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Search of human proteins with 169163306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163306 PREDICTED: upstream binding transcription factor,
RNA polymerase I-like 5 [Homo sapiens]
(471 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163306 PREDICTED: upstream binding transcription factor, R... 966 0.0
gi|239741668 PREDICTED: upstream binding transcription factor, R... 861 0.0
gi|239747816 PREDICTED: upstream binding transcription factor, R... 797 0.0
gi|239753269 PREDICTED: upstream binding transcription factor, R... 793 0.0
gi|239741686 PREDICTED: upstream binding transcription factor, R... 793 0.0
gi|221136785 upstream binding transcription factor, RNA polymera... 725 0.0
gi|115529449 upstream binding transcription factor, RNA polymera... 294 1e-79
gi|115529451 upstream binding transcription factor, RNA polymera... 294 1e-79
gi|7657671 upstream binding transcription factor, RNA polymerase... 266 3e-71
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 72 1e-12
gi|83715964 high-mobility group 20B [Homo sapiens] 58 2e-08
gi|8922633 high-mobility group 20A [Homo sapiens] 55 2e-07
gi|4504425 high-mobility group box 1 [Homo sapiens] 53 7e-07
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 52 9e-07
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 52 9e-07
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 52 9e-07
gi|223468632 tripartite motif-containing 53 [Homo sapiens] 52 1e-06
gi|226246589 tripartite motif-containing 53-like [Homo sapiens] 52 1e-06
gi|239755490 PREDICTED: similar to tripartite motif-containing 5... 52 1e-06
gi|239750040 PREDICTED: similar to tripartite motif-containing 5... 52 1e-06
gi|239744451 PREDICTED: tripartite motif-containing 53-like [Hom... 52 1e-06
gi|239744351 PREDICTED: similar to tripartite motif-containing 5... 52 1e-06
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 52 2e-06
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 52 2e-06
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 52 2e-06
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 50 3e-06
gi|194688135 high-mobility group box 2 [Homo sapiens] 50 4e-06
gi|194688133 high-mobility group box 2 [Homo sapiens] 50 4e-06
gi|11321591 high-mobility group box 2 [Homo sapiens] 50 4e-06
gi|169202726 PREDICTED: similar to ring finger protein 18 isofor... 50 4e-06
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 966 bits (2497), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQHRAWRIHMVSTELESFREASYIESGPEEFYQR 60
MAHEREILKGMYEELKEKSHKPDVELIQHRAWRIHMVSTELESFREASYIESGPEEFYQR
Sbjct: 1 MAHEREILKGMYEELKEKSHKPDVELIQHRAWRIHMVSTELESFREASYIESGPEEFYQR 60
Query: 61 FKKCFSATHIFISMKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD 120
FKKCFSATHIFISMKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD
Sbjct: 61 FKKCFSATHIFISMKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD 120
Query: 121 WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR 180
WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR
Sbjct: 121 WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR 180
Query: 181 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 240
PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE
Sbjct: 181 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 240
Query: 241 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ 300
KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ
Sbjct: 241 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ 300
Query: 301 KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV 360
KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV
Sbjct: 301 KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV 360
Query: 361 ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG 420
ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG
Sbjct: 361 ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG 420
Query: 421 LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 421 LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 861 bits (2225), Expect = 0.0
Identities = 432/471 (91%), Positives = 440/471 (93%), Gaps = 14/471 (2%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQHRAWRIHMVSTELESFREASYIESGPEEFYQR 60
MAHEREILKGMYEELKEKSHKPDVELIQ A VS+E+ I+ + + R
Sbjct: 1 MAHEREILKGMYEELKEKSHKPDVELIQCVA-----VSSEMW------VIDQHSNDHWLR 49
Query: 61 FKKCFSATHIFISMKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD 120
+ + + I KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD
Sbjct: 50 VRSHHAVSRI---AKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMD 106
Query: 121 WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR 180
WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR
Sbjct: 107 WGKVAFKNFSGEMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR 166
Query: 181 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 240
PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE
Sbjct: 167 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 226
Query: 241 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ 300
KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ
Sbjct: 227 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQ 286
Query: 301 KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV 360
KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV
Sbjct: 287 KPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKV 346
Query: 361 ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG 420
ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG
Sbjct: 347 ELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQG 406
Query: 421 LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 407 LQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 457
>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 797 bits (2059), Expect = 0.0
Identities = 387/397 (97%), Positives = 392/397 (98%)
Query: 75 KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMC 134
KDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEMC
Sbjct: 4 KDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMC 63
Query: 135 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWP 194
RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENWP
Sbjct: 64 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWP 123
Query: 195 QYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQ 254
QYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLDQ
Sbjct: 124 QYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQ 183
Query: 255 KGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 314
KGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS
Sbjct: 184 KGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 243
Query: 315 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 374
WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY
Sbjct: 244 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 303
Query: 375 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 434
AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV
Sbjct: 304 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 363
Query: 435 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 364 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 793 bits (2048), Expect = 0.0
Identities = 385/397 (96%), Positives = 391/397 (98%)
Query: 75 KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMC 134
KDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEMC
Sbjct: 4 KDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMC 63
Query: 135 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWP 194
RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENWP
Sbjct: 64 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWP 123
Query: 195 QYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQ 254
QYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLDQ
Sbjct: 124 QYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQ 183
Query: 255 KGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 314
KGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGY KFHQDS
Sbjct: 184 KGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQDS 243
Query: 315 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 374
WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY
Sbjct: 244 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 303
Query: 375 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 434
AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV
Sbjct: 304 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 363
Query: 435 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
NCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 364 NCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 793 bits (2048), Expect = 0.0
Identities = 385/397 (96%), Positives = 391/397 (98%)
Query: 75 KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMC 134
KDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEMC
Sbjct: 4 KDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMC 63
Query: 135 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWP 194
RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENWP
Sbjct: 64 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWP 123
Query: 195 QYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQ 254
QYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLDQ
Sbjct: 124 QYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQ 183
Query: 255 KGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 314
KGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGY KFHQDS
Sbjct: 184 KGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFHQDS 243
Query: 315 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 374
WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY
Sbjct: 244 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 303
Query: 375 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 434
AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV
Sbjct: 304 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 363
Query: 435 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
NCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 364 NCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|221136785 upstream binding transcription factor, RNA polymerase
I-like 1 [Homo sapiens]
Length = 393
Score = 725 bits (1871), Expect = 0.0
Identities = 350/393 (89%), Positives = 368/393 (93%)
Query: 79 MALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 138
MALPRSQGHWSN DILRLLECMENN PSDDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 1 MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
Query: 139 LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQ 198
LEISC+LRKF TLK+LVLEAKKCVK NKSQK RN PDFPKRPLTAY RFFKE+WPQYSQ
Sbjct: 61 LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
Query: 199 MYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQKGKK 258
MYPGMRSQELTKILSKKY+ELPEQMKQKYIQDF+KEKQEFEEKL RFREEHPDL QK KK
Sbjct: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
Query: 259 SDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 318
S +SKR Q KVQKK QKNIEEV SLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
Query: 319 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 378
E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
Query: 379 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 438
ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
Query: 439 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 294 bits (752), Expect = 1e-79
Identities = 161/370 (43%), Positives = 226/370 (61%), Gaps = 42/370 (11%)
Query: 76 DIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 135
D++MA P+ Q WS D+L LLECM+NNLPS+D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 136 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQ 195
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+PLT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 196 YSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQK 255
Y++++P M + +LTKILSKKYKELPE+ K KYIQDFQ+EKQEFE L RFRE+HPDL Q
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 256 GKKSDISKRIQTK------------------------VQKKVQKNIEE----VTSLPKTD 287
KKSDI ++ +T +QK + NI E ++L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249
Query: 288 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 347
+ K KF G P KPP N Y + + ++ ++ + ERMV ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306
Query: 348 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 396
+ + +K+Y+VEL +L++L E+ K++T K A GG
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366
Query: 397 SLKQTDPQSS 406
S K P S+
Sbjct: 367 SEKPKRPVSA 376
Score = 181 bits (459), Expect = 1e-45
Identities = 122/364 (33%), Positives = 179/364 (49%), Gaps = 49/364 (13%)
Query: 152 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQEL 208
K L + K+ +K + G+ + PKRP++A F +E Q + P + EL
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400
Query: 209 TKILSKKYKELPEQMKQKY--------IQDFQKEKQEFEEK------------------- 241
T++L++ + +L E+ K KY Q +K E EE+
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460
Query: 242 ---LVRFREEHP-----------DLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTD 287
L RF+ + ++++K K I K + QK+ ++ + E+ + P
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518
Query: 288 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 347
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578
Query: 348 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 407
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638
Query: 408 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 464
++ E + + E + S E+ +DG+E E + +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 465 EDME 468
+D E
Sbjct: 699 DDDE 702
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 294 bits (752), Expect = 1e-79
Identities = 161/370 (43%), Positives = 226/370 (61%), Gaps = 42/370 (11%)
Query: 76 DIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 135
D++MA P+ Q WS D+L LLECM+NNLPS+D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 136 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQ 195
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+PLT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 196 YSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQK 255
Y++++P M + +LTKILSKKYKELPE+ K KYIQDFQ+EKQEFE L RFRE+HPDL Q
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 256 GKKSDISKRIQTK------------------------VQKKVQKNIEE----VTSLPKTD 287
KKSDI ++ +T +QK + NI E ++L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249
Query: 288 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 347
+ K KF G P KPP N Y + + ++ ++ + ERMV ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306
Query: 348 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 396
+ + +K+Y+VEL +L++L E+ K++T K A GG
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366
Query: 397 SLKQTDPQSS 406
S K P S+
Sbjct: 367 SEKPKRPVSA 376
Score = 181 bits (459), Expect = 1e-45
Identities = 122/364 (33%), Positives = 179/364 (49%), Gaps = 49/364 (13%)
Query: 152 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQEL 208
K L + K+ +K + G+ + PKRP++A F +E Q + P + EL
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400
Query: 209 TKILSKKYKELPEQMKQKY--------IQDFQKEKQEFEEK------------------- 241
T++L++ + +L E+ K KY Q +K E EE+
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460
Query: 242 ---LVRFREEHP-----------DLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTD 287
L RF+ + ++++K K I K + QK+ ++ + E+ + P
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518
Query: 288 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 347
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578
Query: 348 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 407
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638
Query: 408 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 464
++ E + + E + S E+ +DG+E E + +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 465 EDME 468
+D E
Sbjct: 699 DDDE 702
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 266 bits (680), Expect = 3e-71
Identities = 156/407 (38%), Positives = 222/407 (54%), Gaps = 79/407 (19%)
Query: 76 DIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 135
D++MA P+ Q WS D+L LLECM+NNLPS+D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 136 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQ 195
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+PLT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 196 YSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEH------ 249
Y++++P M + +LTKILSKKYKELPE+ K KYIQDFQ+EKQEFE L RFRE+H
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 250 -----------------------------PDLDQKGKKSDISKR---------------- 264
PD K K + K+
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKA 249
Query: 265 ----------IQTKVQKKVQKNIEEV----TSLPKTDQFFKKVKFHGEPQKPPMNGYHKF 310
++ +QK + NI E ++L K ++ K KF G P KPP N Y +
Sbjct: 250 LEQRKEYEEIMRDYIQKHPELNISEEGITKSTLTKAERQLKD-KFDGRPTKPPPNSYSLY 308
Query: 311 HQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLS 370
+ ++ ++ + ERMV ++W+ + Q +KD Y + + +K+Y+VEL +L++L
Sbjct: 309 CAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 366
Query: 371 PEDYAAY-----------KESTYAKGKNMAMMGGPAPSLKQTDPQSS 406
E+ K++T K A GG S K P S+
Sbjct: 367 EEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSA 413
Score = 181 bits (459), Expect = 1e-45
Identities = 122/364 (33%), Positives = 179/364 (49%), Gaps = 49/364 (13%)
Query: 152 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQEL 208
K L + K+ +K + G+ + PKRP++A F +E Q + P + EL
Sbjct: 378 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 437
Query: 209 TKILSKKYKELPEQMKQKY--------IQDFQKEKQEFEEK------------------- 241
T++L++ + +L E+ K KY Q +K E EE+
Sbjct: 438 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 497
Query: 242 ---LVRFREEHP-----------DLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTD 287
L RF+ + ++++K K I K + QK+ ++ + E+ + P
Sbjct: 498 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 555
Query: 288 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 347
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 556 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 615
Query: 348 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 407
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 616 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 675
Query: 408 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 464
++ E + + E + S E+ +DG+E E + +
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
Query: 465 EDME 468
+D E
Sbjct: 736 DDDE 739
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 71.6 bits (174), Expect = 1e-12
Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 178 PKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQE 237
PK+P+++Y+RF KE P + P ++ EL + ++++++ELP+ K+ Y ++ E Q
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 238 FEEKLVRFREE-HPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFH 296
++E++ RF+E+ P +K + K ++ K K K++
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
Query: 297 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 356
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
Query: 357 EYKVELDLW 365
Y E+ W
Sbjct: 210 RYHNEMKSW 218
Score = 38.1 bits (87), Expect = 0.017
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 301 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 358
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
Query: 359 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 409
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
Query: 410 GLQEGFGEGQGLQAAGTEASQTI---WVNCQVSMEPEENRKKDGEEEESSNSLDCSSGED 466
+ E F E +G + E +T+ W N +S +E + +E+E+ + S E+
Sbjct: 165 YVAERFQEAKG--DSPQEKLKTVKENWKN--LSDSEKELYIQHAKEDETRYHNEMKSWEE 220
Query: 467 MEVDV 471
++V
Sbjct: 221 QMIEV 225
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 57.8 bits (138), Expect = 2e-08
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 175 PDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKE 234
P+ PK P+T Y+RF E Q +P + E+TK+L ++ +L KQ+Y+ + ++E
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 235 KQEFEEKLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKT 286
KQ++ ++L +++ S+ K K+Q+K K + + L T
Sbjct: 127 KQQYMKELRAYQQ-----------SEAYKMCTEKIQEKKIKKEDSSSGLMNT 167
Score = 32.7 bits (73), Expect = 0.73
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 291 KKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 348
K+ K K P+ GY +F + +H L E +G W ++ ++K Y
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120
Query: 349 SQAELLQKEYKVEL 362
+AE +++Y EL
Sbjct: 121 DEAEREKQQYMKEL 134
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 54.7 bits (130), Expect = 2e-07
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 167 KSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQK 226
K +K + PK PLT Y+RF E Q P + E+T++L ++ +LP + KQ+
Sbjct: 92 KRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQR 151
Query: 227 YIQDFQKEKQEFEEKLVRFRE--------EHPDLDQKGK--KSDISKRIQTKVQKKVQKN 276
Y+ + ++K+ + ++L ++++ QKGK + D +++ +K+ +
Sbjct: 152 YLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVK 211
Query: 277 IEEVTSLP-KTDQFFKKVK 294
V +P T++F K
Sbjct: 212 ERSVFDIPIFTEEFLNHSK 230
Score = 35.0 bits (79), Expect = 0.15
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 301 KPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 358
K P+ GY +F + + + E +G W ++P +K Y +A+ ++ Y
Sbjct: 104 KSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY 163
Query: 359 KVELDLWLKTLSPEDYAAYKESTYAKGK 386
EL+ + KT E Y + T + K
Sbjct: 164 MKELEQYQKT---EAYKVFSRKTQDRQK 188
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 52.8 bits (125), Expect = 7e-07
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
Query: 116 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-----VLEAKKCVKNTNKSQ 169
+ H D V F FS + C +W +S + KF + K E K + +++
Sbjct: 29 KKHPD-ASVNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK 86
Query: 170 KGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQ 229
K P+ PKRP +A+ F E P+ +PG+ ++ K L + + KQ Y +
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEK 146
Query: 230 DFQKEKQEFEEKLVRFREE-HPDLDQKG-KKSDISKRIQTKVQKKVQKNIEE 279
K K+++E+ + +R + PD +KG K++ SK+ + + + + + EE
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE 198
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 52.4 bits (124), Expect = 9e-07
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 124 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRP 181
V F FS + C +W +S + KF + K + + +K K K + P PKRP
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 182 LTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEK 241
+ + F E P+ PG+ ++ K L + + L + KQ YI K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 242 LVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEE 279
+ D KG K D SKR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 52.4 bits (124), Expect = 9e-07
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 124 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRP 181
V F FS + C +W +S + KF + K + + +K K K + P PKRP
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 182 LTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEK 241
+ + F E P+ PG+ ++ K L + + L + KQ YI K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 242 LVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEE 279
+ D KG K D SKR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 52.4 bits (124), Expect = 9e-07
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 11/158 (6%)
Query: 124 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRP 181
V F FS + C +W +S + KF + K + + +K K K + P PKRP
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 182 LTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEK 241
+ + F E P+ PG+ ++ K L + + L + KQ YI K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 242 LVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEE 279
+ D KG K D SKR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|223468632 tripartite motif-containing 53 [Homo sapiens]
Length = 285
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|226246589 tripartite motif-containing 53-like [Homo sapiens]
Length = 285
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|239755490 PREDICTED: similar to tripartite motif-containing 53
[Homo sapiens]
Length = 283
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|239750040 PREDICTED: similar to tripartite motif-containing 53
[Homo sapiens]
Length = 283
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|239744451 PREDICTED: tripartite motif-containing 53-like [Homo
sapiens]
Length = 285
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|239744351 PREDICTED: similar to tripartite motif-containing 53
[Homo sapiens]
Length = 283
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEELKE HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELKEMCHKPDVELLQ 246
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 51.6 bits (122), Expect = 2e-06
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 124 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 180
+ F FS + C +W +S + KF+ L K + + +K+ ++ G+ P+ PKR
Sbjct: 36 INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
Query: 181 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 240
P + + F E P+ PG+ ++ K L + +K L + KQ YI K K+++E+
Sbjct: 95 PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
Query: 241 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEE 279
+ ++ KG KSD +K QKKV++ E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185
Score = 32.3 bits (72), Expect = 0.95
Identities = 36/176 (20%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 246 REEHPDLDQKG--KKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQ--FFKKVKFHGE--- 298
REEH + K ++ SK+ + + +K + L K D+ + +++K +G
Sbjct: 24 REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83
Query: 299 --------PQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 348
P++PP +G+ F + + + + + + ++G W+ + S+K Y
Sbjct: 84 GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 349 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 404
+QA L+++Y+ +D A YK +KGK+ G + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 51.6 bits (122), Expect = 2e-06
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 124 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 180
+ F FS + C +W +S + KF+ L K + + +K+ ++ G+ P+ PKR
Sbjct: 36 INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
Query: 181 PLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEE 240
P + + F E P+ PG+ ++ K L + +K L + KQ YI K K+++E+
Sbjct: 95 PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
Query: 241 KLVRFREEHPDLDQKGKKSDISKRIQTKVQKKVQKNIEE 279
+ ++ KG KSD +K QKKV++ E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185
Score = 32.3 bits (72), Expect = 0.95
Identities = 36/176 (20%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 246 REEHPDLDQKG--KKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQ--FFKKVKFHGE--- 298
REEH + K ++ SK+ + + +K + L K D+ + +++K +G
Sbjct: 24 REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83
Query: 299 --------PQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 348
P++PP +G+ F + + + + + + ++G W+ + S+K Y
Sbjct: 84 GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 349 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 404
+QA L+++Y+ +D A YK +KGK+ G + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 51.6 bits (122), Expect = 2e-06
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 175 PDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKE 234
P P +PL Y+R+ ++ W Q P ++ E+ KI+ +++L ++ KQ+Y+ +++ E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 235 KQEFEEKLVRFREEHPDLDQKGKKS-------DISKRIQTKVQK 271
K E+ E + + L KS + S++ Q++++K
Sbjct: 123 KIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEK 166
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 134 CRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKE 191
C +W +S + KF + K + + +K K K + P PKRP + + F E
Sbjct: 24 CSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSE 83
Query: 192 NWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPD 251
P+ PG+ ++ K L + + L + KQ YI K K+++E+ + D
Sbjct: 84 IRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVA-------D 136
Query: 252 LDQKGKKSDISKRIQTKVQKKVQKNIEE 279
KG K D SKR KKV++ E+
Sbjct: 137 SKSKG-KFDGSKRPAKVAWKKVEEEDED 163
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 116 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 169
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 170 KGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQ 229
+ P+ PKRP +A+ F E+ P+ +PG+ + K L + + E + KQ Y Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 230 DFQKEKQEFEEKLVRFREEHPDLDQKGKK 258
K K+++E+ + +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 116 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 169
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 170 KGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQ 229
+ P+ PKRP +A+ F E+ P+ +PG+ + K L + + E + KQ Y Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 230 DFQKEKQEFEEKLVRFREEHPDLDQKGKK 258
K K+++E+ + +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 116 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 169
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 170 KGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQ 229
+ P+ PKRP +A+ F E+ P+ +PG+ + K L + + E + KQ Y Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 230 DFQKEKQEFEEKLVRFREEHPDLDQKGKK 258
K K+++E+ + +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|169202726 PREDICTED: similar to ring finger protein 18 isoform 1
[Homo sapiens]
Length = 452
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 1 MAHEREILKGMYEELKEKSHKPDVELIQ 28
MAH REIL+GMYEEL E HKPDVEL+Q
Sbjct: 219 MAHRREILRGMYEELNEMCHKPDVELLQ 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,501,325
Number of Sequences: 37866
Number of extensions: 912936
Number of successful extensions: 4442
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 3817
Number of HSP's gapped (non-prelim): 784
length of query: 471
length of database: 18,247,518
effective HSP length: 106
effective length of query: 365
effective length of database: 14,233,722
effective search space: 5195308530
effective search space used: 5195308530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.