Search of human proteins with 169166962

Search of human proteins with 169166962

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169166962 PREDICTED: similar to COMM domain containing 5
[Homo sapiens]
         (273 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom...   556   e-159
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom...   556   e-159
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom...   556   e-159
gi|124487382 COMM domain containing 5 [Homo sapiens]                  378   e-105
gi|154800418 COMM domain containing 5 [Homo sapiens]                  378   e-105
gi|19923430 COMM domain containing 5 [Homo sapiens]                   378   e-105
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]         35   0.070
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]         34   0.12 
gi|89276766 trophinin isoform 5 [Homo sapiens]                         31   1.3  
gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo ...    30   3.0  
gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo ...    30   3.0  
gi|148276998 zinc finger protein 628 [Homo sapiens]                    30   3.0  
gi|29501809 coiled-coil domain containing 116 [Homo sapiens]           30   3.0  
gi|56699475 zinc finger protein 202 [Homo sapiens]                     29   3.9  
gi|11321571 slit homolog 3 [Homo sapiens]                              29   3.9  
gi|150036262 chloride channel accessory 4 [Homo sapiens]               29   5.0  
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]        29   5.0  
gi|21361661 COMM domain containing 4 [Homo sapiens]                    29   5.0  
gi|40807463 zinc finger protein 339 [Homo sapiens]                     29   5.0  
gi|188536004 zinc finger protein 469 [Homo sapiens]                    28   6.6  
gi|150378447 zinc and ring finger 3 [Homo sapiens]                     28   6.6  
gi|156119615 myosin IXA [Homo sapiens]                                 28   8.6  
gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]         28   8.6  
gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]          28   8.6  
gi|224451131 eyes shut homolog isoform 2 [Homo sapiens]                28   8.6  
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]                28   8.6  
gi|38093661 eyes shut homolog isoform 3 [Homo sapiens]                 28   8.6  

>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  556 bits (1434), Expect = e-159
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60
           MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL
Sbjct: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60

Query: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120
           HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL
Sbjct: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120

Query: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180
           GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF
Sbjct: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180

Query: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240
           GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE
Sbjct: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240

Query: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD
Sbjct: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  556 bits (1434), Expect = e-159
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60
           MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL
Sbjct: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60

Query: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120
           HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL
Sbjct: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120

Query: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180
           GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF
Sbjct: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180

Query: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240
           GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE
Sbjct: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240

Query: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD
Sbjct: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  556 bits (1434), Expect = e-159
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60
           MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL
Sbjct: 1   MAFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVL 60

Query: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120
           HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL
Sbjct: 61  HHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCL 120

Query: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180
           GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF
Sbjct: 121 GVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVGDLASVVF 180

Query: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240
           GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE
Sbjct: 181 GSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAYRFE 240

Query: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD
Sbjct: 241 VPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|124487382 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64

Query: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124

Query: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184

Query: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|154800418 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64

Query: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124

Query: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184

Query: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|19923430 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64

Query: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124

Query: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184

Query: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
          Length = 198

 Score = 35.0 bits (79), Expect = 0.070
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)

Query: 83  AAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCLGVSTNLPQEWLGALLAGMHTLL 142
           AA+  LL   ++ + R+L +   SS      ++ +     S ++ QE    LL  +H L 
Sbjct: 10  AALQSLLKASSKDVVRQLCQESFSS-SALGLKKLLDVTCSSLSVTQEEAEELLQALHRLT 68

Query: 143 QQALHLPPTS------LKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGA 196
           +       +S      L P  F   L+ L         L  ++         + AQ    
Sbjct: 69  RLVAFRDLSSAEAILALFPENFHQNLKNL---------LTKIIL-EHVSTWRTEAQANQI 118

Query: 197 WLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
            LP + D  W VD+  S+ +++R   P  L+Q+K+ +
Sbjct: 119 SLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 155


>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
          Length = 156

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 191 AQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
           AQ     LP + D  W VD+  S+ +++R   P  L+Q+K+ +
Sbjct: 71  AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113


>gi|89276766 trophinin isoform 5 [Homo sapiens]
          Length = 1431

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 4   SYLSSPSFSQTQKKPAFGCIGWGS-LAPGICIWDPPPGLANQGGS-SSSVCCGGHSSVLH 61
           S+ S+P+ S           G+G  L+  +C    P    + GG+ S+S+C GG      
Sbjct: 868 SFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTST 927

Query: 62  HPGGSHSGRVSFLGA 76
             GG+ S  VSF G+
Sbjct: 928 GFGGTLSTSVSFGGS 942



 Score = 28.5 bits (62), Expect = 6.6
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 26  GSLAPGICIWDPPPGLANQGGS-SSSVCCGGHSSVLHHPGGSHSGRVSFLGA 76
           G+L+  IC    P      GG+ S+SV  GG SS   + GG+ S  + F G+
Sbjct: 911 GTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSICFDGS 962


>gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo
          sapiens]
          Length = 118

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 15 QKKPAFGC--IGWGSLAPGICIWDP 37
          Q +P +GC  + WG L  G C+W P
Sbjct: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91


>gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo
          sapiens]
          Length = 118

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 15 QKKPAFGC--IGWGSLAPGICIWDP 37
          Q +P +GC  + WG L  G C+W P
Sbjct: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91


>gi|148276998 zinc finger protein 628 [Homo sapiens]
          Length = 1055

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 34  IWDPPPG-LANQGGSSSSVCCGGHSS-VLHHPGGSHSGRVSFLGAQLPP 80
           +W P PG L  QG +S+     G S  VL + GG  +G     G QL P
Sbjct: 770 VWLPGPGGLGVQGAASAGASGTGQSLIVLQNVGGGEAGPQEMSGVQLQP 818


>gi|29501809 coiled-coil domain containing 116 [Homo sapiens]
          Length = 613

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 19/129 (14%)

Query: 17  KPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVLHHPGGSHSGRVSFLGA 76
           +P+   +    + P +C   P     N   SSSS     HSS++    GSHS R S LGA
Sbjct: 127 RPSLSTVHRHRVRPTLCTGHP-----NNYPSSSSSMSNCHSSLMAGCLGSHS-RDSDLGA 180

Query: 77  Q--LPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAV--QCLGVSTNL------ 126
           Q  LPP     D+LL + N     +L +      Q    R+++    LG  T+       
Sbjct: 181 QGSLPP---VRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQ 237

Query: 127 PQEWLGALL 135
           P  W   LL
Sbjct: 238 PLSWFSGLL 246


>gi|56699475 zinc finger protein 202 [Homo sapiens]
          Length = 648

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 78  LPPEVAAMDQLLGDLNRSMFRKLLKFVVSSL-------QGEDCREAVQCLGVSTNLPQEW 130
           L PE    +Q+L  L    F  +L   + S         GE+    V+ L      P+ W
Sbjct: 75  LRPERRTKEQILELLVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRW 134

Query: 131 LGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQ 163
           +   + G   L ++ +HL      PN  +D +Q
Sbjct: 135 VTVHVHGQEVLSEETVHLGVEPESPNELQDPVQ 167


>gi|11321571 slit homolog 3 [Homo sapiens]
          Length = 1523

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 153 LKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVAD--FQWWVDV 210
           L+ NTF+D LQ L +       L ++  G   PL  S+     A  P V D   +W  D 
Sbjct: 394 LRVNTFQD-LQNLNLLSLYDNKLQTISKGLFAPL-QSIQTLHLAQNPFVCDCHLKWLADY 451

Query: 211 T----ISTSALARFLQPRVLMQLKLSDGLAYRFEVPIAKFQELRYSVALVLKEMADLEKR 266
                I TS  AR   PR L   ++S   + +F    ++    R+S    +  +   + R
Sbjct: 452 LQDNPIETSG-ARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCR 510

Query: 267 CEGSLQD 273
           CEG++ D
Sbjct: 511 CEGTIVD 517


>gi|150036262 chloride channel accessory 4 [Homo sapiens]
          Length = 919

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 14  TQKKPAFGCIGWGSLAPGICIWDP 37
           T  K  F  I W SL P I +WDP
Sbjct: 512 TVGKDTFFLITWNSLPPSISLWDP 535


>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
          Length = 1488

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 14/33 (42%), Positives = 14/33 (42%)

Query: 37   PPPGLANQGGSSSSVCCGGHSSVLHHPGGSHSG 69
            PPP       SSSS     H    HH G SH G
Sbjct: 1221 PPPPTGQASASSSSASSTHHHHHHHHHGHSHGG 1253


>gi|21361661 COMM domain containing 4 [Homo sapiens]
          Length = 199

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 152 SLKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVT 211
           S+   +   +LQ+L +P++    L       Q PL   + +     +  +A   W VD T
Sbjct: 83  SVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL-RVCSLRMNRLAGVGWRVDYT 141

Query: 212 ISTSALARFLQPRVLMQLKLS 232
           +S+S L    +P V ++L+++
Sbjct: 142 LSSSLLQSVEEPMVHLRLEVA 162


>gi|40807463 zinc finger protein 339 [Homo sapiens]
          Length = 275

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 31  GICIWDPPPGLANQGGSSSSVCCGGHSSVLHHPGGSHSGRVSFLGAQLPPE---VAAMDQ 87
           G  + DPP    + GGSSS    G  SS    PGG+ S           PE       D 
Sbjct: 37  GRLLHDPPEDCRSDGGSSS----GSGSSSAGEPGGAESSSSPHAPESETPEPGDAEGPDG 92

Query: 88  LLGDLNRSMFRKLLKFVVSS 107
            L    R + R  +KF   +
Sbjct: 93  HLATKQRPVARSKIKFTTGT 112


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 8    SPSFSQTQKKPAFGCIGWGSLAPGICIWDPPP------GLANQGGSSSSVCCGGHS---- 57
            S  F++  + P   C G    +PG+ I + PP      G     GS ++    G S    
Sbjct: 1210 STEFTEALRSPPAACAGEMGASPGLLIPEQPPPSRHDTGTPKPSGSLANTAPHGSSPTPG 1269

Query: 58   --SVLHHPGGSHS 68
              S+L  PGG+ +
Sbjct: 1270 VGSLLGGPGGTQA 1282


>gi|150378447 zinc and ring finger 3 [Homo sapiens]
          Length = 836

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 19/53 (35%), Positives = 22/53 (41%)

Query: 7   SSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSV 59
           S PS +      AF   G GSL     +   PP     G +SS  C  GH SV
Sbjct: 386 SPPSLAPRGPARAFPPSGSGSLLFPTVVHVAPPSHLESGSTSSFSCYHGHRSV 438


>gi|156119615 myosin IXA [Homo sapiens]
          Length = 2548

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 107 SLQGEDCREAVQCLGVSTNLPQEWLGAL---LAGMHTLLQQALHLPPTSLKPNTFRDQLQ 163
           +++GED R   + L     L  E +G L      + +LL   LHL     K  T+RD   
Sbjct: 389 TVEGEDLRHDFERL----QLAMEMVGFLPKTRRQIFSLLSAILHLGNICYKKKTYRDDSI 444

Query: 164 ELCIPQDL 171
           ++C P+ L
Sbjct: 445 DICNPEVL 452


>gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]
          Length = 651

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 2   AFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVLH 61
           A +Y S+ + S T   P +  +  GSL P   +W PP      G +      GG SS L 
Sbjct: 197 ATAYPSAKTPSSTYPAPFY--VADGSLHPSAELWSPP------GQAGFGPMLGGGSSPLP 248

Query: 62  HPGGS 66
            P GS
Sbjct: 249 LPPGS 253


>gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]
          Length = 654

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 2   AFSYLSSPSFSQTQKKPAFGCIGWGSLAPGICIWDPPPGLANQGGSSSSVCCGGHSSVLH 61
           A +Y S+ + S T   P +  +  GSL P   +W PP      G +      GG SS L 
Sbjct: 197 ATAYPSAKTPSSTYPAPFY--VADGSLHPSAELWSPP------GQAGFGPMLGGGSSPLP 248

Query: 62  HPGGS 66
            P GS
Sbjct: 249 LPPGS 253


>gi|224451131 eyes shut homolog isoform 2 [Homo sapiens]
          Length = 619

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)

Query: 70  RVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCLGVSTNLPQE 129
           ++   G Q  P++  +   LGD+        L+F   +L        V C+  +T   Q 
Sbjct: 65  KIDTSGNQAVPQICPLQIQLGDILVISSEPSLQFPEINLMNVSETSFVGCVQNTTTEDQL 124

Query: 130 WLGALLAGMHTL 141
             G  L GMHT+
Sbjct: 125 LFGCRLKGMHTV 136


>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
          Length = 3144

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)

Query: 70  RVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCLGVSTNLPQE 129
           ++   G Q  P++  +   LGD+        L+F   +L        V C+  +T   Q 
Sbjct: 65  KIDTSGNQAVPQICPLQIQLGDILVISSEPSLQFPEINLMNVSETSFVGCVQNTTTEDQL 124

Query: 130 WLGALLAGMHTL 141
             G  L GMHT+
Sbjct: 125 LFGCRLKGMHTV 136


>gi|38093661 eyes shut homolog isoform 3 [Homo sapiens]
          Length = 594

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)

Query: 70  RVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDCREAVQCLGVSTNLPQE 129
           ++   G Q  P++  +   LGD+        L+F   +L        V C+  +T   Q 
Sbjct: 65  KIDTSGNQAVPQICPLQIQLGDILVISSEPSLQFPEINLMNVSETSFVGCVQNTTTEDQL 124

Query: 130 WLGALLAGMHTL 141
             G  L GMHT+
Sbjct: 125 LFGCRLKGMHTV 136


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,539,589
Number of Sequences: 37866
Number of extensions: 553869
Number of successful extensions: 1338
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 31
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.