Guide to the Human Genome
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Name: FGD3 Sequence: fasta or formatted (725aa) NCBI GI: 134133265
Description:

FYVE, RhoGEF and PH domain containing 3

Referenced in:

Rho and Rac
Zinc Finger Proteins

Other entries for this name:
alt mRNA [725aa] FYVE, RhoGEF and PH domain containing 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         50           3
 C cysteine            2.1         15           1
 D aspartate           5.2         38           1
 E glutamate           7.9         57           3
 F phenylalanine       2.5         18           1
 G glycine             7.3         53           2
 H histidine           2.9         21           2
 I isoleucine          4.4         32           2
 K lysine              6.2         45           2
 L leucine            10.1         73           3
 M methionine          1.8         13           1
 N asparagine          2.3         17           1
 P proline             7.7         56           2
 Q glutamine           5.9         43           3
 R arginine            4.7         34           2
 S serine              9.1         66           3
 T threonine           5.7         41           2
 V valine              5.0         36           2
 W tryptophan          1.2          9           1
 Y tyrosine            1.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FYVE, RhoGEF and PH domain containing 3 
FGD3                  1.000   FYVE, RhoGEF and PH domain containing 3 
FGD1                  0.420   faciogenital dysplasia protein 
FGD4                  0.334   FYVE, RhoGEF and PH domain containing 4 
FGD2                  0.308   FYVE, RhoGEF and PH domain containing 2 
FGD6                  0.128   FYVE, RhoGEF and PH domain containing 6 
FGD5                  0.101   FYVE, RhoGEF and PH domain containing 5 
FARP1                 0.070   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FARP2                 0.069   FERM, RhoGEF and pleckstrin domain protein 2 
PREX1                 0.060   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
ARHGEF17              0.053   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
ARHGEF4               0.051   Rho guanine nucleotide exchange factor 4 isoform a [...
ARHGEF4               0.051   Rho guanine nucleotide exchange factor 4 isoform b [...
PREX2                 0.051   DEP domain containing 2 isoform b 
PREX2                 0.051   DEP domain containing 2 isoform a 
KALRN                 0.046   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.046   kalirin, RhoGEF kinase isoform 3 
ECT2                  0.046   epithelial cell transforming sequence 2 oncogene pro...
ARHGEF10L             0.043   Rho guanine nucleotide exchange factor (GEF) 10-like...
ARHGEF10L             0.043   Rho guanine nucleotide exchange factor (GEF) 10-like...
TRIO                  0.042   triple functional domain (PTPRF interacting) 
GEFT                  0.042   RhoA/RAC/CDC42 exchange factor isoform 3 
VAV2                  0.042   vav 2 guanine nucleotide exchange factor isoform 2 [...
NGEF                  0.041   neuronal guanine nucleotide exchange factor isoform...
NGEF                  0.041   neuronal guanine nucleotide exchange factor isoform...
GEFT                  0.041   RhoA/RAC/CDC42 exchange factor isoform 1 
KALRN                 0.041   kalirin, RhoGEF kinase isoform 2 
SPATA13               0.040   spermatogenesis associated 13 
PLEKHG1               0.039   pleckstrin homology domain containing, family G (wit...
PLEKHG2               0.039   common-site lymphoma/leukemia guanine nucleotide ex...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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