Guide to the Human Genome
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Name: CEACAM20 Sequence: fasta or formatted (503aa) NCBI GI: 156564390
Description:

carcinoembryonic antigen-related cell adhesion molecule 20 4L

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [596aa] carcinoembryonic antigen-related cell adhesion molecule 20 5L
alt prot [491aa] carcinoembryonic antigen-related cell adhesion molecule 20 4S
alt prot [584aa] carcinoembryonic antigen-related cell adhesion molecule 20 5S
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         28           3
 C cysteine            1.8          9           1
 D aspartate           3.4         17           1
 E glutamate           7.2         36           2
 F phenylalanine       2.0         10           1
 G glycine             4.8         24           1
 H histidine           2.8         14           2
 I isoleucine          5.6         28           2
 K lysine              3.0         15           1
 L leucine            10.3         52           2
 M methionine          2.0         10           1
 N asparagine          4.2         21           2
 P proline             8.5         43           3
 Q glutamine           4.2         21           1
 R arginine            5.0         25           2
 S serine             11.1         56           3
 T threonine           7.2         36           2
 V valine              7.4         37           2
 W tryptophan          1.8          9           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carcinoembryonic antigen-related cell adhesion mole... 
CEACAM20              0.965   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.676   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.676   carcinoembryonic antigen-related cell adhesion mole...
CEACAM1               0.174   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.168   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.132   carcinoembryonic antigen-related cell adhesion molec...
CEACAM6               0.081   carcinoembryonic antigen-related cell adhesion molec...
CEACAM16              0.079   carcinoembryonic antigen-related cell adhesion molec...
PSG9                  0.077   pregnancy specific beta-1-glycoprotein 9 
PSG1                  0.076   pregnancy specific beta-1-glycoprotein 1 
PSG4                  0.076   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG8                  0.076   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.076   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG7                  0.073   pregnancy specific beta-1-glycoprotein 7 precursor ...
CEACAM8               0.072   carcinoembryonic antigen-related cell adhesion molec...
PSG3                  0.072   pregnancy specific beta-1-glycoprotein 3 
PSG6                  0.070   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG5                  0.069   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.069   pregnancy specific beta-1-glycoprotein 5 
PSG6                  0.067   pregnancy specific beta-1-glycoprotein 6 isoform b [...
PSG8                  0.067   pregnancy specific beta-1-glycoprotein 8 isoform c ...
CEACAM7               0.062   carcinoembryonic antigen-related cell adhesion molecu...
PSG2                  0.058   pregnancy specific beta-1-glycoprotein 2 
PSG11                 0.058   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.058   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.058   pregnancy specific beta-1-glycoprotein 11 isoform 1...
CEACAM21              0.057   carcinoembryonic antigen-related cell adhesion mole...
PSG4                  0.055   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
CEACAM21              0.054   carcinoembryonic antigen-related cell adhesion molec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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