Guide to the Human Genome
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Name: RPL15 Sequence: fasta or formatted (204aa) NCBI GI: 15431293
Description:

ribosomal protein L15

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         14           2
 C cysteine            1.0          2           1
 D aspartate           2.5          5           1
 E glutamate           2.9          6           2
 F phenylalanine       2.9          6           2
 G glycine             8.8         18           2
 H histidine           5.4         11           2
 I isoleucine          3.9          8           1
 K lysine              8.3         17           2
 L leucine             7.4         15           2
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline             4.4          9           1
 Q glutamine           4.4          9           1
 R arginine           16.2         33           3
 S serine              4.4          9           1
 T threonine           3.9          8           1
 V valine              5.9         12           1
 W tryptophan          2.5          5           1
 Y tyrosine            4.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein L15 
ZC3H4                 0.017   zinc finger CCCH-type containing 4 
LOC100292214          0.017   PREDICTED: hypothetical protein 
LCA5L                 0.012   Leber congenital amaurosis 5-like 
LOC389722             0.007   PREDICTED: hypothetical protein LOC389722 isoform 2...
LOC389722             0.007   PREDICTED: hypothetical protein LOC389722 isoform 1...
MTHFSD                0.007   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.007   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.007   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.007   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.007   methenyltetrahydrofolate synthetase domain containi...
HPRT1                 0.007   hypoxanthine phosphoribosyltransferase 1 
IFIT2                 0.007   interferon-induced protein with tetratricopeptide r...
LSM11                 0.005   LSM11, U7 small nuclear RNA associated 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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