Guide to the Human Genome
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Name: VIL1 Sequence: fasta or formatted (827aa) NCBI GI: 194394237
Description:

villin 1

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         58           3
 C cysteine            1.0          8           2
 D aspartate           5.1         42           2
 E glutamate           7.5         62           3
 F phenylalanine       4.1         34           2
 G glycine             7.7         64           2
 H histidine           2.2         18           1
 I isoleucine          3.7         31           2
 K lysine              7.1         59           2
 L leucine             8.3         69           3
 M methionine          2.4         20           1
 N asparagine          4.2         35           2
 P proline             4.5         37           2
 Q glutamine           5.9         49           2
 R arginine            4.1         34           2
 S serine              6.3         52           2
 T threonine           5.6         46           2
 V valine              8.1         67           3
 W tryptophan          2.2         18           1
 Y tyrosine            2.9         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   villin 1 
AVIL                  0.614   advillin 
VILL                  0.462   villin-like protein 
GSN                   0.398   gelsolin isoform a precursor 
GSN                   0.398   gelsolin isoform b 
GSN                   0.398   gelsolin isoform c 
GSN                   0.398   gelsolin isoform c 
GSN                   0.398   gelsolin isoform b 
GSN                   0.398   gelsolin isoform b 
GSN                   0.398   gelsolin isoform b 
GSN                   0.398   gelsolin isoform b 
SCIN                  0.389   scinderin isoform 1 
SCIN                  0.268   scinderin isoform 2 
FLII                  0.148   flightless I homolog 
CAPG                  0.141   gelsolin-like capping protein 
SVIL                  0.092   supervillin isoform 2 
SVIL                  0.092   supervillin isoform 1 
EPB49                 0.024   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
EPB49                 0.024   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.024   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.022   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.022   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.022   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
ABLIM3                0.019   actin binding LIM protein family, member 3 
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.016   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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