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Search of human proteins with 15147219
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15147219 purine-rich element binding protein B [Homo
sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15147219 purine-rich element binding protein B [Homo sapiens] 635 0.0
gi|5032007 purine-rich element binding protein A [Homo sapiens] 385 e-107
gi|7019507 purine-rich element binding protein G isoform A [Homo... 286 1e-77
gi|62865862 purine-rich element binding protein G isoform B [Hom... 232 3e-61
gi|182765442 homeobox A10 isoform a [Homo sapiens] 44 2e-04
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 43 3e-04
gi|122937424 one cut homeobox 3 [Homo sapiens] 39 0.006
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 37 0.023
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 37 0.023
gi|24432032 zinc finger protein 503 [Homo sapiens] 37 0.029
gi|109452587 family with sequence similarity 98, member B isofor... 36 0.050
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 35 0.066
gi|27363480 hypothetical protein LOC55262 [Homo sapiens] 35 0.086
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 35 0.11
gi|4502565 calpain, small subunit 1 [Homo sapiens] 35 0.11
gi|51599151 calpain, small subunit 1 [Homo sapiens] 35 0.11
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 35 0.11
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.11
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 35 0.11
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 34 0.15
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 34 0.15
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 34 0.15
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 34 0.15
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 34 0.15
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 34 0.19
gi|4507741 twist [Homo sapiens] 34 0.19
gi|27436971 potassium voltage-gated channel, shaker-related subf... 34 0.19
gi|195972866 keratin 10 [Homo sapiens] 33 0.25
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 33 0.33
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 33 0.33
>gi|15147219 purine-rich element binding protein B [Homo sapiens]
Length = 312
Score = 635 bits (1638), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK 60
MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
Sbjct: 1 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK 60
Query: 61 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK 120
IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
Sbjct: 61 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK 120
Query: 121 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI 180
SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
Sbjct: 121 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI 180
Query: 181 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK 240
EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
Sbjct: 181 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK 240
Query: 241 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG 300
YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
Sbjct: 241 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG 300
Query: 301 GEESEGEEVDED 312
GEESEGEEVDED
Sbjct: 301 GEESEGEEVDED 312
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 385 bits (990), Expect = e-107
Identities = 204/286 (71%), Positives = 225/286 (78%), Gaps = 28/286 (9%)
Query: 4 GDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAE 63
G G GGGGG G + GG + ETQELASKR+DIQNKRFYLDVKQNAKGRFLKIAE
Sbjct: 31 GGGGGGGGGGGGSGGGGGGAPGGLQHETQELASKRVDIQNKRFYLDVKQNAKGRFLKIAE 90
Query: 64 VGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEF 123
VGAGG+KSRLTLSM+VA EFRD LGDFIEHYAQLGPS P LA +E PRRALKSEF
Sbjct: 91 VGAGGNKSRLTLSMSVAVEFRDYLGDFIEHYAQLGPSQPPDLAQAQDE---PRRALKSEF 147
Query: 124 LVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFR 183
LVRENRKYY+DLKENQRGRFLRIRQTVNR GPG G Q GQTIALPAQGLIEFR
Sbjct: 148 LVRENRKYYMDLKENQRGRFLRIRQTVNR-------GPGLGSTQ-GQTIALPAQGLIEFR 199
Query: 184 DALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGV 243
DALAKLIDDYG E++ ELPEGTS+TVD+KRFFFDVG NKYGV
Sbjct: 200 DALAKLIDDYGVEEEP-----------------AELPEGTSLTVDNKRFFFDVGSNKYGV 242
Query: 244 FLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDK 289
F+RVSEVKP+YRN+ITVP+K W KFG FC+Y++EMK+IQE+QR+K
Sbjct: 243 FMRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMKKIQEKQREK 288
>gi|7019507 purine-rich element binding protein G isoform A [Homo
sapiens]
Length = 347
Score = 286 bits (733), Expect = 1e-77
Identities = 165/310 (53%), Positives = 201/310 (64%), Gaps = 41/310 (13%)
Query: 23 SRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGS------KSRLTLS 76
++ GG E QELASKR+DIQ KRFYLDVKQ+++GRFLKIAEV G KS+LTLS
Sbjct: 49 NQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLS 108
Query: 77 MAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR------------------- 117
++VAAE +D LGDFIEHYA LG Q ++E G RR
Sbjct: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPH 168
Query: 118 -ALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPA 176
LK++++ R+NRKYYLDLKENQRGRFLRIRQT+ RG G G G + QTI LPA
Sbjct: 169 SVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQE--QTIVLPA 226
Query: 177 QGLIEFRDALAKLIDDYG-GEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFD 235
QG+IEFRDAL +LI+DYG G+ +E GG ELPEGTS VD+KRF+FD
Sbjct: 227 QGMIEFRDALVQLIEDYGEGDIEERRGGDDDPL---------ELPEGTSFRVDNKRFYFD 277
Query: 236 VGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRG 295
VG NKYG+FL+VSEV+P YRN ITVPFKAW +FG F +Y +EM++I ++K R
Sbjct: 278 VGSNKYGIFLKVSEVRPPYRNTITVPFKAWTRFGENFIKYEEEMRKICNSHKEK---RMD 334
Query: 296 GGSGGGEESE 305
G GEE E
Sbjct: 335 GRKASGEEQE 344
Score = 57.8 bits (138), Expect = 1e-08
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 21 PASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEV---GAG---------G 68
P S G E L + ++ N+++YLD+K+N +GRFL+I + G G G
Sbjct: 158 PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLG 217
Query: 69 SKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVREN 128
+ + L EFRD+L IE Y G E+ G ++ P + +N
Sbjct: 218 QEQTIVLPAQGMIEFRDALVQLIEDY---GEGDIEERRGGDDD---PLELPEGTSFRVDN 271
Query: 129 RKYYLDLKENQRGRFLRIRQ 148
+++Y D+ N+ G FL++ +
Sbjct: 272 KRFYFDVGSNKYGIFLKVSE 291
>gi|62865862 purine-rich element binding protein G isoform B [Homo
sapiens]
Length = 322
Score = 232 bits (592), Expect = 3e-61
Identities = 137/261 (52%), Positives = 167/261 (63%), Gaps = 38/261 (14%)
Query: 23 SRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGS------KSRLTLS 76
++ GG E QELASKR+DIQ KRFYLDVKQ+++GRFLKIAEV G KS+LTLS
Sbjct: 49 NQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLS 108
Query: 77 MAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR------------------- 117
++VAAE +D LGDFIEHYA LG Q ++E G RR
Sbjct: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPH 168
Query: 118 -ALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPA 176
LK++++ R+NRKYYLDLKENQRGRFLRIRQT+ RG G G G + QTI LPA
Sbjct: 169 SVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQE--QTIVLPA 226
Query: 177 QGLIEFRDALAKLIDDYG-GEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFD 235
QG+IEFRDAL +LI+DYG G+ +E GG ELPEGTS VD+KRF+FD
Sbjct: 227 QGMIEFRDALVQLIEDYGEGDIEERRGGDDDPL---------ELPEGTSFRVDNKRFYFD 277
Query: 236 VGCNKYGVFLRVSEVKPSYRN 256
VG NKYG+FL+++ S N
Sbjct: 278 VGSNKYGIFLKLTNYPKSREN 298
Score = 57.0 bits (136), Expect = 2e-08
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 21 PASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEV---GAG---------G 68
P S G E L + ++ N+++YLD+K+N +GRFL+I + G G G
Sbjct: 158 PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLG 217
Query: 69 SKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVREN 128
+ + L EFRD+L IE Y G E+ G ++ P + +N
Sbjct: 218 QEQTIVLPAQGMIEFRDALVQLIEDY---GEGDIEERRGGDDD---PLELPEGTSFRVDN 271
Query: 129 RKYYLDLKENQRGRFLRI 146
+++Y D+ N+ G FL++
Sbjct: 272 KRFYFDVGSNKYGIFLKL 289
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 43.5 bits (101), Expect = 2e-04
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAG-GPGGGAGGP 211
GGGG G G GG + + LP + + L GG+ +E A G GGG GG
Sbjct: 44 GGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGL 103
Query: 212 GGGLYGELPEGTSITVDSKR 231
G G +G P + +D+ R
Sbjct: 104 GPGAHGYGPSPIDLWLDAPR 123
Score = 30.4 bits (67), Expect = 2.1
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 201 AGGPGGGAGGPGGGLY 216
AGG GGGAGG GGG Y
Sbjct: 42 AGGGGGGAGGGGGGGY 57
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/65 (41%), Positives = 27/65 (41%), Gaps = 29/65 (44%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG G G GPGG G GG GGPGGG GGPG
Sbjct: 149 GGGGPGGGGGPGGGPGG------------------------GG-----GGGPGGGGGGPG 179
Query: 213 GGLYG 217
GGL G
Sbjct: 180 GGLLG 184
Score = 33.9 bits (76), Expect = 0.19
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 22/62 (35%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
G GG GA G GG G GG GGPGGG GG G
Sbjct: 130 GAGGAGAAAGGGGAHDGPG----------------------GGGGPGGGGGPGGGPGGGG 167
Query: 213 GG 214
GG
Sbjct: 168 GG 169
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 23/72 (31%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG GPG GG G GG GG GGG GG G
Sbjct: 139 GGGGAHDGPGGGGGPGGG-----------------------GGPGGGPGGGGGGGPGGGG 175
Query: 213 GGLYGELPEGTS 224
GG G L G++
Sbjct: 176 GGPGGGLLGGSA 187
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 38.9 bits (89), Expect = 0.006
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 145 RIRQTVNRGGGGFGAGPGPGGLQSGQTIAL--PAQGLIEFRDALAKLIDDYGGEDDELAG 202
R + RG G G G G GG SG L P GL A A +GG G
Sbjct: 254 RAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGL-----AAAGAHGPHGG-----GG 303
Query: 203 GPGGGAGGPGGGLYGE 218
GPGG GGP G E
Sbjct: 304 GPGGSGGGPSAGAAAE 319
Score = 30.0 bits (66), Expect = 2.8
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 161 PGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG-GAGGPGGGLYGEL 219
PG + Q L A G +A L+D GG AGG GG G+ G G GEL
Sbjct: 25 PGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGADFRGEL 84
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG GA G G + +T A P + E + E+ +A GP GGA PG
Sbjct: 582 GGGGLGAR-GSGCQGAAETDASPGATVDEAAAPGPR-------ENSPVAPGPPGGAAAPG 633
Query: 213 GGLYGELPEGTSITVDSKR 231
G G P+GT+ KR
Sbjct: 634 GA--GTTPQGTATAAKPKR 650
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG GA G G + +T A P + E + E+ +A GP GGA PG
Sbjct: 179 GGGGLGAR-GSGCQGAAETDASPGATVDEAAAPGPR-------ENSPVAQGPPGGAAAPG 230
Query: 213 GGLYGELPEGTSITVDSKR 231
G G P+GT+ KR
Sbjct: 231 GA--GTTPQGTATAAKPKR 247
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 36.6 bits (83), Expect = 0.029
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 145 RIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGL-IEFRDALAKLIDDYGGEDDELAGG 203
++ + GGG GAG G G + ++ L + +E + + G D + GG
Sbjct: 133 KLSSVASNGGGAGGAGGGAAGDKDTKSGPLKLSDIGVEDKSSFKPYSKP--GSDKKEPGG 190
Query: 204 PGGGAGGPGGGLYGELPEGTSITVDS 229
GGG GG GGG G E + V S
Sbjct: 191 GGGGGGGGGGGGGGVSSEKSGFRVPS 216
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 35.8 bits (81), Expect = 0.050
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 154 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGED--DELAGGPGGGAGGP 211
GGG G G G GG G +G R YGG D GG GGG GG
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGR-GGYGGRGYGDPYGGGGGGGGGGG 425
Query: 212 GGGLY 216
GGG Y
Sbjct: 426 GGGGY 430
Score = 31.2 bits (69), Expect = 1.2
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 20/62 (32%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG G G G GG G+ +GG GG GGG G G
Sbjct: 339 GGGGGGGGRGGGGGGGGR--------------------GGWGGGGGGWGGGGGGGGGWGG 378
Query: 213 GG 214
GG
Sbjct: 379 GG 380
Score = 30.8 bits (68), Expect = 1.6
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG+G G G GG G +G + R DYGG G GG GG G
Sbjct: 362 GGGGWGGGGGGGGGWGGGGGG--GRGGFQGRG-------DYGGR------GGYGGRGGYG 406
Query: 213 GGLYGE 218
G YG+
Sbjct: 407 GRGYGD 412
Score = 30.4 bits (67), Expect = 2.1
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 21/71 (29%)
Query: 147 RQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG 206
RQ G GG+G G G GG G GG GG G
Sbjct: 328 RQEGGGGRGGWGGGGGGGGRGGG---------------------GGGGGRGGWGGGGGGW 366
Query: 207 GAGGPGGGLYG 217
G GG GGG +G
Sbjct: 367 GGGGGGGGGWG 377
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 35.4 bits (80), Expect = 0.066
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 137 ENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGE 196
+ QR R + + GGGG G GG + G+ A +L D G+
Sbjct: 23 DEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGR--------------APKRLKTDNAGD 68
Query: 197 DDELAGGPGGGAGGPGGGLYGE 218
GG GGGAG GGG GE
Sbjct: 69 QHGGGGGGGGGAGAAGGGGGGE 90
>gi|27363480 hypothetical protein LOC55262 [Homo sapiens]
Length = 580
Score = 35.0 bits (79), Expect = 0.086
Identities = 44/132 (33%), Positives = 55/132 (41%), Gaps = 31/132 (23%)
Query: 94 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG 153
Y+ P+ P L AE G P R L R N Y + RFL + + RG
Sbjct: 7 YSMYFPAVP--LPPRAELAGDPGRY---RALPRRNHLYL-----GETVRFLLVLRC--RG 54
Query: 154 GGGFGAGPGPGGLQSGQTIALPAQGL-IEFRDALAKL--------IDDYGGEDDELAGGP 204
G G G G GPG L ++G E ALA L + GG D+ + P
Sbjct: 55 GAGSGTGGGPG---------LGSRGAWAELATALAALASVSAGGGMPGGGGAGDQDSEPP 105
Query: 205 GGGAGGPGGGLY 216
GGG G GGGL+
Sbjct: 106 GGGDPG-GGGLF 116
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGG-AGGP 211
GGGG G G GPGG SG + + GG GG GGG +GGP
Sbjct: 26 GGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGP-----GGSGGGGSGGP 80
Query: 212 GGG 214
G G
Sbjct: 81 GAG 83
Score = 33.5 bits (75), Expect = 0.25
Identities = 24/71 (33%), Positives = 25/71 (35%), Gaps = 27/71 (38%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGG G GPG G + A P GG GGG GGPG
Sbjct: 3 GGGPSGGGPGGSGRARTSSFAEPG-------------------------GGGGGGGGGPG 37
Query: 213 GGLYGELPEGT 223
G G P GT
Sbjct: 38 GSASG--PGGT 46
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 155 GGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGG 214
GG G G G GGL G + L LI GG GG GGG GG GGG
Sbjct: 10 GGGGGGGGGGGLGGG------------LGNVLGGLISGAGG-----GGGGGGGGGGGGGG 52
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG G G G GG GL + L LI GG GG GGG GG G
Sbjct: 11 GGGGGGGGGGLGG------------GL---GNVLGGLISGAGGGGGGGGGGGGGGGGGGG 55
Query: 213 G 213
G
Sbjct: 56 G 56
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 155 GGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGG 214
GG G G G GGL G + L LI GG GG GGG GG GGG
Sbjct: 10 GGGGGGGGGGGLGGG------------LGNVLGGLISGAGG-----GGGGGGGGGGGGGG 52
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPG 212
GGGG G G G GG GL + L LI GG GG GGG GG G
Sbjct: 11 GGGGGGGGGGLGG------------GL---GNVLGGLISGAGGGGGGGGGGGGGGGGGGG 55
Query: 213 G 213
G
Sbjct: 56 G 56
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.7 bits (78), Expect = 0.11
Identities = 40/168 (23%), Positives = 56/168 (33%), Gaps = 24/168 (14%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAG--- 209
GGGG G G G GG G G A A GG GG G G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS 311
Query: 210 -----------GPGGGLYGELPEGT--SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRN 256
GPGGG L + S +RF G N++ S P+
Sbjct: 312 SPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRF---AGQNQH-----PSGATPTLNQ 363
Query: 257 AITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEES 304
+T P +GG++ Y+ + + G + GG+++
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQA 411
Score = 32.7 bits (73), Expect = 0.42
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 97 LGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGG 156
LG P G GGGP V E YY G R ++ GG
Sbjct: 150 LGTQQPPVAVPGG--GGGPAA-------VPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQ 200
Query: 157 FGAGPGPGGLQSGQTIALPAQGLIE-----FRDALAKLIDDYGGEDDELAGGPGGGAGGP 211
PG G + S A A G ++ + Y G AGG GGG GG
Sbjct: 201 --QSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGG 258
Query: 212 GGGLYG 217
GGG G
Sbjct: 259 GGGSGG 264
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.7 bits (78), Expect = 0.11
Identities = 40/168 (23%), Positives = 56/168 (33%), Gaps = 24/168 (14%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAG--- 209
GGGG G G G GG G G A A GG GG G G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS 311
Query: 210 -----------GPGGGLYGELPEGT--SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRN 256
GPGGG L + S +RF G N++ S P+
Sbjct: 312 SPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRF---AGQNQH-----PSGATPTLNQ 363
Query: 257 AITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEES 304
+T P +GG++ Y+ + + G + GG+++
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQA 411
Score = 32.7 bits (73), Expect = 0.42
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 97 LGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGG 156
LG P G GGGP V E YY G R ++ GG
Sbjct: 150 LGTQQPPVAVPGG--GGGPAA-------VPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQ 200
Query: 157 FGAGPGPGGLQSGQTIALPAQGLIE-----FRDALAKLIDDYGGEDDELAGGPGGGAGGP 211
PG G + S A A G ++ + Y G AGG GGG GG
Sbjct: 201 --QSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGG 258
Query: 212 GGGLYG 217
GGG G
Sbjct: 259 GGGSGG 264
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.7 bits (78), Expect = 0.11
Identities = 40/168 (23%), Positives = 56/168 (33%), Gaps = 24/168 (14%)
Query: 153 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAG--- 209
GGGG G G G GG G G A A GG GG G G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS 311
Query: 210 -----------GPGGGLYGELPEGT--SITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRN 256
GPGGG L + S +RF G N++ S P+
Sbjct: 312 SPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRF---AGQNQH-----PSGATPTLNQ 363
Query: 257 AITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEES 304
+T P +GG++ Y+ + + G + GG+++
Sbjct: 364 LLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQA 411
Score = 32.7 bits (73), Expect = 0.42
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 97 LGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGG 156
LG P G GGGP V E YY G R ++ GG
Sbjct: 150 LGTQQPPVAVPGG--GGGPAA-------VPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQ 200
Query: 157 FGAGPGPGGLQSGQTIALPAQGLIE-----FRDALAKLIDDYGGEDDELAGGPGGGAGGP 211
PG G + S A A G ++ + Y G AGG GGG GG
Sbjct: 201 --QSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGG 258
Query: 212 GGGLYG 217
GGG G
Sbjct: 259 GGGSGG 264
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 34.3 bits (77), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 194 GGEDDELAGGPGGGAGGPGGG 214
GGE ++++GG GGG GG GGG
Sbjct: 352 GGEGEKISGGGGGGKGGGGGG 372
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 34.3 bits (77), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 194 GGEDDELAGGPGGGAGGPGGG 214
GGE ++++GG GGG GG GGG
Sbjct: 352 GGEGEKISGGGGGGKGGGGGG 372
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 34.3 bits (77), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 194 GGEDDELAGGPGGGAGGPGGG 214
GGE ++++GG GGG GG GGG
Sbjct: 352 GGEGEKISGGGGGGKGGGGGG 372
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 34.3 bits (77), Expect = 0.15
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 152 RGGGGFGAG-PGPGGLQSGQTI 172
RGGG GAG PGPGGLQ GQ +
Sbjct: 22 RGGGAGGAGGPGPGGLQPGQRV 43
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 179 LIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGG 214
++ F D L GG + GG GGAGGPG G
Sbjct: 1 MVRFGDELGGRYGGPGG-GERARGGGAGGAGGPGPG 35
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.15
Identities = 59/221 (26%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 88 GDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENR--KYYLDLKENQRGRFLR 145
GD IEH++Q G + E+ A++ G +R + + K + +G +
Sbjct: 112 GDLIEHFSQFG--TVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Query: 146 IRQTVNR-----GGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDEL 200
+++ V + GGGG G+ GG + G+ +G ++ L+K GG
Sbjct: 170 VKKAVPKEDIYSGGGGGGSRSSRGG-RGGR-----GRGGGRDQNGLSK----GGGGGYNS 219
Query: 201 AGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITV 260
GG GGG GG G YG G+S D G N +G F S+ + SY
Sbjct: 220 YGGYGGGGGG-GYNAYGGGGGGSSYGGS------DYG-NGFGGFGSYSQHQSSYG----- 266
Query: 261 PFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGG 301
P K+ G GG + R RGG GGG
Sbjct: 267 PMKSGGGGGGGGSSWGG---------RSNSGPYRGGYGGGG 298
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 33.9 bits (76), Expect = 0.19
Identities = 29/74 (39%), Positives = 31/74 (41%), Gaps = 22/74 (29%)
Query: 152 RGG---GGFGAGPGP-----GGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGG 203
RGG GG G GPGP GG + P FR A GG GG
Sbjct: 688 RGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPP----FRGAR-------GGRS---GGG 733
Query: 204 PGGGAGGPGGGLYG 217
P G GGPGGG+ G
Sbjct: 734 PPNGRGGPGGGMVG 747
Score = 29.3 bits (64), Expect = 4.7
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 154 GGGFGAG----PGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAG 209
GGG G+G GPGG G P +G ++ GG GPGGG G
Sbjct: 774 GGGMGSGHRPHEGPGGSMGGGGGHRPHEGP---GGGIS------GGSGHRPHEGPGGGMG 824
Query: 210 GPGGGLYGELPEGT 223
GG E P G+
Sbjct: 825 AGGGHRPHEGPGGS 838
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 33.9 bits (76), Expect = 0.19
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 145 RIRQTVNRGGGGFGAGPGP---GGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELA 201
R R++ R GG GAGPG GG+ G PAQG G+
Sbjct: 37 RKRRSSRRSAGG-GAGPGGAAGGGVGGGDEPGSPAQGK--------------RGKKSAGC 81
Query: 202 GGPGGGAGGPGGGLYG 217
GG GGGAGG GG G
Sbjct: 82 GG-GGGAGGGGGSSSG 96
>gi|27436971 potassium voltage-gated channel, shaker-related
subfamily, beta member 3 [Homo sapiens]
Length = 404
Score = 33.9 bits (76), Expect = 0.19
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 197 DDELAG---GPGGGAGGPGGGLYGELPEG 222
+D L G GPGGG GGP GG +G P G
Sbjct: 18 EDRLCGPRPGPGGGNGGPAGGGHGNPPGG 46
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 154 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGG 213
GGG+G G GG G + G G +GG GGG+ G GG
Sbjct: 496 GGGYGGGSSGGGSSGGGYGGGSSSG----------------GHGGSSSGGYGGGSSGGGG 539
Query: 214 GLYG 217
G YG
Sbjct: 540 GGYG 543
Score = 31.2 bits (69), Expect = 1.2
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 29/66 (43%)
Query: 152 RGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGP 211
RGGG FG G G G G + GG GGG GG
Sbjct: 464 RGGGSFGGGYGGGSSGGGSS-----------------------------GGGHGGGHGGS 494
Query: 212 GGGLYG 217
GG YG
Sbjct: 495 SGGGYG 500
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 33.1 bits (74), Expect = 0.33
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 202 GGPGGGAGGPGGGLYGELP 220
GGPGGGAGG GGG E P
Sbjct: 159 GGPGGGAGGAGGGRVLECP 177
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 33.1 bits (74), Expect = 0.33
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 202 GGPGGGAGGPGGGLYGELP 220
GGPGGGAGG GGG E P
Sbjct: 96 GGPGGGAGGAGGGRVLECP 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,654,767
Number of Sequences: 37866
Number of extensions: 801841
Number of successful extensions: 7975
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 5822
Number of HSP's gapped (non-prelim): 1552
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.