Guide to the Human Genome
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Name: MRPS15 Sequence: fasta or formatted (257aa) NCBI GI: 16554611
Description:

mitochondrial ribosomal protein S15

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         22           5
 C cysteine            0.8          2           1
 D aspartate           4.7         12           3
 E glutamate           4.7         12           2
 F phenylalanine       2.7          7           1
 G glycine             3.5          9           3
 H histidine           1.6          4           1
 I isoleucine          4.7         12           2
 K lysine             12.1         31           2
 L leucine            11.3         29           3
 M methionine          2.3          6           1
 N asparagine          3.1          8           1
 P proline             5.8         15           3
 Q glutamine           5.4         14           1
 R arginine           10.1         26           3
 S serine              4.7         12           1
 T threonine           3.9         10           1
 V valine              5.8         15           2
 W tryptophan          1.2          3           1
 Y tyrosine            3.1          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S15 
ZFC3H1                0.027   proline/serine-rich coiled-coil 2 
IL16                  0.016   interleukin 16 isoform 2 
LUZP2                 0.016   leucine zipper protein 2 
IFT74                 0.014   coiled-coil domain containing 2 isoform b 
IFT74                 0.014   coiled-coil domain containing 2 isoform a 
IFT74                 0.014   coiled-coil domain containing 2 isoform a 
IFT74                 0.014   coiled-coil domain containing 2 isoform a 
C6orf170              0.014   hypothetical protein LOC221322 
SYNE2                 0.014   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.014   spectrin repeat containing, nuclear envelope 2 isof...
PNN                   0.014   pinin, desmosome associated protein 
STMN1                 0.014   stathmin 1 isoform a 
STMN1                 0.014   stathmin 1 isoform a 
STMN1                 0.014   stathmin 1 isoform a 
WDR67                 0.012   WD repeat domain 67 isoform 1 
WDR67                 0.012   WD repeat domain 67 isoform 2 
NEB                   0.012   nebulin 
SRGAP3                0.012   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
SRGAP3                0.012   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
ETFB                  0.012   electron-transfer-flavoprotein, beta polypeptide iso...
TTN                   0.010   titin isoform N2-A 
XYLT1                 0.010   xylosyltransferase I 
CNTLN                 0.010   centlein isoform 1 
CNTLN                 0.010   centlein isoform 2 
LOC283999             0.010   hypothetical protein LOC283999 
CTCFL                 0.010   CCCTC-binding factor-like protein 
MIA3                  0.010   melanoma inhibitory activity family, member 3 [Homo...
SPZ1                  0.010   spermatogenic leucine zipper 1 
CIT                   0.010   citron 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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