Guide to the Human Genome
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Name: UBR7 Sequence: fasta or formatted (349aa) NCBI GI: 154426264
Description:

ubiquitin protein ligase E3 component n-recognin 7 (putative) isoform 3

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [425aa] ubiquitin protein ligase E3 component n-recognin 7 (putative) iso...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         20           3
 C cysteine            4.9         17           1
 D aspartate           8.9         31           2
 E glutamate           8.3         29           2
 F phenylalanine       3.7         13           2
 G glycine             4.9         17           1
 H histidine           0.9          3           1
 I isoleucine          3.4         12           1
 K lysine              8.6         30           2
 L leucine             8.0         28           2
 M methionine          2.6          9           1
 N asparagine          4.6         16           1
 P proline             4.0         14           2
 Q glutamine           5.4         19           2
 R arginine            5.2         18           3
 S serine              6.3         22           3
 T threonine           4.3         15           1
 V valine              5.4         19           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3 component n-recognin 7 ... 
UBR7                  0.952   ubiquitin protein ligase E3 component n-recognin 7 ...
BPTF                  0.031   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.031   bromodomain PHD finger transcription factor isoform ...
PHF2                  0.031   PHD finger protein 2 
PHF8                  0.028   PHD finger protein 8 
JHDM1D                0.028   jumonji C domain containing histone demethylase 1 ho...
CXXC1                 0.017   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.017   CXXC finger 1 (PHD domain) isoform 2 
DIDO1                 0.014   death inducer-obliterator 1 isoform c 
DIDO1                 0.014   death inducer-obliterator 1 isoform b 
DIDO1                 0.014   death inducer-obliterator 1 isoform a 
DIDO1                 0.014   death inducer-obliterator 1 isoform a 
MTF2                  0.011   metal response element binding transcription factor 2...
PSMD12                0.011   proteasome 26S non-ATPase subunit 12 isoform 1 
PSMD12                0.011   proteasome 26S non-ATPase subunit 12 isoform 2 [Homo...
HSPA4L                0.010   heat shock 70kDa protein 4-like 
KDM5A                 0.010   retinoblastoma binding protein 2 isoform 1 
ITGB6                 0.010   integrin, beta 6 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
CHD2                  0.010   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.010   chromodomain helicase DNA binding protein 2 isoform...
AGPAT5                0.009   1-acylglycerol-3-phosphate O-acyltransferase 5 [Homo...
TMEM9B                0.009   TMEM9 domain family, member B 
KTN1                  0.009   kinectin 1 isoform a 
KTN1                  0.009   kinectin 1 isoform c 
KTN1                  0.009   kinectin 1 isoform a 
OXR1                  0.009   oxidation resistance 1 isoform 2 
OXR1                  0.009   oxidation resistance 1 isoform 1 
CCDC151               0.009   coiled-coil domain containing 151 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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