Guide to the Human Genome
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Name: RFPL4B Sequence: fasta or formatted (263aa) NCBI GI: 153791360
Description:

ret finger protein-like 4B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         15           2
 C cysteine            5.7         15           1
 D aspartate           6.1         16           1
 E glutamate           7.6         20           2
 F phenylalanine       6.5         17           2
 G glycine             4.2         11           1
 H histidine           4.6         12           2
 I isoleucine          4.2         11           1
 K lysine              3.8         10           2
 L leucine            12.5         33           2
 M methionine          1.5          4           1
 N asparagine          3.0          8           2
 P proline             4.2         11           1
 Q glutamine           3.0          8           1
 R arginine            5.7         15           2
 S serine              8.0         21           2
 T threonine           3.8         10           1
 V valine              7.2         19           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ret finger protein-like 4B 
RFPL1                 0.244   ret finger protein-like 1 
RFPL3                 0.234   ret finger protein-like 3 isoform 1 
RFPL3                 0.234   ret finger protein-like 3 isoform 2 
RFPL2                 0.232   ret finger protein-like 2 isoform 3 
RFPL2                 0.232   ret finger protein-like 2 isoform 3 
RFPL2                 0.232   ret finger protein-like 2 isoform 1 
RFPL2                 0.232   ret finger protein-like 2 isoform 2 
RFPL4A                0.219   ret finger protein-like 4A 
TRIM27                0.179   ret finger protein 
TRIM11                0.158   tripartite motif-containing 11 
TRIML1                0.152   tripartite motif family-like 1 
BTN1A1                0.149   butyrophilin, subfamily 1, member A1 
BTN3A3                0.149   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.149   butyrophilin, subfamily 3, member A3 isoform b [Homo...
TRIM58                0.147   tripartite motif-containing 58 
TRIM39                0.147   tripartite motif-containing 39 isoform 1 
TRIM39                0.143   tripartite motif-containing 39 isoform 2 
TRIM68                0.141   ring finger protein 137 
BTN3A1                0.137   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.137   butyrophilin, subfamily 3, member A1 isoform a [Homo...
BTN2A2                0.135   butyrophilin, subfamily 2, member A2 isoform b [Homo...
BTN2A2                0.135   butyrophilin, subfamily 2, member A2 isoform a 
MEFV                  0.135   Mediterranean fever protein 
BTN2A1                0.133   butyrophilin, subfamily 2, member A1 isoform 1 precur...
TRIM60                0.124   ring finger protein 129 
BTNL3                 0.120   butyrophilin-like 3 
BTNL8                 0.116   butyrophilin-like 8 isoform 6 
BTNL8                 0.116   butyrophilin-like 8 isoform 5 
BTNL8                 0.116   butyrophilin-like 8 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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