Guide to the Human Genome
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Name: NGEF Sequence: fasta or formatted (618aa) NCBI GI: 166197690
Description:

neuronal guanine nucleotide exchange factor isoform 2

Referenced in:

Neurons
Rho and Rac

Other entries for this name:
alt prot [710aa] neuronal guanine nucleotide exchange factor isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         37           3
 C cysteine            1.6         10           1
 D aspartate           5.3         33           2
 E glutamate          11.0         68          11
 F phenylalanine       3.6         22           1
 G glycine             2.9         18           1
 H histidine           2.4         15           1
 I isoleucine          5.7         35           2
 K lysine              5.0         31           2
 L leucine            11.7         72           2
 M methionine          2.4         15           1
 N asparagine          3.6         22           1
 P proline             5.0         31           2
 Q glutamine           5.7         35           2
 R arginine            7.3         45           2
 S serine              8.4         52           3
 T threonine           4.7         29           2
 V valine              4.4         27           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuronal guanine nucleotide exchange factor isoform... 
NGEF                  0.944   neuronal guanine nucleotide exchange factor isoform...
ARHGEF5               0.287   rho guanine nucleotide exchange factor 5 
ARHGEF19              0.286   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
ARHGEF16              0.248   Rho guanine exchange factor 16 
SGEF                  0.243   Src homology 3 domain-containing guanine nucleotide...
ARHGEF15              0.215   Rho guanine exchange factor 15 
ITSN1                 0.068   intersectin 1 isoform ITSN-l 
ITSN2                 0.065   intersectin 2 isoform 3 
ITSN2                 0.065   intersectin 2 isoform 1 
FGD1                  0.061   faciogenital dysplasia protein 
FGD4                  0.060   FYVE, RhoGEF and PH domain containing 4 
ARHGEF12              0.051   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
FGD3                  0.049   FYVE, RhoGEF and PH domain containing 3 
FGD3                  0.049   FYVE, RhoGEF and PH domain containing 3 
VAV2                  0.048   vav 2 guanine nucleotide exchange factor isoform 2 [...
PLEKHG5               0.047   pleckstrin homology domain containing family G membe...
PLEKHG5               0.047   pleckstrin homology domain containing family G memb...
PLEKHG5               0.047   pleckstrin homology domain containing family G memb...
PLEKHG5               0.047   pleckstrin homology domain containing family G memb...
PLEKHG5               0.047   pleckstrin homology domain containing family G memb...
FGD2                  0.047   FYVE, RhoGEF and PH domain containing 2 
ARHGEF11              0.046   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.046   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
ARHGEF1               0.046   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.046   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.046   Rho guanine nucleotide exchange factor 1 isoform 2 [...
VAV2                  0.046   vav 2 guanine nucleotide exchange factor isoform 1 ...
PREX1                 0.039   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
PREX2                 0.039   DEP domain containing 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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