LSM11 24499

Name: LSM11	Sequence: fasta or formatted (360aa)		NCBI GI: 27735089
Description: LSM11, U7 small nuclear RNA associated		Referenced in: Histones, Related Proteins, and Modifying Enzymes Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 32 3 C cysteine 0.8 3 1 D aspartate 4.7 17 1 E glutamate 5.3 19 2 F phenylalanine 3.1 11 1 G glycine 10.0 36 3 H histidine 1.7 6 1 I isoleucine 1.9 7 1 K lysine 5.0 18 3 L leucine 8.1 29 2 M methionine 1.1 4 1 N asparagine 2.2 8 2 P proline 6.9 25 2 Q glutamine 2.5 9 2 R arginine 13.6 49 3 S serine 10.0 36 2 T threonine 5.6 20 2 V valine 5.8 21 1 W tryptophan 0.8 3 1 Y tyrosine 1.9 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LSM11, U7 small nuclear RNA associated ZXDB 0.023 zinc finger, X-linked, duplicated B ZXDA 0.022 zinc finger, X-linked, duplicated A LOC643446 0.022 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.022 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.022 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.022 PREDICTED: similar to ribonucleic acid binding prote... LOC375295 0.020 PREDICTED: hypothetical protein LOC375295 LOC375295 0.020 PREDICTED: hypothetical protein LOC375295 LOC375295 0.020 PREDICTED: hypothetical protein LOC643446 0.020 PREDICTED: similar to ribonucleic acid binding prot... LOC100291220 0.020 PREDICTED: hypothetical protein XP_002347633 LOC643446 0.020 PREDICTED: similar to ribonucleic acid binding prot... LOC100287224 0.020 PREDICTED: hypothetical protein XP_002343483 HMGA2 0.020 high mobility group AT-hook 2 isoform a BCLAF1 0.020 BCL2-associated transcription factor 1 isoform 3 [H... BCLAF1 0.020 BCL2-associated transcription factor 1 isoform 1 [Hom... RNPS1 0.020 RNA-binding protein S1, serine-rich domain RNPS1 0.020 RNA-binding protein S1, serine-rich domain LOC100292188 0.019 PREDICTED: hypothetical protein LOC100288824 0.019 PREDICTED: hypothetical protein LOC100288824 0.019 PREDICTED: hypothetical protein XP_002343711 MBD2 0.019 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.019 methyl-CpG binding domain protein 2 isoform 1 FLJ37078 0.019 hypothetical protein LOC222183 LOC388564 0.019 PREDICTED: hypothetical protein LOC388564 0.019 PREDICTED: hypothetical protein ZRANB2 0.019 zinc finger protein 265 isoform 1 ZRANB2 0.019 zinc finger protein 265 isoform 2 MNX1 0.019 homeo box HB9 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.