Guide to the Human Genome
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Name: GLI2 Sequence: fasta or formatted (1586aa) NCBI GI: 86991432
Description:

GLI-Kruppel family member GLI2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3        148           7
 C cysteine            1.7         27           1
 D aspartate           4.0         64           2
 E glutamate           4.5         71           2
 F phenylalanine       1.8         28           1
 G glycine             8.8        140           4
 H histidine           4.3         68           2
 I isoleucine          2.1         33           1
 K lysine              3.0         48           2
 L leucine             8.5        135           2
 M methionine          2.5         40           2
 N asparagine          3.2         50           2
 P proline            11.0        174           3
 Q glutamine           5.9         94           3
 R arginine            5.0         80           2
 S serine             11.9        188           4
 T threonine           5.1         81           3
 V valine              4.7         75           2
 W tryptophan          0.3          4           1
 Y tyrosine            2.4         38           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLI-Kruppel family member GLI2 
GLI3                  0.359   GLI-Kruppel family member GLI3 
GLI1                  0.166   GLI family zinc finger 1 isoform 1 
GLI1                  0.144   GLI family zinc finger 1 isoform 2 
GLIS3                 0.078   GLIS family zinc finger 3 isoform a 
GLIS3                 0.078   GLIS family zinc finger 3 isoform b 
GLIS1                 0.064   GLIS family zinc finger 1 
GLIS2                 0.053   GLIS family zinc finger 2 
ZIC5                  0.049   zinc finger protein of the cerebellum 5 
ZIC4                  0.049   zinc finger protein of the cerebellum 4 
ZIC2                  0.049   zinc finger protein of the cerebellum 2 
ZIC3                  0.047   zinc finger protein of the cerebellum 3 
ZIC1                  0.047   zinc finger protein of the cerebellum 1 
ZNF143                0.032   zinc finger protein 143 
MTF1                  0.031   metal-regulatory transcription factor 1 
ZNF391                0.027   zinc finger protein 391 
ZNF76                 0.027   zinc finger protein 76 (expressed in testis) 
WT1                   0.026   Wilms tumor 1 isoform B 
ZNF7                  0.025   zinc finger protein 7 
ZNF568                0.025   zinc finger protein 568 
ZNF410                0.024   zinc finger protein 410 
WT1                   0.024   Wilms tumor 1 isoform A 
ZNF384                0.024   nuclear matrix transcription factor 4 isoform d [Ho...
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF182                0.024   zinc finger protein 21 isoform 2 
ZNF182                0.024   zinc finger protein 21 isoform 1 
ZNF84                 0.024   zinc finger protein 84 
ZNF84                 0.024   zinc finger protein 84 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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