Guide to the Human Genome
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Name: ZNF839 Sequence: fasta or formatted (927aa) NCBI GI: 153251840
Description:

zinc finger protein 839

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         82           3
 C cysteine            2.3         21           1
 D aspartate           4.2         39           2
 E glutamate           8.2         76           2
 F phenylalanine       2.4         22           2
 G glycine             8.6         80           6
 H histidine           2.4         22           1
 I isoleucine          1.9         18           1
 K lysine              4.5         42           2
 L leucine            10.8        100           2
 M methionine          1.2         11           1
 N asparagine          1.8         17           2
 P proline             8.8         82           7
 Q glutamine           5.9         55           2
 R arginine            6.8         63           3
 S serine              9.7         90           4
 T threonine           4.5         42           3
 V valine              5.7         53           2
 W tryptophan          0.2          2           1
 Y tyrosine            1.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 839 
LOC100132864          0.117   PREDICTED: hypothetical protein 
LOC729162             0.066   PREDICTED: similar to hCG1981372 
LOC729162             0.064   PREDICTED: similar to hCG1981372 
LOC389906             0.064   PREDICTED: similar to Serine/threonine-protein kina...
LOC389906             0.034   PREDICTED: similar to Serine/threonine-protein kina...
LOC100293492          0.012   PREDICTED: hypothetical protein 
ZBTB7B                0.010   zinc finger and BTB domain containing 7B 
LOC100293130          0.010   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.010   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.010   PREDICTED: similar to kruppel-related zinc finger p...
FBLIM1                0.010   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.010   filamin-binding LIM protein-1 isoform a 
NACA                  0.010   nascent polypeptide-associated complex alpha subuni...
SOCS7                 0.009   suppressor of cytokine signaling 7 
TTN                   0.009   titin isoform N2-A 
SFPQ                  0.008   splicing factor proline/glutamine rich (polypyrimidin...
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
HSF4                  0.008   heat shock transcription factor 4 isoform a 
SRCAP                 0.008   Snf2-related CBP activator protein 
CREBBP                0.008   CREB binding protein isoform b 
CREBBP                0.008   CREB binding protein isoform a 
IRS4                  0.008   insulin receptor substrate 4 
MEF2D                 0.008   myocyte enhancer factor 2D 
MAPK8IP1              0.008   mitogen-activated protein kinase 8 interacting protei...
YLPM1                 0.008   YLP motif containing 1 
CAPNS1                0.007   calpain, small subunit 1 
CAPNS1                0.007   calpain, small subunit 1 
HSPBP1                0.007   hsp70-interacting protein 
HSPBP1                0.007   hsp70-interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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