Guide to the Human Genome
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Name: LOC100132864 Sequence: fasta or formatted (255aa) NCBI GI: 239746767
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         23           2
 C cysteine            3.5          9           1
 D aspartate           5.5         14           3
 E glutamate           4.7         12           2
 F phenylalanine       3.1          8           1
 G glycine             7.5         19           2
 H histidine           2.7          7           1
 I isoleucine          2.7          7           2
 K lysine              5.9         15           2
 L leucine            11.8         30           2
 M methionine          2.0          5           1
 N asparagine          2.4          6           1
 P proline             5.5         14           1
 Q glutamine           3.1          8           1
 R arginine            6.3         16           1
 S serine             12.2         31           2
 T threonine           5.1         13           1
 V valine              5.5         14           1
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
ZNF839                0.437   zinc finger protein 839 
LOC100291323          0.203   PREDICTED: hypothetical protein XP_002348182 
LOC389906             0.166   PREDICTED: similar to Serine/threonine-protein kina...
ZSCAN20               0.018   zinc finger protein 31 
ZNF837                0.018   zinc finger protein 837 isoform 1 
ZNF837                0.018   zinc finger protein 837 isoform 2 
ZNF438                0.016   zinc finger protein 438 isoform b 
ZNF438                0.016   zinc finger protein 438 isoform b 
ZNF438                0.016   zinc finger protein 438 isoform c 
ZNF438                0.016   zinc finger protein 438 isoform a 
ZNF438                0.016   zinc finger protein 438 isoform a 
ZNF438                0.016   zinc finger protein 438 isoform a 
ZNF438                0.016   zinc finger protein 438 isoform a 
ZNF354B               0.016   zinc finger protein 354B 
ZNF710                0.014   zinc finger protein 710 
ZNF407                0.014   zinc finger protein 407 isoform 2 
ZNF407                0.014   zinc finger protein 407 isoform 1 
BCL11A                0.014   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.014   B-cell CLL/lymphoma 11A isoform 2 
BCL11A                0.014   B-cell CLL/lymphoma 11A isoform 3 
ZNF584                0.014   zinc finger protein 584 
ZKSCAN3               0.012   zinc finger with KRAB and SCAN domains 3 
ZSCAN16               0.012   zinc finger and SCAN domain containing 16 
ZNF578                0.012   zinc finger protein 578 
ZNF135                0.012   zinc finger protein 135 
ZEB2                  0.012   zinc finger homeobox 1b 
ZNF492                0.012   zinc finger protein 492 
ZNF236                0.012   zinc finger protein 236 
ZNF98                 0.012   zinc finger protein 98 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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