LCA5L 15557

Name: LCA5L	Sequence: fasta or formatted (670aa)		NCBI GI: 22749049
Description: Leber congenital amaurosis 5-like		Referenced in: Centromere Proteins Crystallins and Other Eye Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 33 2 C cysteine 1.0 7 1 D aspartate 4.8 32 2 E glutamate 8.8 59 2 F phenylalanine 2.2 15 2 G glycine 4.3 29 2 H histidine 4.0 27 2 I isoleucine 4.9 33 3 K lysine 12.2 82 3 L leucine 9.3 62 2 M methionine 1.6 11 1 N asparagine 5.2 35 2 P proline 3.6 24 2 Q glutamine 5.8 39 2 R arginine 5.8 39 2 S serine 9.9 66 2 T threonine 5.5 37 2 V valine 3.7 25 2 W tryptophan 0.1 1 1 Y tyrosine 2.1 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Leber congenital amaurosis 5-like LCA5 0.138 Leber congenital amaurosis 5 LCA5 0.138 Leber congenital amaurosis 5 CENPE 0.033 centromere protein E WDR87 0.028 NYD-SP11 protein LOC440243 0.028 PREDICTED: Putative golgin subfamily A member 6-lik... KIF27 0.028 kinesin family member 27 LOC727832 0.028 golgi autoantigen, golgin subfamily a-like LOC283767 0.028 golgi autoantigen, golgin subfamily a-like UACA 0.027 uveal autoantigen with coiled-coil domains and ankyr... UACA 0.027 uveal autoantigen with coiled-coil domains and ankyr... MYH10 0.025 myosin, heavy polypeptide 10, non-muscle EEA1 0.025 early endosome antigen 1, 162kD EIF3A 0.025 eukaryotic translation initiation factor 3, subunit 1... AKAP9 0.025 A-kinase anchor protein 9 isoform 2 AKAP9 0.025 A-kinase anchor protein 9 isoform 3 NUMA1 0.025 nuclear mitotic apparatus protein 1 MYO18A 0.025 myosin 18A isoform a GOLGA4 0.024 golgi autoantigen, golgin subfamily a, 4 CEP110 0.024 centrosomal protein 110kDa MYH13 0.023 myosin, heavy polypeptide 13, skeletal muscle [Homo... CLIP1 0.023 restin isoform b CLIP1 0.023 restin isoform a SYCP1 0.023 synaptonemal complex protein 1 ERC1 0.022 RAB6-interacting protein 2 isoform delta MYO18A 0.022 myosin 18A isoform b MYH7 0.022 myosin, heavy chain 7, cardiac muscle, beta LUZP1 0.022 leucine zipper protein 1 LUZP1 0.022 leucine zipper protein 1 MYH6 0.022 myosin heavy chain 6 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.