Guide to the Human Genome
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Name: LOC389906 Sequence: fasta or formatted (110aa) NCBI GI: 239757747
Description:

PREDICTED: similar to Serine/threonine-protein kinase PRKX (Protein kinase PKX1)

Not currently referenced in the text

Other entries for this name:
alt prot {330aa} PREDICTED: similar to Serine/threonine-protein kinase PRKX (Prote...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          8           2
 C cysteine            3.6          4           1
 D aspartate           0.0          0           0
 E glutamate           8.2          9           2
 F phenylalanine       5.5          6           3
 G glycine             8.2          9           2
 H histidine           0.0          0           0
 I isoleucine          1.8          2           1
 K lysine              2.7          3           1
 L leucine            13.6         15           1
 M methionine          0.9          1           1
 N asparagine          1.8          2           1
 P proline             6.4          7           1
 Q glutamine           2.7          3           1
 R arginine            8.2          9           1
 S serine             12.7         14           1
 T threonine           9.1         10           1
 V valine              4.5          5           1
 W tryptophan          0.9          1           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Serine/threonine-protein kina... 
LOC100132864          0.413   PREDICTED: hypothetical protein 
ZNF839                0.316   zinc finger protein 839 
LOC100291724          0.010   PREDICTED: hypothetical protein XP_002346136 
LOC100291595          0.010   PREDICTED: hypothetical protein XP_002345793 
LOC100291097          0.010   PREDICTED: hypothetical protein XP_002347012 
LOC100291431          0.010   PREDICTED: hypothetical protein XP_002346654 
LOC100289384          0.010   PREDICTED: hypothetical protein XP_002342872 
LOC100289468          0.010   PREDICTED: hypothetical protein XP_002342491 
OSTM1                 0.010   osteopetrosis associated transmembrane protein 1 [Ho...
UNK                   0.010   zinc finger CCCH-type domain containing 5 
NLRC5                 0.010   nucleotide-binding oligomerization domains 27 [Homo...
WNT9B                 0.005   wingless-type MMTV integration site family, member 9...
CYP26C1               0.005   cytochrome P450, family 26, subfamily C, polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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