Guide to the Human Genome
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Name: SRGAP3 Sequence: fasta or formatted (1099aa) NCBI GI: 24307967
Description:

SLIT-ROBO Rho GTPase activating protein 3 isoform a

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [1075aa] SLIT-ROBO Rho GTPase activating protein 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         68           3
 C cysteine            1.5         17           2
 D aspartate           5.8         64           2
 E glutamate           8.5         93           2
 F phenylalanine       3.4         37           2
 G glycine             4.5         50           2
 H histidine           3.4         37           2
 I isoleucine          5.0         55           3
 K lysine              6.4         70           2
 L leucine             8.7         96           3
 M methionine          3.1         34           2
 N asparagine          3.5         39           2
 P proline             5.6         62           3
 Q glutamine           5.1         56           3
 R arginine            6.6         72           3
 S serine              9.7        107           7
 T threonine           4.6         51           2
 V valine              5.2         57           2
 W tryptophan          0.3          3           2
 Y tyrosine            2.8         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 
SRGAP3                0.959   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
SRGAP1                0.664   SLIT-ROBO Rho GTPase activating protein 1 
SRGAP2                0.555   SLIT-ROBO Rho GTPase activating protein 2 isoform a...
SRGAP2                0.497   SLIT-ROBO Rho GTPase activating protein 2 isoform b...
ARHGAP4               0.359   Rho GTPase activating protein 4 
ARHGAP22              0.042   Rho GTPase activating protein 2 
ARHGAP23              0.041   Rho GTPase activating protein 23 
ARHGAP24              0.041   Rho GTPase activating protein 24 isoform 3 
ARHGAP24              0.041   Rho GTPase activating protein 24 isoform 2 
ARHGAP24              0.041   Rho GTPase activating protein 24 isoform 1 
ARHGAP21              0.040   Rho GTPase activating protein 21 
CHN1                  0.039   chimerin (chimaerin) 1 isoform a 
CHN1                  0.039   chimerin (chimaerin) 1 isoform b 
CHN2                  0.038   beta chimerin isoform 2 
CHN2                  0.038   beta chimerin isoform 1 
ARHGAP1               0.035   Rho GTPase activating protein 1 
ARHGAP27              0.035   Rho GTPase activating protein 27 isoform b 
ARHGAP27              0.035   Rho GTPase activating protein 27 isoform a 
GRLF1                 0.035   glucocorticoid receptor DNA binding factor 1 
ARHGAP5               0.034   Rho GTPase activating protein 5 isoform a 
ARHGAP5               0.034   Rho GTPase activating protein 5 isoform b 
ARHGAP6               0.034   Rho GTPase activating protein 6 isoform 4 
ARHGAP6               0.034   Rho GTPase activating protein 6 isoform 1 
ARHGAP6               0.033   Rho GTPase activating protein 6 isoform 3 
LOC553158             0.033   PRR5-ARHGAP8 fusion protein 
ARHGAP8               0.033   Rho GTPase activating protein 8 isoform 2 
ARHGAP8               0.033   Rho GTPase activating protein 8 isoform 1 
BCR                   0.032   breakpoint cluster region isoform 2 
BCR                   0.032   breakpoint cluster region isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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