Search of human proteins with 11034855

Search of human proteins with 11034855

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11034855 TMEM9 domain family, member B [Homo sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11034855 TMEM9 domain family, member B [Homo sapiens]              401   e-112
gi|7705999 transmembrane protein 9 [Homo sapiens]                     213   1e-55
gi|154426264 ubiquitin protein ligase E3 component n-recognin 7 ...    31   0.60 
gi|154426322 ubiquitin protein ligase E3 component n-recognin 7 ...    31   0.60 
gi|161019170 mucin 5AC [Homo sapiens]                                  30   1.8  
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]       30   1.8  
gi|30794504 zinc finger protein 354C [Homo sapiens]                    28   6.7  
gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo sap...    27   8.7  
gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo sap...    27   8.7  

>gi|11034855 TMEM9 domain family, member B [Homo sapiens]
          Length = 198

 Score =  401 bits (1031), Expect = e-112
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKN 60
           MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKN
Sbjct: 1   MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKN 60

Query: 61  ISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMV 120
           ISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMV
Sbjct: 61  ISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMV 120

Query: 121 YLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWK 180
           YLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWK
Sbjct: 121 YLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWK 180

Query: 181 LQVQEQRKSVFDRHVVLS 198
           LQVQEQRKSVFDRHVVLS
Sbjct: 181 LQVQEQRKSVFDRHVVLS 198


>gi|7705999 transmembrane protein 9 [Homo sapiens]
          Length = 183

 Score =  213 bits (541), Expect = 1e-55
 Identities = 106/182 (58%), Positives = 138/182 (75%), Gaps = 2/182 (1%)

Query: 17  LSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMP 76
           LS +A+   LL   ++A K+ ED+RCKCICPPY+  SGHIYN+N+SQKDC+CLHVVEPMP
Sbjct: 4   LSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMP 63

Query: 77  VRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGH 136
           V G DVEAYCL CEC+YEERS+ TIKV I+IYLS++G LLLYM +L LV+P++ R+   +
Sbjct: 64  VPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLI-RKPDAY 122

Query: 137 AQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVV 196
            + + ++++  D +  A A   L   R+   VL +VE AQQRWKLQVQEQRK+VFDRH +
Sbjct: 123 TEQLHNEEENEDARSMAAAAASLGGPRAN-TVLERVEGAQQRWKLQVQEQRKTVFDRHKM 181

Query: 197 LS 198
           LS
Sbjct: 182 LS 183


>gi|154426264 ubiquitin protein ligase E3 component n-recognin 7
          (putative) isoform 3 [Homo sapiens]
          Length = 349

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 37 FEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCE 90
          F+++ CK +    K NSG+ YN N     C C           PD    C+ CE
Sbjct: 30 FKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCE 83


>gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
           (putative) isoform 2 [Homo sapiens]
          Length = 425

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 37  FEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCE 90
           F+++ CK +    K NSG+ YN N     C C           PD    C+ CE
Sbjct: 106 FKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCE 159


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 44   CICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECK 92
            C+CPP   + G      I+++DC C+H  E     G  +   C  C C+
Sbjct: 1494 CVCPPGLVSDGS--GGCIAEEDCPCVH-NEATYKPGETIRVDCNTCTCR 1539


>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
          Length = 5765

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 44  CICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECK 92
           C+CPP   + G      I+++DC C+H  E     G  +   C  C C+
Sbjct: 838 CVCPPGLVSDGS--GGCIAEEDCPCVH-NEATYKPGETIRVDCNTCTCR 883


>gi|30794504 zinc finger protein 354C [Homo sapiens]
          Length = 554

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 32  DAAKNFEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCEC 91
           D  +NF+ ++C  I P  K +  +   K+  Q     LH++E   +   +    C  CE 
Sbjct: 196 DFKQNFDLMKCFQIYPGGKPHICNECGKSFKQN----LHLIEHQRIHTGEKPYKCNECEK 251

Query: 92  KYEERSSV 99
            +  RSS+
Sbjct: 252 TFSHRSSL 259


>gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo
           sapiens]
          Length = 839

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 50  KENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYL 109
           K+ +G    K +    C+C H  +                 C+   RS+  I     I  
Sbjct: 653 KDRAGQAATKLLRVNLCECTHPTQ-----------------CRATSRSTGVILGKWAILA 695

Query: 110 SILGLLLLYMVYLTLV 125
            +LG+ LL+ V LTLV
Sbjct: 696 ILLGIALLFSVLLTLV 711


>gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo
           sapiens]
          Length = 896

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 50  KENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYL 109
           K+ +G    K +    C+C H  +                 C+   RS+  I     I  
Sbjct: 653 KDRAGQAATKLLRVNLCECTHPTQ-----------------CRATSRSTGVILGKWAILA 695

Query: 110 SILGLLLLYMVYLTLV 125
            +LG+ LL+ V LTLV
Sbjct: 696 ILLGIALLFSVLLTLV 711


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,131,508
Number of Sequences: 37866
Number of extensions: 286536
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.