COL6A6 6005

Name: COL6A6	Sequence: fasta or formatted (2263aa)		NCBI GI: 156616290
Description: collagen type VI alpha 6		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 149 2 C cysteine 1.3 29 3 D aspartate 6.1 137 3 E glutamate 6.6 150 2 F phenylalanine 4.8 109 2 G glycine 10.2 230 2 H histidine 2.1 48 2 I isoleucine 5.9 133 2 K lysine 6.7 152 2 L leucine 8.0 180 2 M methionine 2.1 47 2 N asparagine 4.1 92 1 P proline 4.8 108 3 Q glutamine 4.2 95 2 R arginine 5.3 121 2 S serine 7.5 170 2 T threonine 4.6 103 2 V valine 6.9 157 3 W tryptophan 0.3 6 1 Y tyrosine 2.1 47 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen type VI alpha 6 COL29A1 0.502 collagen, type XXIX, alpha 1 COL6A3 0.249 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.249 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.243 alpha 3 type VI collagen isoform 4 precursor COL6A3 0.092 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.075 alpha 3 type VI collagen isoform 2 precursor COL6A2 0.058 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.058 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.058 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A1 0.058 collagen, type VI, alpha 1 precursor COL2A1 0.057 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.057 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL3A1 0.057 collagen type III alpha 1 preproprotein COL1A1 0.056 alpha 1 type I collagen preproprotein COL5A1 0.056 alpha 1 type V collagen preproprotein COL27A1 0.056 collagen, type XXVII, alpha 1 COL11A1 0.055 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.055 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.055 alpha 1 type XI collagen isoform A preproprotein [Ho... LOC100293055 0.054 PREDICTED: similar to COL22A1 protein COL22A1 0.054 collagen, type XXII, alpha 1 COL5A3 0.053 collagen, type V, alpha 3 preproprotein COL4A3 0.053 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.053 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.053 alpha 3 type IV collagen isoform 1 precursor COL16A1 0.053 alpha 1 type XVI collagen precursor COL4A3 0.053 alpha 3 type IV collagen isoform 5 precursor COL5A2 0.053 alpha 2 type V collagen preproprotein COL7A1 0.053 alpha 1 type VII collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.