Guide to the Human Genome
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Name: GLIS2 Sequence: fasta or formatted (524aa) NCBI GI: 110431364
Description:

GLIS family zinc finger 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         32           2
 C cysteine            2.7         14           2
 D aspartate           4.2         22           2
 E glutamate           4.2         22           1
 F phenylalanine       2.9         15           2
 G glycine            11.3         59           5
 H histidine           3.8         20           1
 I isoleucine          1.7          9           3
 K lysine              5.5         29           1
 L leucine            13.0         68           2
 M methionine          1.0          5           1
 N asparagine          3.2         17           1
 P proline            13.0         68           3
 Q glutamine           1.9         10           2
 R arginine            5.3         28           1
 S serine              9.4         49           3
 T threonine           3.1         16           1
 V valine              5.0         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLIS family zinc finger 2 
GLIS1                 0.171   GLIS family zinc finger 1 
GLIS3                 0.169   GLIS family zinc finger 3 isoform a 
GLIS3                 0.169   GLIS family zinc finger 3 isoform b 
GLI1                  0.160   GLI family zinc finger 1 isoform 2 
GLI1                  0.160   GLI family zinc finger 1 isoform 1 
GLI2                  0.157   GLI-Kruppel family member GLI2 
GLI3                  0.157   GLI-Kruppel family member GLI3 
ZIC2                  0.154   zinc finger protein of the cerebellum 2 
ZIC4                  0.150   zinc finger protein of the cerebellum 4 
ZIC1                  0.145   zinc finger protein of the cerebellum 1 
ZIC5                  0.143   zinc finger protein of the cerebellum 5 
ZIC3                  0.141   zinc finger protein of the cerebellum 3 
ZNF143                0.088   zinc finger protein 143 
ZNF76                 0.080   zinc finger protein 76 (expressed in testis) 
ZNF20                 0.076   zinc finger protein 20 
ZNF572                0.074   zinc finger protein 572 
ZNF410                0.074   zinc finger protein 410 
ZNF358                0.074   zinc finger protein 358 
ZNF672                0.074   zinc finger protein 672 
ZNF853                0.074   zinc finger protein 853 
ZNF497                0.073   zinc finger protein 497 
ZNF771                0.073   zinc finger protein 771 
ZNF771                0.073   zinc finger protein 771 
ZNF300                0.072   zinc finger protein 300 
ZNF177                0.072   zinc finger protein 177 
ZNF700                0.072   zinc finger protein 700 
ZNF268                0.072   zinc finger protein 268 
ZNF81                 0.072   zinc finger protein 81 
ZSCAN29               0.072   zinc finger protein 690 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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