Guide to the Human Genome
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Name: SVIL Sequence: fasta or formatted (2214aa) NCBI GI: 150417973
Description:

supervillin isoform 2

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [1788aa] supervillin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        169           2
 C cysteine            1.4         32           2
 D aspartate           4.9        108           3
 E glutamate           9.8        216           5
 F phenylalanine       2.9         65           2
 G glycine             5.8        129           2
 H histidine           2.2         49           2
 I isoleucine          2.8         63           2
 K lysine              6.8        150           2
 L leucine             8.2        182           3
 M methionine          1.9         42           1
 N asparagine          3.1         68           2
 P proline             6.1        135           2
 Q glutamine           4.2         94           2
 R arginine            7.3        162           3
 S serine              9.3        206           4
 T threonine           6.1        136           2
 V valine              6.0        132           2
 W tryptophan          1.2         26           2
 Y tyrosine            2.3         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   supervillin isoform 2 
SVIL                  0.680   supervillin isoform 1 
AVIL                  0.036   advillin 
VIL1                  0.035   villin 1 
VILL                  0.031   villin-like protein 
GSN                   0.026   gelsolin isoform a precursor 
GSN                   0.026   gelsolin isoform b 
GSN                   0.026   gelsolin isoform c 
GSN                   0.026   gelsolin isoform c 
GSN                   0.026   gelsolin isoform b 
GSN                   0.026   gelsolin isoform b 
GSN                   0.026   gelsolin isoform b 
GSN                   0.026   gelsolin isoform b 
SCIN                  0.025   scinderin isoform 1 
FLII                  0.019   flightless I homolog 
SCIN                  0.018   scinderin isoform 2 
CAPG                  0.008   gelsolin-like capping protein 
SRRM2                 0.008   splicing coactivator subunit SRm300 
AFF4                  0.008   ALL1 fused gene from 5q31 
NEFH                  0.005   neurofilament, heavy polypeptide 200kDa 
RP1L1                 0.005   retinitis pigmentosa 1-like 1 
ANK2                  0.005   ankyrin 2 isoform 1 
ADRA2B                0.005   alpha-2B-adrenergic receptor 
INCENP                0.005   inner centromere protein antigens 135/155kDa isofor...
KIAA1853              0.004   KIAA1853 protein 
LOC100294236          0.004   PREDICTED: similar to diffuse panbronchiolitis crit...
EPB49                 0.004   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.004   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
EPB49                 0.004   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.004   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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