Guide to the Human Genome
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Name: ZNF20 Sequence: fasta or formatted (532aa) NCBI GI: 116875829
Description:

zinc finger protein 20

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         19           1
 C cysteine            7.1         38           1
 D aspartate           3.0         16           2
 E glutamate           9.0         48           2
 F phenylalanine       4.9         26           1
 G glycine             7.0         37           1
 H histidine           7.1         38           2
 I isoleucine          3.6         19           1
 K lysine             10.3         55           2
 L leucine             3.8         20           2
 M methionine          1.3          7           2
 N asparagine          2.8         15           1
 P proline             3.6         19           1
 Q glutamine           4.1         22           1
 R arginine            6.4         34           2
 S serine              7.7         41           3
 T threonine           7.1         38           2
 V valine              2.8         15           1
 W tryptophan          0.4          2           1
 Y tyrosine            4.3         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 20 
ZNF433                0.618   zinc finger protein 433 
ZNF700                0.596   zinc finger protein 700 
ZNF709                0.589   zinc finger protein 709 isoform a 
LOC729747             0.555   similar to zinc finger protein 709 
ZNF564                0.550   zinc finger protein 564 
ZNF14                 0.550   zinc finger protein 14 
ZNF443                0.548   zinc finger protein 443 
ZNF709                0.542   zinc finger protein 709 isoform b 
ZNF791                0.539   zinc finger protein 791 
ZNF823                0.535   ZFP-36 for a zinc finger protein 
ZNF136                0.530   zinc finger protein 136 
ZNF799                0.522   zinc finger protein 799 
ZNF440                0.517   zinc finger protein 440 
LOC100292533          0.517   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.517   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.517   PREDICTED: hypothetical protein XP_002343682 
ZNF44                 0.516   zinc finger protein 44 
ZNF439                0.512   zinc finger protein 439 
ZNF442                0.508   zinc finger protein 442 
ZNF441                0.505   zinc finger protein 441 
ZNF627                0.494   zinc finger protein 627 
ZNF491                0.491   zinc finger protein 491 
ZNF490                0.484   zinc finger protein 490 
ZNF563                0.455   zinc finger protein 563 
ZNF699                0.444   zinc finger protein 699 
ZNF555                0.437   zinc finger protein 555 
ZNF420                0.431   zinc finger protein 420 
ZNF844                0.426   zinc finger protein 844 
ZNF77                 0.426   zinc finger protein 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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