPRG 100
R G RG +S PRG
Sbjct: 479 GEDGERGDDGEIGPRGLPGESGPRG 503
Score = 28.9 bits (63), Expect = 0.94
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G A P L G P GP +RG S +G GP G++G
Sbjct: 883 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG- 941
Query: 67 LSVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
VP G P +G+ G G + +G P G + + + G
Sbjct: 942 --VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 998
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
+G P + GP +G P GV GPK G +G P G P
Sbjct: 490 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 549
Query: 77 -----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P AIG +G +G G PP G E +G
Sbjct: 550 QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKG 596
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGEVG G PP GP+ + G + G P + G GK G
Sbjct: 802 RGEVGFQGK---TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGT 858
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
P G P P G+ + GG G P G PP GP +
Sbjct: 859 KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---PP---GPAGSPGE 912
Query: 117 RG 118
RG
Sbjct: 913 RG 914
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPA----IGVL 84
GP R +G + P G + +DG K + G G + G PP IG +
Sbjct: 950 GPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPV 1009
Query: 85 RSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G GA + RG P G + E RG
Sbjct: 1010 GQPGAAGADGEPGARG---PQGHFGAKGDEGTRG 1040
Score = 26.2 bits (56), Expect = 6.1
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 28 GGPESRGR-----KRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP------ 76
G P RG K G P +VG + + GP +RG G P G+P
Sbjct: 797 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856
Query: 77 -------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
PP A G G RG + RG LP GGP
Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGE---RG--LPGTAGGP 892
Score = 25.8 bits (55), Expect = 7.9
Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 39/129 (30%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
MG G +G SP L G + D GP+ G P GP +
Sbjct: 385 MGYTGRPGPLGQPGSPGLKGESG---DLGPQ---------------GPRGPQGLTGPPGK 426
Query: 61 RGKRGWLSVPASLGVPPPPAI----------GVLRSRGGRG-AGSQSPPRGGCLPPCDGG 109
G+RG + G+P P + G+ +G RG G+Q P G
Sbjct: 427 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP----------G 476
Query: 110 PESRERKRG 118
P + +RG
Sbjct: 477 PPGEDGERG 485
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLS------PCLVGVASPSCDDGPKSQR 61
G VG P G A PP GP RG + P L+G+ P + G K R
Sbjct: 1372 GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDR 1431
Query: 62 GKRGWLSVPASLG-VPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P G + P A G + G G + P+G GGP+ + +G
Sbjct: 1432 GLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1489
Score = 36.2 bits (82), Expect = 0.006
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 38/130 (29%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+GV RGEVG+ P G P GP+ R P+ D GP
Sbjct: 750 IGVKGDRGEVGV---PGSRGEDGPE---GPKGR---------------TGPTGDPGPPGL 788
Query: 61 RGKRGWLSVP------------ASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G++G L VP SLG P P G +G RG +S PRG P
Sbjct: 789 MGEKGKLGVPGLPGYPGRQGPKGSLGFPGFP--GASGEKGARGLSGKSGPRGERGPT--- 843
Query: 109 GPESRERKRG 118
GP + RG
Sbjct: 844 GPRGQRGPRG 853
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P G P D GP+ G P G P DG K RG+ G
Sbjct: 1239 KGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGE 1298
Query: 67 LSVPAS---LGVPPPPAIGVLRSRGGRGAGSQSPPRGG 101
P S G PP G L RG G+ +GG
Sbjct: 1299 PGQPGSPGPTGENGPP--GPLGKRGPAGSPGSEGRQGG 1334
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ +GE + LV G PP GP G + P + G P D G +R
Sbjct: 380 GLKGEKGEPAVLEPGMLVEG--PPGPEGPA------GLIGPPGIQGNPGPVGDPG---ER 428
Query: 62 GKRGWLSVPASLGVPPPPAIG-VLRSRGGRGAGSQSP 97
G G +P S G P PP +L R G G G + P
Sbjct: 429 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 465
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
VG PP GP G A P+ DGP+ G G L P G P
Sbjct: 1173 VGPMGPPGPPGPR---------------GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGE 1217
Query: 77 -PPPAI----GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P I GV RG RG +S G PP GP + +G
Sbjct: 1218 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKG 1264
Score = 33.5 bits (75), Expect = 0.038
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P VG PP + G G P GV GP+ +RG++G P G
Sbjct: 1200 PGGVGNLGPPGEKGEPGESGSPGIQGEP---GVK------GPRGERGEKGESGQPGEPGP 1250
Query: 76 PPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P P G G +G G PP +GGP ++ +G
Sbjct: 1251 PGPK--GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKG 1291
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G + + GG P G +G P G P DG G+RG
Sbjct: 852 RGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE 911
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+ G P PP GV+ +G G RG PP G +
Sbjct: 912 VGFQGKTGPPGPP--GVVGPQGAAGETGPMGERGHPGPPGPPGEQ 954
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSP---CLVGVASPSCDDGPKSQRG 62
A+G+ G P G P + GP KRG SP G D G G
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
Query: 63 KRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPP 105
K G + G P P + G + +G GA Q+ P G PP
Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395
Score = 29.6 bits (65), Expect = 0.55
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 2 GVLRARGEVGLALSPR---LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L +G G+ P + G P GP+ G +P G+ P GP
Sbjct: 610 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 669
Query: 59 SQRGKRGWLSVPASLGVPPPPA----IGVLRSRGGRG-AGSQSP-----PRG 100
++G +G +P G PP G ++G +G +G Q P PRG
Sbjct: 670 GEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 721
Score = 29.3 bits (64), Expect = 0.72
Identities = 38/138 (27%), Positives = 45/138 (32%), Gaps = 25/138 (18%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + GE G P L G P DG P G++ P G PS GP
Sbjct: 664 GAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG----PPGTKGNQGPSGPQGPLGYP 717
Query: 62 GKRGWLSVPASLGVPPPPA-------------IGVLRSRG------GRGAGSQSPPRGGC 102
G RG V G+ IGV RG RG P+G
Sbjct: 718 GPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRT 777
Query: 103 LPPCDGGPESRERKRGCL 120
P D GP ++G L
Sbjct: 778 GPTGDPGPPGLMGEKGKL 795
Score = 28.9 bits (63), Expect = 0.94
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP G R G P GV DG G++G + G+P PP
Sbjct: 526 GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPP 585
Query: 80 AIGVLRSRGG----RGAGSQSPPRG 100
R G RG +S PRG
Sbjct: 586 GEDGERGDDGEIGPRGLPGESGPRG 610
Score = 28.9 bits (63), Expect = 0.94
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG G A P L G P GP +RG S +G GP G++G
Sbjct: 990 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG- 1048
Query: 67 LSVPASLGVPPPPA-------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
VP G P +G+ G G + +G P G + + + G
Sbjct: 1049 --VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 1105
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP-- 76
+G P + GP +G P GV GPK G +G P G P
Sbjct: 597 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 656
Query: 77 -----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P AIG +G +G G PP G E +G
Sbjct: 657 QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKG 703
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGEVG G PP GP+ + G + G P + G GK G
Sbjct: 909 RGEVGFQGK---TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGT 965
Query: 67 LSVPASLGVPP----------PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
P G P P G+ + GG G P G PP GP +
Sbjct: 966 KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---PP---GPAGSPGE 1019
Query: 117 RG 118
RG
Sbjct: 1020 RG 1021
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPA----IGVL 84
GP R +G + P G + +DG K + G G + G PP IG +
Sbjct: 1057 GPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPV 1116
Query: 85 RSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G GA + RG P G + E RG
Sbjct: 1117 GQPGAAGADGEPGARG---PQGHFGAKGDEGTRG 1147
Score = 26.2 bits (56), Expect = 6.1
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 28 GGPESRGR-----KRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP------ 76
G P RG K G P +VG + + GP +RG G P G+P
Sbjct: 904 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963
Query: 77 -------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
PP A G G RG + RG LP GGP
Sbjct: 964 GTKGDPGPPGAPGKDGPAGLRGFPGE---RG--LPGTAGGP 999
Score = 25.8 bits (55), Expect = 7.9
Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 39/129 (30%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
MG G +G SP L G + D GP+ G P GP +
Sbjct: 492 MGYTGRPGPLGQPGSPGLKGESG---DLGPQ---------------GPRGPQGLTGPPGK 533
Query: 61 RGKRGWLSVPASLGVPPPPAI----------GVLRSRGGRG-AGSQSPPRGGCLPPCDGG 109
G+RG + G+P P + G+ +G RG G+Q P G
Sbjct: 534 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP----------G 583
Query: 110 PESRERKRG 118
P + +RG
Sbjct: 584 PPGEDGERG 592
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G A SP G A + G E G L G G K RG G
Sbjct: 541 KGETGQAGSPGEKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGL 600
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P +GVP P G RG +G + P G P GP + RG
Sbjct: 601 PGTPGPIGVPGP--AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRG 650
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P L G PP G P G+K +G+ P DG K RGK G + P G
Sbjct: 466 PGLPGQIGPP--GAPGIPGQKGE-------IGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 516
Query: 76 P----PPPAIGVLRSRGGRGAGSQSPPRG 100
P PP GV G G+ + +G
Sbjct: 517 PGKDGPP---GVKGENGHPGSPGEKGEKG 542
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK---SQRGKRGWLSVPASLGVP 76
G PP GP G + P L G P D G + ++G+RG +P G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 PPPAIGVLRSRGGRGAGSQSPPRG 100
P I V +G G +G
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKG 356
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPES-RGRK-----RGCLLSPCLVGVASPSCDDGPKSQ 60
RG +GL +P +G P GP+ RG K G + L G+ P D G + +
Sbjct: 595 RGPLGLPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGE 651
Query: 61 RGKRG 65
RGK+G
Sbjct: 652 RGKKG 656
Score = 26.9 bits (58), Expect = 3.6
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 44/147 (29%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRG-----------RKRGCLLSPCLVGVAS 50
G + + G+ GL++ +G PP G P +RG K G +G+
Sbjct: 143 GRVGSPGDAGLSI----IGPRGPP--GQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTG 196
Query: 51 PSCDDGPKSQRGKRGWL----------SVPASLG-----------------VPPPPAIGV 83
P GP+ Q+G++G S+PA+L + PPP I
Sbjct: 197 PPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKR 256
Query: 84 LRSRGGRGAGSQSPPRGGCLPPCDGGP 110
+G + S P G PP GP
Sbjct: 257 RTFQGEQSQASIQGPPGPPGPPGPSGP 283
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 38.1 bits (87), Expect = 0.002
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGR--------------KRGCLLSPCLVGVASPS 52
RG GL SP LVGG PP G P RG G + L G+
Sbjct: 659 RGPAGLDGSPGLVGGTGPP--GFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDK 716
Query: 53 CDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+ G + G+ G+ ++G+P PP + RG G Q+ G P GPE
Sbjct: 717 GEQGTAGELGEPGYPGDKGAVGLPGPPGM-----RGKSGPSGQTGDPGLQGPSGPPGPE 770
Score = 30.4 bits (67), Expect = 0.32
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 23/99 (23%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G L +GE G+ +G PP GP G L P VG P GPK QR
Sbjct: 879 GPLGPQGEKGV------MGYPGPPGVPGPI------GPLGLPGHVGARGPPGSQGPKGQR 926
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
G RG P +G +G +G RG
Sbjct: 927 GSRG-----------PDGLLGEQGIQGAKGEKGDQGKRG 954
Score = 27.3 bits (59), Expect = 2.7
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G A P G D G + + G + P VG+ + G + G G
Sbjct: 825 GQKGYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQ 884
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+G P PP GV G G RG PP GP+ + RG
Sbjct: 885 GEKGVMGYPGPP--GVPGPIGPLGLPGHVGARG---PPGSQGPKGQRGSRG 930
Score = 26.9 bits (58), Expect = 3.6
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCD---DGP 57
+G L G+ GL +VG P G P +G K G + VG P GP
Sbjct: 1088 IGPLGRSGQTGLPGPEGIVG--IPGQRGRPGKKGDK-GQIGPTGEVGSRGPPGKIGKSGP 1144
Query: 58 KSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSP-PRG 100
K RG RG + +G P I R G+ S P P+G
Sbjct: 1145 KGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKG 1188
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 47 GVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G+ P+ GP+ ++G RG G P PP
Sbjct: 1438 GIIGPTGRTGPRGEKGFRGETGPQGPRGQPGPP 1470
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 47 GVASPSCDDGPKSQRGKRG-----WLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGG 101
G+ P D GP+ RG++G + +P S G+P A+G+ S G G P G
Sbjct: 1063 GLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGTSALGLPGSPGAPGPQGPPGPSGR 1122
Query: 102 CLP 104
C P
Sbjct: 1123 CNP 1125
Score = 33.1 bits (74), Expect = 0.050
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPP 78
+G PP G + G P +G+ P G + QRG+RG P G P P
Sbjct: 366 LGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGP 425
Query: 79 P 79
P
Sbjct: 426 P 426
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 45 LVGVASPSCDDGPKSQRGKRGWLSVPA---SLGVPPPPAIGVLRSRGGRGAGSQSPPRGG 101
L G P GPK ++G G PA SLG+ P G G RG ++ P G
Sbjct: 362 LKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQ--GPPGKEGQRGRRGKTGPPGK 419
Query: 102 CLPPCDGGP 110
PP GP
Sbjct: 420 PGPPGPPGP 428
Score = 30.0 bits (66), Expect = 0.42
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP GP+ G L P G+ GP+ +G+RG V S G P
Sbjct: 565 GIIGPPGLPGPKGEAGPPGKSL-PGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQ 623
Query: 80 AIGVLRSRGGRGAGSQ---SPPRGGCLPPCDGGP 110
IG+ G +G + PRG LP G P
Sbjct: 624 GIGIPGRTGAQGPAGEPGIQGPRG--LPGLPGTP 655
Score = 29.6 bits (65), Expect = 0.55
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 19 VGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPP 78
VG P GP + G P G+ D GPK +RG +G S G
Sbjct: 910 VGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGK 969
Query: 79 P-------AIGVLRSRGGRGA----GSQSPPRGGCLP 104
P AIG + G +G+ G Q PP +P
Sbjct: 970 PGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIP 1006
Score = 28.9 bits (63), Expect = 0.94
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 47 GVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAI-GVLRSRGG 89
G P +G + +RGK G P G P PP I G+ ++ GG
Sbjct: 397 GPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGG 440
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 21/81 (25%)
Query: 55 DGPKSQRGKRGWLSVPAS------LGVP----------PPPAIGVLRSRGGRGA----GS 94
+GPK +G+RG+ +P G+P PP +G G GA GS
Sbjct: 743 EGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGS 802
Query: 95 QSPPRGGCLPPCDGGPESRER 115
PP G PP G ER
Sbjct: 803 DGPP-GKPGPPGPPGIPFNER 822
Score = 26.9 bits (58), Expect = 3.6
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 8 GEVGLALSPRLVGGASPPCDGG-PESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
GE GL +P G P + G P G + P +G+ + GP + G +G
Sbjct: 588 GEPGLDGNPGAPGPRGPKGERGLPGVHGSPGD--IGPQGIGIPGRTGAQGPAGEPGIQGP 645
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPP 98
+P G P P + R G+ G PP
Sbjct: 646 RGLPGLPGTPGTPGNDGVPGRDGK-PGLPGPP 676
Score = 26.6 bits (57), Expect = 4.6
Identities = 35/119 (29%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDD--GPKS 59
G A+GE G P G PP E G L GV PS GP
Sbjct: 792 GPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSS---LYKIKGGVNVPSYPGPPGPPG 848
Query: 60 QRGKRGWLSVPASLGVPPPPAI-GVLRSRGGRG----AGSQSPPRGGCLPPCDGGPESR 113
+G G + P ++G+P GV RG G AG P P G P R
Sbjct: 849 PKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGER 907
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P G PP G + G + P L G D GP G G P G
Sbjct: 838 PSYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKP---GA 894
Query: 76 PPPPAIGVLRSRGGRG 91
P PP GV G RG
Sbjct: 895 PGPP--GVPGEPGERG 908
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ +G++G G A PP GP +G + L G P D G
Sbjct: 1220 GIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGID 1279
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G P +G P PP G G P G P G E RE ++G
Sbjct: 1280 GSPGEKGDPGDVGGPGPP--------GASGEPGAPGPPGKRGPSGHMGREGREGEKG 1328
Score = 36.6 bits (83), Expect = 0.004
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 7 RGEVGLALSPRLVGGASPPCD-------------GGPESRGRK--RGCLLSPCLVGVASP 51
RG VG+ P L G PP + G P RG + G +P L G
Sbjct: 1138 RGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQ 1197
Query: 52 SCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
G K +RG G P + G+P P +G G S P G PP GP
Sbjct: 1198 PGAVGEKGERGDAGDPGPPGAPGIPGP--------KGDIGEKGDSGPSGAAGPPGKKGPP 1249
Query: 112 SRERKRG 118
+ +G
Sbjct: 1250 GEDGAKG 1256
Score = 34.3 bits (77), Expect = 0.022
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPC---DGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G+L A G++G P +G + P D GP+ G L+G+ P + G K
Sbjct: 1370 GLLGAPGQMG---PPGPLGPSGLPGLKGDTGPKGEKGHIG------LIGLIGPPGEAGEK 1420
Query: 59 SQRGKRGWLSVPASLGVP-------------PPPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
+G G P G P PP G L +G +G+ PRG P
Sbjct: 1421 GDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPA 1480
Query: 106 CDGGP 110
GP
Sbjct: 1481 GPPGP 1485
Score = 33.5 bits (75), Expect = 0.038
Identities = 36/124 (29%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGK---- 63
G G A P G P GP R G +P G P + GP Q+G
Sbjct: 590 GPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQ 649
Query: 64 -----RGWLSVPASLGVPPPPAI-GVLRSRGGRG-AGSQSP--PRGGCLPPCDGGPESRE 114
+G + P G P P I G+ S G G G + P +G PP GP
Sbjct: 650 GLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYP 709
Query: 115 RKRG 118
RG
Sbjct: 710 GPRG 713
Score = 33.5 bits (75), Expect = 0.038
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+G+VGL G P + GPE G K G A + ++GP G++G
Sbjct: 739 KGDVGLKGDQGKPGAPGPRGEDGPE--GPK----------GQAGQAGEEGPPGSAGEKGK 786
Query: 67 LSVPASLGVPPPPA----------IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
L VP G P P +G + +G G Q G PP G +
Sbjct: 787 LGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGA 846
Query: 117 RG 118
G
Sbjct: 847 TG 848
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G P +G PP GP +G + +P G D GP Q G RG
Sbjct: 1049 GPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPA 1108
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
P PP A G RG G Q G
Sbjct: 1109 GHPG-----PPGADGAQGRRGPPGLFGQKGDDG 1136
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 18 LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPP 77
L G PP G +RG L +G+ S +GP GK+G S G
Sbjct: 993 LKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKG------SRGERG 1046
Query: 78 PPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
PP G G P G PP GP E +G
Sbjct: 1047 PP--------GPTGKDGIPGPLGPLGPPGAAGPSGEEGDKG 1079
Score = 30.8 bits (68), Expect = 0.25
Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 1 MGVLRARGEVGLALSPRLVG--GASPPCDG----GPESRGRKRGCLLSPCLVGVASPSCD 54
+G+ G VGL P L G GA P GP + G + P G D
Sbjct: 484 VGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGD 543
Query: 55 DGPKSQRGKRGWLSVPAS---------LGVPPPPA----IGVLRSRGGRGAGSQSPPRGG 101
GPK RG G +P +G P PP G G G + PRG
Sbjct: 544 TGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGL 603
Query: 102 CLPPCDGGPESR 113
P GP R
Sbjct: 604 LGPRGSPGPTGR 615
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/79 (30%), Positives = 27/79 (34%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+G++ GE G L G PP G G L P GVA P G K
Sbjct: 1408 IGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGS 1467
Query: 61 RGKRGWLSVPASLGVPPPP 79
G G G P PP
Sbjct: 1468 PGSMGPRGDTGPAGPPGPP 1486
Score = 27.7 bits (60), Expect = 2.1
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGK--- 63
+G+VG +P G D GP + RG P G GP G+
Sbjct: 1078 KGDVG---APGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGD 1134
Query: 64 ---RGWLSV---PASLGVPPPPA----IGVLRSRGGRGAGSQSPPRG 100
RG++ V P G+P PP +G + S G GA P+G
Sbjct: 1135 DGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQG 1181
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 19 VGGASPPCDGGPES-RG-----RKRGCLLSPCLVGVASP---------SCDDGPKSQRGK 63
+G PP GPE RG + G L +P +G P D GPK ++G
Sbjct: 1345 MGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGH 1404
Query: 64 RGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPP 105
G + + + PP G +G G P+G PP
Sbjct: 1405 IGLIGL-----IGPPGEAGEKGDQGLPGVQGPPGPKGDPGPP 1441
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+G + +G+ G P L G PP SRG + G + GPK
Sbjct: 811 LGPIGEKGKSGKTGQPGLEGERGPP-----GSRGER----------GQPGATGQPGPKGD 855
Query: 61 RGKRGWLSVPASLGVP 76
G+ G +P G+P
Sbjct: 856 VGQDGAPGIPGEKGLP 871
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.4 bits (85), Expect = 0.003
Identities = 42/138 (30%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGV------------A 49
G A G G+A +P L G P G RG + P G A
Sbjct: 307 GAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSA 366
Query: 50 SPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRG-------AGSQSPP--RG 100
P GP + GKRG S G P PP G+ S G RG AG PP RG
Sbjct: 367 GPQGPPGPSGEEGKRGPNGEAGSAGPPGPP--GLRGSPGSRGLPGADGRAGVMGPPGSRG 424
Query: 101 GCLPPCDGGPESRERKRG 118
P GP + G
Sbjct: 425 ASGPAGVRGPNGDAGRPG 442
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 22/127 (17%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
GE G A +G P GP+ + G + + VG A PS GP G+RG
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGA---VGTAGPS---GPSGLPGERGAA 648
Query: 68 SVPASLGVPPPPAI----------------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+P G P + G + + G GA G P GP
Sbjct: 649 GIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPR 708
Query: 112 SRERKRG 118
+RG
Sbjct: 709 GSPGERG 715
Score = 32.7 bits (73), Expect = 0.065
Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 1 MGVLRARGEVGL------ALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCD 54
+G+ +RGE GL P +G A PP GP G +P G +
Sbjct: 873 LGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGN 932
Query: 55 DGP---------KSQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLP 104
DGP K +RG G + + G P P +G G RG S P G
Sbjct: 933 DGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGA 992
Query: 105 PCDGGPESRERKRG 118
GP + RG
Sbjct: 993 VGPRGPSGPQGIRG 1006
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP G + ++G P G+ PS GP + GK G + G+P P
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPS---GPAGEVGKPGERGLHGEFGLPGPA 585
Query: 80 A-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G G GA + P G P GP+ + + G
Sbjct: 586 GPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPG 625
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/127 (25%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV +GE G P G P G + +RG L G A P + GP +
Sbjct: 538 GVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGES 597
Query: 62 GKRGWLSVPASLGVPPPP----------AIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
G G S G PP +G + + G G RG P G +
Sbjct: 598 GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEK 657
Query: 112 SRERKRG 118
RG
Sbjct: 658 GEPGLRG 664
Score = 30.4 bits (67), Expect = 0.32
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ RG+ G VG PP G + + G A P GP+
Sbjct: 817 GLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGE---------AGTAGPPGTPGPQGLL 867
Query: 62 GKRGWLSVPASLGVPPPPAI-GVLRSRGGRG----AGSQSPPRGGCLPPCDGGP 110
G G L +P S G P + G + G G G++ PP P +G P
Sbjct: 868 GAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAP 921
Score = 30.0 bits (66), Expect = 0.42
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 8 GEVGLALSPRLVG-GASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
GE G A P G SP G P + GR G + P G + P+ GP G+ G
Sbjct: 385 GEAGSAGPPGPPGLRGSPGSRGLPGADGRA-GVMGPPGSRGASGPAGVRGPNGDAGRPGE 443
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
+ G+P P G G + P G LP DG P
Sbjct: 444 PGLMGPRGLPGSP--------GNIGPAGKEGPVG--LPGIDGRP 477
Score = 30.0 bits (66), Expect = 0.42
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV G+ G P L+G P G K G + P + G P GP R
Sbjct: 430 GVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI---GPAGAR 486
Query: 62 GKRGWLSVPASLGVPPPPA-------IGVLRSRGGRGA----GSQSPP 98
G+ G + P G P G+ +RG G G+Q PP
Sbjct: 487 GEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPP 534
Score = 29.6 bits (65), Expect = 0.55
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G +GE G+ VG A P GP RG P + G + GP
Sbjct: 742 GAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPS 801
Query: 62 GKRGWLSVPASLGVPPPPA--IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G +S P PP PA G+ RG +G ++ G PP G + + G
Sbjct: 802 G----ISGPPG---PPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAG 853
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ G+ G +P VG A P GP K G P VG A G + +
Sbjct: 1033 GIAGHHGDQG---APGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPA------GIRGPQ 1083
Query: 62 GKRGWLSVPASLGVPPPPAI 81
G +G P G P PP +
Sbjct: 1084 GHQGPAGPPGPPGPPGPPGV 1103
Score = 28.9 bits (63), Expect = 0.94
Identities = 27/103 (26%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G+ P G P G +RG + +P G GP G G
Sbjct: 193 GAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSA 252
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
P G P P G + + G G + PRG P GP
Sbjct: 253 GPPGFPGAPGPK--GEIGAVGNAGPAGPAGPRGEVGLPGLSGP 293
Score = 26.6 bits (57), Expect = 4.6
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 10 VGLALSPR-LVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLS 68
VGL P L+G PP G +G P G P+ GP GK G
Sbjct: 86 VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDG 145
Query: 69 VPASLGVPPPPAIGVLRSRGGRG 91
P G P GV+ +G RG
Sbjct: 146 HPGKPG--RPGERGVVGPQGARG 166
Score = 26.2 bits (56), Expect = 6.1
Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G + G VG +G A PP G P + G K G + GP
Sbjct: 232 GARGSDGSVGPVGPAGPIGSAGPP--GFPGAPGPK----------GEIGAVGNAGPAGPA 279
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGC-LPPCDGGP 110
G RG + +P G PP G GA + +G LP G P
Sbjct: 280 GPRGEVGLPGLSGPVGPP--------GNPGANGLTGAKGAAGLPGVAGAP 321
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 56 GPKSQRGKRGWLSVPASLGVPPPPAIG--VLRSRGGRGAGSQSPPRG 100
GP + G+ G P G P PP +G G+G G P G
Sbjct: 48 GPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMG 94
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 37.4 bits (85), Expect = 0.003
Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV +GE G+ L P L G P G P + G K G + P + G G + R
Sbjct: 726 GVQGQKGEPGVGL-PGLKG--LPGLPGIPGTPGEK-GSIGVPGVPGEHGAIGPPGLQGIR 781
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G+ G +P S+G P P IG +RG P GG PP GP + ++G
Sbjct: 782 GEPGPPGLPGSVGSPGVPGIGPPGARG---------PPGGQGPPGLSGPPGIKGEKG 829
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV +GE GL ++G GP+ ++G P L G G
Sbjct: 43 GVKGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYP 102
Query: 62 GKRGWLSVPASLGVPPPPAI-GVLRSRGGRG----------AGSQSPPRGGCLPPCDGGP 110
G G +P G P PP I G ++G RG AG+ PP LP G P
Sbjct: 103 GNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPG---LPGMKGDP 159
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
+G +RG+ G P G A P GP+ P + G GPK
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKG---------DPGISGTPGAPGLPGPKGS 1012
Query: 61 RGKRGWLSVPASLGVP----PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
G G P GVP P + G+ +G +G Q+ P G +P G
Sbjct: 1013 VGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRG 1064
Score = 32.3 bits (72), Expect = 0.085
Identities = 36/109 (33%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 7 RGEVGLALSPRLVGGA-SPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
+G+ G P + G A SP DG P G K SP VG+ K +RG G
Sbjct: 543 KGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKG----SPGSVGL---------KGERGPPG 589
Query: 66 WLSVPASLGV---PPPPAIGVLRSRGGRG-AGSQSPPRGGCLPPCDGGP 110
+ P S G P PP G G +G AG P LP G P
Sbjct: 590 GVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP 638
Score = 32.3 bits (72), Expect = 0.085
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
G+ +G+ G P G PP GP + P L G P G +
Sbjct: 1323 GLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGE-----PGLPGPEGPPGLKGLQGLP 1377
Query: 62 GKRGWLSVPASLGVPPPPAI----GVLRSRGGRGAGSQSPPRGGCLPP-CDGGPES 112
G +G V +G+P PP I G +G G + PRG PP DG P S
Sbjct: 1378 GPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGPDGLPGS 1433
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPS-CDDGPKSQRGKR 64
++GEVG P L G P G + G P L G SP +GPK RG +
Sbjct: 1187 SKGEVGF---PGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPG--SPGHATEGPKGDRGPQ 1241
Query: 65 GWLSVPASLGVPPPPAI-GVLRSRGGRG 91
G +P G PP + G+ +G +G
Sbjct: 1242 GQPGLPGLPGPMGPPGLPGIDGVKGDKG 1269
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRK--RGCLLSPCLVGVASPSCD----- 54
G+ ++GE G P G P G + G K RG P L G+ P
Sbjct: 1201 GIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPG 1260
Query: 55 -DGPKSQRGKRGWLSVPASLGVPPP 78
DG K +G GW P + GVP P
Sbjct: 1261 IDGVKGDKGNPGW---PGAPGVPGP 1282
Score = 27.7 bits (60), Expect = 2.1
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 2 GVLRARGEVGLALSPRLVGGAS----PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGP 57
G+ + G VG SP L G P DG P +G L G P+ GP
Sbjct: 1097 GLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAG-------LPGTPGPT---GP 1146
Query: 58 KSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
Q+G+ G +P S G P + G GA +G
Sbjct: 1147 AGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKG 1189
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 24 PPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
P G P G K G + P + G P G + +G +G VP + G+P PP
Sbjct: 1292 PGIGGSPGITGSK-GDMGPPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPP 1346
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 18 LVGGASPP----CDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASL 73
LVG PP DG P +G +G A P+ GP+ G G +P S+
Sbjct: 1388 LVGIPGPPGIPGFDGAPGQKGE----------MGPAGPT---GPRGFPGPPGPDGLPGSM 1434
Query: 74 GVPPPPAI--GVLRSRGGRGAGSQSPPRG 100
G P P++ G L +R + P G
Sbjct: 1435 GPPGTPSVDHGFLVTRHSQTIDDPQCPSG 1463
Score = 26.9 bits (58), Expect = 3.6
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 24/127 (18%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVA---SPSCDDGPKSQ---- 60
G GL P G PP G +RG L P L G A P G K
Sbjct: 103 GNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEI 162
Query: 61 ---------RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPE 111
+G+RG+ +P G P PP + L+ G G PP PP GP
Sbjct: 163 LGHVPGMLLKGERGFPGIP---GTPGPPGLPGLQGPVG-PPGFTGPPG----PPGPPGPP 214
Query: 112 SRERKRG 118
+ + G
Sbjct: 215 GEKGQMG 221
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
GG PP GP ++G P G+ P GPK +G +G + G+P P
Sbjct: 811 GGQGPPGLSGPPGIKGEKGF---PGFPGLDMP----GPKGDKGAQGLPGITGQSGLPGLP 863
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/85 (23%), Positives = 29/85 (34%)
Query: 16 PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGV 75
P L+G P + G G ++ +G G RG+ G P G
Sbjct: 310 PGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQ 369
Query: 76 PPPPAIGVLRSRGGRGAGSQSPPRG 100
P PP + V G G + +G
Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKG 394
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
+GE G P +V G P + G +RG +P GP+ + G +G+
Sbjct: 322 KGEAGPPGPPGIVIGTGPLGEKG------ERGYPGTP------------GPRGEPGPKGF 363
Query: 67 LSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
+P G P P G + G G + RG
Sbjct: 364 PGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRG 397
Score = 25.8 bits (55), Expect = 7.9
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 29 GPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP----AIGVL 84
GP RG +P + G + G +G G P + G+P P +G+
Sbjct: 960 GPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLP 1019
Query: 85 RSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+ G +G P+G P D G + + + G
Sbjct: 1020 GTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAG 1053
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G+ +P L+G PP G RG P G + GP+ +RG+ G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEP---GKNGAKGEPGPRGERGEAGIP 455
Query: 68 SVPASLGVP-------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
VP + G P A G+ + G RGA P G P + GP
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP 505
Score = 36.6 bits (83), Expect = 0.004
Identities = 37/104 (35%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RG GLA +P L GGA PP GPE +G P G A G +RG G
Sbjct: 683 RGPPGLAGAPGLRGGAGPP---GPEG---GKGAAGPPGPPGAAGTPGLQGMPGERGGLGS 736
Query: 67 LSVPASLGVP-PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
G P P A GV G RG P G P D G
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKG 780
Score = 35.8 bits (81), Expect = 0.008
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 2 GVLRARGEVGLALS---PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPK 58
G++ ARG G A + P L GGA P G + RG + GV +DG
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD 467
Query: 59 SQRGKRGWLSVPASLGVPPPPAI----------GVLRSRGGRGAGSQSPPRGGCLPP--- 105
G+ G +P + G P G G RGA + PRG P
Sbjct: 468 GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRD 527
Query: 106 -CDGGPESR 113
GGP R
Sbjct: 528 GVPGGPGMR 536
Score = 35.4 bits (80), Expect = 0.010
Identities = 36/121 (29%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPC-DGGPESRGRKRGCLLSPCLVGVASPSCDDGP--K 58
G+ RG G P L G A P DG P S G P D P K
Sbjct: 987 GLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGL---------------PGRDGSPGGK 1031
Query: 59 SQRGKRGWLSVPASLGVPPPPA-IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKR 117
RG+ G P + G P PP +G G RG + P G P G + R
Sbjct: 1032 GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091
Query: 118 G 118
G
Sbjct: 1092 G 1092
Score = 35.0 bits (79), Expect = 0.013
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
A+GEVG A SP G + GP+ +G P + G SP G K + G G
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGING--SP----GGKGEMGPAG 402
Query: 66 WLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P +G PP G GA RGG P G + RG
Sbjct: 403 IPGAPGLMGARGPP--------GPAGANGAPGLRGGAGEPGKNGAKGEPGPRG 447
Score = 33.9 bits (76), Expect = 0.029
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G PP GP + +G +P L G+A GP+ G+RG P G P P
Sbjct: 765 GPIGPP---GPAGQPGDKGEGGAPGLPGIA------GPRGSPGERGETGPPGPAGFPGAP 815
Query: 80 A----IGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
G RG G + P G PP GP
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP 850
Score = 32.7 bits (73), Expect = 0.065
Identities = 34/122 (27%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCL--LSPCLV-------GVASPSCDDGP 57
RGE G +P G PP GP + RG P G P G
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGD 1093
Query: 58 KSQRGKRGWLSVPASLGVP-PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERK 116
K + G+RG + G P P A G G +GA P G P GP ++
Sbjct: 1094 KGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGT 1153
Query: 117 RG 118
G
Sbjct: 1154 SG 1155
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL L G P GP +RG P L G A +DG + G+ G
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPGERG---RPGLPGAAGARGNDGARGSDGQPGPP 335
Query: 68 SVPASLGVPPPPA----IGVLRSRGGRGAGSQ 95
P + G P P +G S G GA Q
Sbjct: 336 GPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPP 79
G P GP G +G P G+ GP + GK G G P P
Sbjct: 612 GETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP 671
Query: 80 A----IGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
G RG G RGG PP GPE + G
Sbjct: 672 GGKGDAGAPGERGPPGLAGAPGLRGGAGPP---GPEGGKGAAG 711
Score = 31.2 bits (69), Expect = 0.19
Identities = 35/129 (27%), Positives = 42/129 (32%), Gaps = 24/129 (18%)
Query: 2 GVLRARGEVGLALSPRLVGGASPP-----CDGGPE-------SRGRKRGCLLSPCLVGVA 49
G+ G+ G+ P G PP C GP+ S K G + L G
Sbjct: 115 GIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGG-LAGYP 173
Query: 50 SPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
P+ GP G G P S G PP G Q+ P G PP G
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPP-----------GEPGQAGPSGPPGPPGAIG 222
Query: 110 PESRERKRG 118
P K G
Sbjct: 223 PSGPAGKDG 231
Score = 30.8 bits (68), Expect = 0.25
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G+A P GG+ P GP+ +RG P G GP G G
Sbjct: 837 GPPGVAGPP---GGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPP 893
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
S G PP G + G G+ S P+G P + G
Sbjct: 894 GPSGSPGKDGPP--GPAGNTGAPGSPGVSGPKGDAGQPGEKG 933
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 20/111 (18%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G+ P + G P GGP S G+ P G S GP G RG
Sbjct: 525 GRDGVPGGPGMRGMPGSP--GGPGSDGK-------PGPPGSQGESGRPGPPGPSGPRGQ- 574
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
P +G P P +G GA ++ RGG P GP + + G
Sbjct: 575 --PGVMGFPGP--------KGNDGAPGKNGERGGPGGPGPQGPPGKNGETG 615
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G+ G SP G A P GP K G P +G GP+ RG+RG
Sbjct: 1125 GQQGAIGSP---GPAGPRGPVGPSGPPGKDGTSGHPGPIG------PPGPRGNRGERGSE 1175
Query: 68 SVPASLGVPPPP 79
P G P PP
Sbjct: 1176 GSPGHPGQPGPP 1187
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G SP G PP + G G P +G + P+ DG + G+
Sbjct: 186 GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPG---PPGAIGPSGPAGKDGESGRPGR---- 238
Query: 68 SVPASLGVPPPPAI-------GVLRSRGGRGAGSQSPPRG 100
P G+P PP I G +G RG ++ +G
Sbjct: 239 --PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Score = 26.9 bits (58), Expect = 3.6
Identities = 31/105 (29%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 6 ARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRG 65
A G +G+A G A PP G P RG SP G K + GK G
Sbjct: 943 APGPLGIAGITGARGLAGPP--GMPGPRG---------------SPG-PQGVKGESGKPG 984
Query: 66 WLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
+ G P P + L G +P G LP DG P
Sbjct: 985 ANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSP 1028
Score = 26.2 bits (56), Expect = 6.1
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G G P ++G P + G + +RG P G + + GP+ G G
Sbjct: 567 GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGG 109
G P P + L GG + P G P D G
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPG--PKGDAG 666
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.003
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 2 GVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQR 61
GV +G G P +G + P GP RG P G P G
Sbjct: 583 GVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPV---GSPGLP 639
Query: 62 GKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRG 100
GK G L P G+P PP G+ +G RG + P+G
Sbjct: 640 GKLGSLGSPGLPGLPGPP--GLPGMKGDRGVVGEPGPKG 676
Score = 32.7 bits (73), Expect = 0.065
Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 22/130 (16%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL +P G PP + GP+ RG + + G+ P D G G+ G
Sbjct: 493 GPQGLPGAPGDQGQRGPPGEAGPKG---DRGAEGARGIPGLPGPKGDTGLPGVDGRDGIP 549
Query: 68 SVPASLGVPPPP-------------------AIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
+P + G P P A GV +G GA + G P
Sbjct: 550 GMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQ 609
Query: 109 GPESRERKRG 118
GP RG
Sbjct: 610 GPPGEVGPRG 619
Score = 32.3 bits (72), Expect = 0.085
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G++G SP L G PP G P +G RG +VG P + G + G+ G
Sbjct: 640 GKLGSLGSPGLPGLPGPP--GLPGMKG-DRG------VVGEPGPKGEQGASGEEGEAGER 690
Query: 68 SVPASLGVPPPPAI-------GVLRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRG 118
+G+P P G+ G RG PRG PP GP + ++G
Sbjct: 691 GELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRG---PP---GPRGVQGEQG 742
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 20 GGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWLSVPASLGVP--- 76
G PP G + G +P G+ P G +G++G VP S G P
Sbjct: 299 GPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRG 358
Query: 77 ------PPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGP 110
PP G+ G G RG PP GP
Sbjct: 359 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGP 398
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 7 RGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGW 66
RGE+G P G A P + G RG L GV P GP+ +G++G
Sbjct: 690 RGELGDIGLPGPKGSAGNPGEPGLRGPEGSRG------LPGVEGPRGPPGPRGVQGEQGA 743
Query: 67 LSVPASLGVP 76
+P G P
Sbjct: 744 TGLPGVQGPP 753
Score = 28.9 bits (63), Expect = 0.94
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 45 LVGVASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRG----AGSQSPPRG 100
L G P GP + G G + + G+ PP G L RG +G G + PP
Sbjct: 791 LPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPP--GALGLRGPKGDLGEKGERGPPGR 848
Query: 101 G--CLP-----PCDGGPESRER 115
G LP P D GP S R
Sbjct: 849 GPNGLPGAIGLPGDPGPASYGR 870
Score = 26.6 bits (57), Expect = 4.6
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 8 GEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQRGKRGWL 67
G GL +VG G + +G +P G P + GPK RG G
Sbjct: 466 GAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGAR 525
Query: 68 SVPASLGVPPPPAIGVLRSRGGRGA-----GSQSPPRGGCLPPCDGG 109
+P G+P P L GR G++ P G PP D G
Sbjct: 526 GIP---GLPGPKGDTGLPGVDGRDGIPGMPGTKGEP-GKPGPPGDAG 568
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.143 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,533,313
Number of Sequences: 37866
Number of extensions: 496718
Number of successful extensions: 3418
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 1402
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.