Guide to the Human Genome
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Name: GZMH Sequence: fasta or formatted (246aa) NCBI GI: 15529990
Description:

granzyme H

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         15           2
 C cysteine            2.8          7           1
 D aspartate           2.4          6           1
 E glutamate           4.1         10           2
 F phenylalanine       4.1         10           1
 G glycine             8.5         21           2
 H histidine           2.8          7           1
 I isoleucine          4.9         12           2
 K lysine              8.5         21           2
 L leucine            10.2         25           4
 M methionine          2.0          5           1
 N asparagine          2.8          7           1
 P proline             6.9         17           2
 Q glutamine           6.1         15           2
 R arginine            5.3         13           1
 S serine              5.7         14           2
 T threonine           6.5         16           2
 V valine              6.5         16           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   granzyme H 
GZMB                  0.676   granzyme B precursor 
CTSG                  0.548   cathepsin G preproprotein 
CMA1                  0.417   chymase 1, mast cell preproprotein 
KLK15                 0.299   kallikrein-related peptidase 15 isoform 4 preproprot...
GZMA                  0.293   granzyme A precursor 
GZMK                  0.272   granzyme K precursor 
KLK8                  0.268   kallikrein 8 isoform 1 preproprotein 
KLK14                 0.266   kallikrein 14 preproprotein 
KLK8                  0.266   kallikrein 8 isoform 2 
CFD                   0.266   complement factor D preproprotein 
PRTN3                 0.259   myeloblastin 
KLK11                 0.253   kallikrein 11 isoform 1 preproprotein 
KLK11                 0.253   kallikrein 11 isoform 2 precursor 
KLK11                 0.253   kallikrein 11 isoform 1 preproprotein 
PRSSL1                0.243   protease, serine-like 1 
GZMM                  0.237   granzyme M precursor 
PRSS1                 0.234   protease, serine, 1 preproprotein 
KLK6                  0.228   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.228   kallikrein-related peptidase 6 isoform A preproprotei...
KLK1                  0.226   kallikrein 1 preproprotein 
KLK13                 0.226   kallikrein 13 precursor 
KLK2                  0.224   kallikrein 2, prostatic isoform 1 
KLK4                  0.220   kallikrein-related peptidase 4 preproprotein 
KLK9                  0.218   kallikrein-related peptidase 9 
PRSS3                 0.216   mesotrypsin isoform 2 preproprotein 
KLK7                  0.210   stratum corneum chymotryptic enzyme preproprotein [H...
KLK7                  0.210   stratum corneum chymotryptic enzyme preproprotein [Ho...
KLK3                  0.207   prostate specific antigen isoform 1 preproprotein [Ho...
PRSS2                 0.205   protease, serine, 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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